arXiv subjects

Nicola Marzari

Publications and source records attributed to Nicola Marzari.

At least 235 records · Page 13Linked to original sources

arXiv2011

Photoelectron properties of DNA and RNA bases from many-body perturbation theory

The photoelectron properties of DNA and RNA bases are studied using many-body perturbation theory within the GW approximation, together with a recently developed Lanczos-chain approach. Calculated vertical ionization potentials, electron affinities, and total density of states are in good agreement with experimental values and photoemission spectra. The convergence benchmark demonstrates the importance of using an optimal polarizability basis in the GW calculations. A detailed analysis of the role of exchange and correlation in both many-body and density-functional theory calculations shows that while self-energy corrections are strongly orbital-dependent, they nevertheless remain almost constant for states that share the same bonding character. Finally, we report on the inverse lifetimes of DNA and RNA bases, that are found to depend linearly on quasi-particle energies for all deep valence states. In general, our G0W0-Lanczos approach provides an efficient yet accurate and fully converged description of quasiparticle properties of five DNA and RNA bases.

cond-mat.mtrl-sci↗

arXiv2011

Automated quantum conductance calculations using maximally-localised Wannier functions

A robust, user-friendly, and automated method to determine quantum conductance in disordered quasi-one-dimensional systems is presented. The scheme relies upon an initial density- functional theory calculation in a specific geometry after which the ground-state eigenfunctions are transformed to a maximally-localised Wannier function (MLWF) basis. In this basis, our novel algorithms manipulate and partition the Hamiltonian for the calculation of coherent electronic transport properties within the Landauer-Buttiker formalism. Furthermore, we describe how short- ranged Hamiltonians in the MLWF basis can be combined to build model Hamiltonians of large (>10,000 atom) disordered systems without loss of accuracy. These automated algorithms have been implemented in the Wannier90 code[Mostofi et al, Comput. Phys. Commun. 178, 685 (2008)], which is interfaced to a number of electronic structure codes such as Quantum-ESPRESSO, AbInit, Wien2k, SIESTA and FLEUR. We apply our methods to an Al atomic chain with a Na defect, an axially heterostructured Si/Ge nanowire and to a spin-polarised defect on a zigzag graphene nanoribbon.

physics.comp-ph↗

arXiv2010

Koopmans' condition for density-functional theory

In approximate Kohn-Sham density-functional theory, self-interaction manifests itself as the dependence of the energy of an orbital on its fractional occupation. This unphysical behavior translates into qualitative and quantitative errors that pervade many fundamental aspects of density-functional predictions. Here, we first examine self-interaction in terms of the discrepancy between total and partial electron removal energies, and then highlight the importance of imposing the generalized Koopmans' condition -- that identifies orbital energies as opposite total electron removal energies -- to resolve this discrepancy. In the process, we derive a correction to approximate functionals that, in the frozen-orbital approximation, eliminates the unphysical occupation dependence of orbital energies up to the third order in the single-particle densities. This non-Koopmans correction brings physical meaning to single-particle energies; when applied to common local or semilocal density functionals it provides results that are in excellent agreement with experimental data -- with an accuracy comparable to that of GW many-body perturbation theory -- while providing an explicit total energy functional that preserves or improves on the description of established structural properties.

cond-mat.mtrl-sci↗

arXiv2009

Surface energies, work functions, and surface relaxations of low index metallic surfaces from first-principles

We study the relaxations, surface energies, and work functions of low index metallic surfaces using pseudopotential plane-wave density-functional calculations within the generalized gradient approximation. We study here the (100), (110), and (111) surfaces of Al, Pd, Pt, and Au and the (0001) surface of Ti, chosen for their use as contact or lead materials in nanoscale devices. We consider clean, mostly non-reconstructed surfaces in the slab-supercell approximation. Particular attention is paid to the convergence of these quantities with respect to slab thickness; furthermore, different methodologies for the calculation of work functions and surfaces energies are compared. We find that the use of bulk references for calculations of surface energies and work functions can be detrimental to convergence unless numerical grids are closely matched, especially when surface relaxations are being considered. Our results and comparison show that calculated values often do not quantitatively match experimental values. This may be understandable for the surface relaxations and surface energies, where experimental values can have large error, but even for the work functions, neither local nor semi-local functionals emerge as an accurate choice for every case.

