arXiv subjects

Nicolas Biais

Publications and source records attributed to Nicolas Biais.

3 recordsLinked to original sources

arXiv2018

Pili mediated intercellular forces shape heterogeneous bacterial microcolonies prior to multicellular differentiation

Microcolonies are aggregates of a few dozen to a few thousand cells exhibited by many bacteria. The formation of microcolonies is a crucial step towards the formation of more mature bacterial communities known as biofilms, but also marks a significant change in bacterial physiology. Within a microcolony, bacteria forgo a single cell lifestyle for a communal lifestyle hallmarked by high cell density and physical interactions between cells potentially altering their behaviour. It is thus crucial to understand how initially identical single cells start to behave differently while assembling in these tight communities. Here we show that cells in the microcolonies formed by the human pathogen Neisseria gonorrhoeae (Ng) present differential motility behaviors within an hour upon colony formation. Observation of merging microcolonies and tracking of single cells within microcolonies reveal a heterogeneous motility behavior: cells close to the surface of the microcolony exhibit a much higher motility compared to cells towards the center. Numerical simulations of a biophysical model for the microcolonies at the single cell level suggest that the emergence of differential behavior within a multicellular microcolony of otherwise identical cells is of mechanical origin. It could suggest a route toward further bacterial differentiation and ultimately mature biofilms.

physics.bio-ph↗

arXiv2018

Evolutionary algorithms converge towards evolved biological photonic structures

Nature features a plethora of extraordinary photonic architectures that have been optimized through natural evolution. While numerical optimization is increasingly and successfully used in photonics, it has yet to replicate any of these complex naturally occurring structures. Using evolutionary algorithms directly inspired by natural evolution, we have retrieved emblematic natural photonic structures, indicating how such regular structures might have spontaneously emerged in nature and to which precise optical or fabrication constraints they respond. Comparisons between algorithms show that recombination between individuals inspired by sexual reproduction confers a clear advantage in this context of modular problems and suggest further ways to improve the algorithms. Such an in silico evolution can also suggest original and elegant solutions to practical problems, as illustrated by the design of counter-intuitive anti-reflective coating for solar cells.

physics.optics↗

arXiv2015

Formation and Dissolution of Bacterial Colonies

Many organisms form colonies for a transient period of time to withstand environmental pressure. Bacterial biofilms are a prototypical example of such behavior. Despite significant interest across disciplines, physical mechanisms governing the formation and dissolution of bacterial colonies are still poorly understood. Starting from a kinetic description of motile and interacting cells we derive a hydrodynamic equation for their density on a surface. We use it to describe formation of multiple colonies with sizes consistent with experimental data and to discuss their dissolution.

cond-mat.soft↗