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Nicolas Dubos

Publications and source records attributed to Nicolas Dubos.

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Assessing the effect of sample bias correction in species distribution models

Open-source biodiversity databases contain a large amount of species occurrence records, but these are often spatially biased, which affects the reliability of species distribution models based on these records. Sample bias correction techniques include data filtering at the cost of record numbers or require considerable additional sampling effort. However, independent data are rarely available and assessment of the correction technique must rely on performance metrics computed with subsets of the only available (biased) data, which may be misleading. Here we assess the extent to which an acknowledged sample bias correction technique is likely to improve models' ability to predict species distributions in the absence of independent data. We assessed the variation in model predictions induced by the correction and model stochasticity. We present an index of the effect of correction relative to model stochasticity, the Relative Overlap Index (ROI). We tested whether the ROI better represented the effect of correction than classic performance metrics and absolute overlap metrics using 64 vertebrate species and 21 virtual species with a generated sample bias. When based on absolute overlaps and cross-validation performance metrics, we found no effect of correction, except for cAUC. When considering its effect relative to model stochasticity, the effect of correction depended on the site and the species. Virtual species enabled us to verify that the correction actually improved distribution predictions and the biological relevance of the selected variables at the sites with a clear gradient of sample bias, and when species distribution predictors are not correlated with sample bias patterns.

q-bio.PE

Protection gaps in Amazon floodplains will increase with climate change: Insight from the world's largest scaled freshwater fish

The Amazon floodplains represent important surfaces of highly valuable ecosystems, yet they remain neglected from protected areas. While the efficiency of the protected area network of the Amazon basin may be jeopardised by climate change, floodplains are exposed to important consequences of climate change but are omitted from species distribution models and protection gap analyses. We modelled the current and future (2070) distribution of the giant bony-tongue fish Arapaima sp. accounting for climate and habitat requirements, with consideration of dam presence (already existing and planned constructions) and hydroperiod (high- and low-water stages). We further quantified the amount of suitable environment which falls inside and outside the current network of protected areas to identify spatial conservation gaps. We predict climate change to cause the decline of environmental suitability by 16.6% during the high-water stage, and by 19.4% during the low-water stage. We found that about 70% of the suitable environments of Arapaima sp. remain currently unprotected, which is likely to increase by 5% with future climate change effects. Both current and projected dam constructions may hamper population flows between the central and the Bolivian and Peruvian parts of the basin. We highlight protection gaps mostly in the southwestern part of the basin and recommend the extension of the current network of protected areas in the floodplains of the upper Ucayali, Juruà and Purus Rivers and their tributaries. This study showed the importance of taking into account hydroperiods and dispersal barriers in forecasting the distribution of freshwater fish species, and stresses the urgent need to integrate floodplains to the protected area networks.

q-bio.PE

Dispersal-based species pools as sources of connectivity area mismatches

Context - Prioritising is likely to differ depending on the species considered for connectivity assessments, leading to a lack of consensual decisions for territorial planning. Objectives - The objective was to assess the relevance of identifying priority areas for connectivity for groups of species based on common dispersal abilities. We aimed to assess the impact of target groups choices on predicted priority areas. Method - The study was located at the Thau Lagoon territory to demonstrate the methodological approach. Ecological niche modelling was used to quantify species resistance and to identify suitable habitat patches. We coupled the least-cost path methodology with circuit theory to assess species connectivity. We classified connectivity from high to low levels and averaged the results by dispersal groups. Results - We found important differences in identified priority areas between groups with dissimilar dispersal abilities, with little overlap between highly connected areas. We identified a gap between the level of protection of low dispersal species and highly connected areas. We found mismatches between existing corridors and connectivity in low dispersal species, and a greater impact in areas of expected urban sprawl projects on favourably connected areas for species with high dispersal capabilities. Conclusion - We have demonstrated that a diversity of dispersal capacity ranges must be accounted for in order to identify ecological corridors in programmes that aim to restore habitat connectivity at territorial levels. Our findings are oriented to support the decisions of planning initiatives, at both local and regional scale.

q-bio.PE