cond-mat.mtrl-sci↗

arXiv2009

Dynamics and Thermodynamics of a Novel Phase of NaAlH4

We characterize a novel orthorhombic phase (gamma) of NaAlH4, discovered using first-principles molecular dynamics, and discuss its relevance to the dehydrogenation mechanism. This phase is close in energy to the known low-temperature structure and becomes the stabler phase above 320 K, thanks to a larger vibrational entropy associated with AlH4 rotational modes. The structural similarity of gamma-NaAlH4 to alpha-Na3AlH6 suggests it acts as a key intermediate during hydrogen release. Findings are consistent with recent experiments recording an unknown phase during dehydrogenation.

cond-mat.mtrl-sci↗

arXiv2009

Spin Channels in Functionalized Graphene Nanoribbons

We characterize the transport properties of functionalized graphene nanoribbons using extensive first-principles calculations based on density functional theory (DFT) that encompass both monovalent and divalent ligands, hydrogenated defects and vacancies. We find that the edge metallic states are preserved under a variety of chemical environments, while bulk conducting channels can be easily destroyed by either hydrogenation or ion or electron beams, resulting in devices that can exhibit spin conductance polarization close to unity.

cond-mat.mtrl-sci↗

arXiv2009

Linear and Non-linear Susceptibilities from Diffusion Quantum Monte Carlo: Application to Periodic Hydrogen Chains

We calculate the linear and non-linear susceptibilities of periodic longitudinal chains of hydrogen dimers with different bond-length alternations using a diffusion quantum Monte Carlo approach. These quantities are derived from the changes in electronic polarization as a function of applied finite electric field - an approach we recently introduced and made possible by the use of a Berry-phase, many-body electric-enthalpy functional. Calculated susceptibilities and hyper-susceptibilities are found to be in excellent agreement with the best estimates available from quantum chemistry - usually extrapolations to the infinite-chain limit of calculations for chains of finite length. It is found that while exchange effects dominate the proper description of the susceptibilities, second hyper-susceptibilities are greatly affected by electronic correlations. We also assess how different approximations to the nodal surface of the many-body wavefunction affect the accuracy of the calculated susceptibilities.

physics.chem-ph↗

arXiv2009

A first-principles characterization of the structure and electronic structure of $α$-S and Rh-S chalcogenides

We have used first-principles calculations to study the structural, electronic, and thermodynamic properties of the three known forms of Rh-S chalcogenides: Rh$_2$S$_3$, Rh$_3$S$_4$, and Rh$_{17}$S$_{15}$. Only the first of these materials of interest for catalysis had been studied previously within this approach. We find that Rh$_{17}$S$_{15}$ crystallizes in a {\em Pm}\={3}{\em m} centrosymmetric structure, as believed experimentally but never confirmed. We show band structures and densities of states for these compounds. Finally, we also investigated the ground state structure of solid sulfur ($α$-S), one of the few elements that represents a challenge for full first-principles calculations due to its demanding 128-atom unit cell and dispersion interactionis between S$_8$ units.

cond-mat.mtrl-sci↗

arXiv2009

A converse approach to the calculation of NMR shielding tensors

We introduce an alternative approach to the first-principles calculation of NMR shielding tensors. These are obtained from the derivative of the orbital magnetization with respect to the application of a microscopic, localized magnetic dipole. The approach is simple, general, and can be applied to either isolated or periodic systems. Calculated results for simple hydrocarbons, crystalline diamond, and liquid water show very good agreement with established methods and experimental results.

