arXiv subjects

Nicolas Fares

Publications and source records attributed to Nicolas Fares.

6 recordsLinked to original sources

arXiv2025

Inferring intraciliary dynamics from the gliding motility of Chlamydomonas reinhardtii

The unicellular microalga Chlamydomonas reinhardtii is widely recognized as a premier model living microswimmer for physicists and biophysicists. However, the interest around C. reinhardtii goes beyond its swimming capabilities. In fact, light can drastically alter its behavior: under blue illumination, the cell attaches to a nearby surface and intermittently glides on it. Such a gliding motility is powered by molecular-motor proteins operating on the cell's cilia, and the related machinery has established the cell as a prime reference for the study of intraciliary-transport mechanisms. This is what we focus on in the present work, by combining in-line holographic microscopy -which leads to unprecedented spatial and temporal resolutions on the gliding dynamics -and statistical inference. We show that, while gliding, the cells exhibit anomalous-diffusive features, including Lorentzian-like distributions of displacements, which are reminiscent of enhanced search strategies. The latter may be exploited by the cells to facilitate colony formation, or, more broadly, by organisms possessing an intraciliary-transport machinery for the transport of cargo molecules and signaling. Furthermore, gliding trajectories, by being intermittent, are valid candidates to infer forces at the molecular-motor scale that are necessary for the cells to move, or symetrically, to transport cargo molecules. We report a gliding threshold of about 20 pN, compatible with the activity of single molecular motors.

cond-mat.soft↗

arXiv2025

First-passage statistics of confined colloids

The encounter of diffusing entities underlies a wide range of natural phenomena. The dynamics of these first-passage dynamics are strongly influenced by confining geometries. Confinement modifies microscopic diffusion through conservative and hydrodynamic interactions, making it essential for realistic modeling. In this Letter, we investigate how confinement affects the first-passage statistics of a diffusing particle. Using \textit{state-of-the-art} holographic microscopy combined with advanced statistical inference, we probe this motion with nanometric precision. Our experimental and numerical results show that confinement can either hinder or enhance first-passage kinetics, depending on the spatial direction. In particular, wall-normal target finding is accelerated by confinement-induced non-Gaussian displacement statistics, which increases the probability of rare, large displacements, with implications for confined chemical reactions and biological \textit{winners-take-all} processes near boundaries.

cond-mat.soft↗

arXiv2024

Observation of Brownian elastohydrodynamic forces acting on confined soft colloids

Confined motions in complex environments are ubiquitous in microbiology. These situations invariably involve the intricate coupling between fluid flow, soft boundaries, surface forces and fluctuations. In the present study, such a coupling is investigated using a novel method combining holographic microscopy and advanced statistical inference. Specifically, the Brownian motion of softmicrometric oil droplets near rigid walls is quantitatively analyzed. All the key statistical observables are reconstructed with high precision, allowing for nanoscale resolution of local mobilities and femtonewton inference of conservative or non-conservative forces. Strikingly, the analysis reveals the existence of a novel, transient, but large, soft Brownian force. The latter might be of crucial importance for microbiological and nanophysical transport, target finding or chemical reactions in crowded environments, and hence the whole life machinery.

cond-mat.soft↗

arXiv2023

Unsteady drag force on an immersed sphere oscillating near a wall

The unsteady hydrodynamic drag exerted on an oscillating sphere near a planar wall is addressed experimentally, theoretically, and numerically. The experiments are performed by using colloidal-probe Atomic Force Microscopy (AFM) in thermal noise mode. The natural resonance frequencies and quality factors are extracted from the measurement of the power spectrum density of the probe oscillation for a broad range of gap distances and Womersley numbers. The shift in the natural resonance frequency of the colloidal probe as the probe goes close to a solid wall infers the wall-induced variations of the effective mass of the probe. Interestingly, a crossover from a positive to a negative shift is observed as the Womersley number increases. In order to rationalize the results, the confined unsteady Stokes equation is solved numerically using a finite-element method, as well as asymptotic calculations.The in-phase and out-of-phase terms of the hydrodynamic drag acting on the sphere are obtained and agree well to the experimental results. All together, the experimental, theoretical, and numerical results show that the hydrodynamic force felt by an immersed sphere oscillating near a wall is highly dependent on the Womersley number.

cond-mat.soft↗

arXiv2022

Non-Gaussian diffusion near surfaces

We study the diffusion of particles confined close to a single wall and in double-wall planar channel geometries where the local diffusivities depend on the distance to the boundaries. Displacement parallel to the walls is Brownian as characterized by its variance, but it is non-Gaussian having a non-zero fourth cumulant. Establishing a link with Taylor dispersion, we calculate the fourth cumulant and the tails of the displacement distribution for general diffusivity tensors along with potentials generated by either the walls or externally, for instance gravity. Experimental and numerical studies of the motion of a colloid in the direction parallel to the wall give measured fourth cumulants which are correctly predicted by our theory. Interestingly, contrary to models of Brownian-yet-non-Gaussian diffusion, the tails of the displacement distribution are shown to be Gaussian rather than exponential. All together, our results provide additional tests and constraints for the inference of force maps and local transport properties near surfaces.

cond-mat.soft↗

arXiv2009

Aspects Analytiques Dans la Mathematique De Sharaf Al-Dîn Al-TÛSÎ

The analytical aspects of the "Traité des équations" of Sharaf al-Dîn al-Tûsî (2nd half of the XIIth century) have been underlined by R. Rashed (1974, 1986). In the present paper, we consider again some of those aspects, when studying the "second part" of the "Traité". We find out that al-Tûsî introduces certain notions, develops reasonings and uses calculating procedures that may allow his work to be an important reference in the history of the mathematical analysis. As such, one is led to examine the foundations of a J.P. Hogendijk conjecture (1989), which situates the advanced mathematics of this "2nd Part" in the only domain of Euclidian geometry. Simultaneously, we shall try to shed some light on a passage of the "Traité", made unclear by al-Tûsî style and expression. Our study is essentially based on the texts to confirm the originality and the importance of these XIIth century mathematics. I would like to express my thanks to Prof. C. Houzel (Univ. Paris VII) and B. El-Mabsout (Univ. Paris VI), for reading the manuscript and providing their precious remarks.

math.HO↗