cond-mat.mtrl-sci↗

arXiv2008

Bulk Aluminum at High Pressure: A First-Principles Study

The behavior of metals at high pressure is of great importance to the fields of shock physics, geophysics, astrophysics, and nuclear materials. In order to further understand the properties of metals at high pressures we studied the equation of state of aluminum using first-principles techniques up to 2500 GPa, pressures within reach of the planned L.L.N.L. National Ignition Facility. Our simulations use density-functional theory and density-functional perturbation theory in the generalized gradient approximation at 0K. We found core overlaps to become relevant beyond pressures of 1200 GPa. The equations of state for three phases (fcc, bcc, and hcp) were calculated predicting the fcc-hcp, fcc-bcc, and hcp-bcc transitions to occur at 215 GPa, 307 GPa, and 435 GPa respectively. From the phonon dispersions at increasing pressure, we predict a softening of the lowest transverse acoustic vibrational mode along the [110] direction, which corresponds to a Born instability of the fcc phase at 725 GPa.

cond-mat.mtrl-sci↗

arXiv2007

Vibrational Recognition of Adsorption Sites for Carbon Monoxide on Platinum and Platinum-Ruthenium Surfaces

We have studied the vibrational properties of CO adsorbed on platinum and platinum-ruthenium surfaces using density-functional perturbation theory within the Perdew-Burke-Ernzerhof generalized-gradient approximation. The calculated C-O stretching frequencies are found to be in excellent agreement with spectroscopic measurements. The frequency shifts that take place when the surface is covered with ruthenium monolayers are also correctly predicted. This agreement for both shifts and absolute vibrational frequencies is made more remarkable by the frequent failure of local and semilocal exchange-correlation functionals in predicting the stability of the different adsorption sites for CO on transition metal surfaces. We have investigated the chemical origin of the C-O frequency shifts introducing an orbital-resolved analysis of the force and frequency density of states, and assessed the effect of donation and backdonation on the CO vibrational frequency using a GGA + molecular U approach. These findings rationalize and establish the accuracy of density-functional calculations in predicting absolute vibrational frequencies, notwithstanding the failure in determining relative adsorption energies, in the strong chemisorption regime.

cond-mat.mtrl-sci↗

arXiv2007

Phonon anharmonicities in graphite and graphene

We determine from first-principles the finite-temperature properties--linewidths, line shifts, and lifetimes--of the key vibrational modes that dominate inelastic losses in graphitic materials. In graphite, the phonon linewidth of the Raman-active E2g mode is found to decrease with temperature; such anomalous behavior is driven entirely by electron-phonon interactions, and does not appear in the nearly-degenerate infrared-active E1u mode. In graphene, the phonon anharmonic lifetimes and decay channels of the A'1 mode at K dominate over E2g at G and couple strongly with acoustic phonons, highlighting how ballistic transport in carbon-based interconnects requires careful engineering of phonon decays and thermalization.

cond-mat.mtrl-sci↗

arXiv2007

Electrostatics in Periodic Boundary Conditions and Real-space Corrections

We address periodic-image errors arising from the use of periodic boundary conditions to describe systems that do not exhibit full three-dimensional periodicity. The difference between the periodic potential, as straightforwardly obtained from a Fourier transform, and the potential satisfying any other boundary conditions can be characterized analytically. In light of this observation, we present an efficient real-space method to correct periodic-image errors, based on a multigrid solver for the potential difference, and demonstrate that exponential convergence of the energy with respect to cell size can be achieved in practical calculations. Additionally, we derive rapidly convergent expansions for determining the Madelung constants of point-charge assemblies in one, two, and three dimensions.

cond-mat.other↗

arXiv2007

Spin and orbital magnetic response in metals: susceptibility and NMR shifts

A DFT-based method is presented which allows the computation of all-electron NMR shifts of metallic compounds with periodic boundary conditions. NMR shifts in metals measure two competing physical phenomena. Electrons interact with the applied magnetic field (i) as magnetic dipoles (or spins), resulting in the Knight shift, (ii) as moving electric charges, resulting in the chemical (or orbital) shift. The latter is treated through an extension to metals of the Gauge Invariant Projector Augment Wave(GIPAW) developed for insulators. The former is modeled as the hyperfine interaction between the electronic spin polarization and the nuclear dipoles. NMR shifts are obtained with respect to the computed shieldings of reference compounds, yielding fully ab-initio quantities which are directly comparable to experiment. The method is validated by comparing the magnetic susceptibility of interacting and non-interacting homogeneous gas with known analytical results, and by comparing the computed NMR shifts of simple metals with experiment.

cond-mat.mtrl-sci↗

arXiv2007

In-plane structure and ordering at liquid sodium surfaces and interfaces from ab initio molecular dynamics

Atoms at liquid metal surfaces are known to form layers parallel to the surface. We analyze the two-dimensional arrangement of atoms within such layers at the surface of liquid sodium, using ab initio molecular dynamics (MD) simulations based on density functional theory. Nearest neighbor distributions at the surface indicate mostly 5-fold coordination, though there are noticeable fractions of 4-fold and 6-fold coordinated atoms. Bond angle distributions suggest a movement toward the angles corresponding to a six-fold coordinated hexagonal arrangement of the atoms as the temperature is decreased towards the solidification point. We rationalize these results with a distorted hexagonal order at the surface, showing a mixture of regions of five and six-fold coordination. The liquid surface results are compared with classical MD simulations of the liquid surface, with similar effects appearing, and with ab initio MD simulations for a model solid-liquid interface, where a pronounced shift towards hexagonal ordering is observed as the temperature is lowered.

cond-mat.mtrl-sci↗

arXiv2007

Simulation of Heme using DFT+U: a step toward accurate spin-state energetics

We investigate the DFT+U approach as a viable solution to describe the low-lying states of ligated and unligated iron heme complexes. Besides their central role in organometallic chemistry, these compounds represent a paradigmatic case where LDA, GGA, and common hybrid functionals fail to reproduce the experimental magnetic splittings. In particular, the imidazole pentacoordinated heme is incorrectly described as a triplet by all usual DFT flavors. In this study we show that a U parameter close to 4 eV leads to spin transitions and molecular geometries in quantitative agreement with experiments, and that DFT+U represents an appealing tool in the description of iron porphyrin complexes, at a much reduced cost compared to correlated quantum-chemistry methods. The possibility of obtaining the U parameter from first-principles is explored through a self-consistent linear-response formulation. We find that this approach, which proved to be successful in other iron systems, produces in this case some overestimation with respect to the optimal values of U.

cond-mat.soft↗

arXiv2007

Exponential localization of Wannier functions in insulators

The exponential localization of Wannier functions in two or three dimensions is proven for all insulators that display time-reversal symmetry, settling a long-standing conjecture. Our proof relies on the equivalence between the existence of analytic quasi-Bloch functions and the nullity of the Chern numbers (or of the Hall current) for the system under consideration. The same equivalence implies that Chern insulators cannot display exponentially localized Wannier functions. An explicit condition for the reality of the Wannier functions is identified.

cond-mat.mtrl-sci↗

arXiv2007

Hydrogen bonding and coordination in normal and supercritical water from X-ray inelastic scattering

A direct measure of hydrogen bonding in water under conditions ranging from the normal state to the supercritical regime is derived from the Compton scattering of inelastically-scattered X-rays. First, we show that a measure of the number of electrons $n_e$ involved in hydrogen bonding at varying thermodynamic conditions can be directly obtained from Compton profile differences. Then, we use first-principles simulations to provide a connection between $n_e$ and the number of hydrogen bonds $n_{HB}$. Our study shows that over the broad range studied the relationship between $n_e$ and $n_{HB}$ is linear, allowing for a direct experimental measure of bonding and coordination in water. In particular, the transition to supercritical state is characterized by a sharp increase in the number of water monomers, but also displays a significant number of residual dimers and trimers.

cond-mat.soft↗