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Nicole Fontana

Publications and source records attributed to Nicole Fontana.

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Generalized propensity score weighting for functional causal inference framework

Estimating causal effects in observational studies requires adjustment for confounding, a task that becomes challenging when the exposure is a function observed over a continuous domain rather than a scalar variable. We develop a functional propensity score weighting framework that achieves covariate balance by removing dependence between time-varying treatments and observed confounders, thereby enabling estimation of marginal causal effects in settings with functional treatments, covariates, and outcomes. We propose a dual formulation of the weight estimation problem that yields a smooth unconstrained optimization and improves computational scalability. The proposed framework extends naturally to settings with time-varying covariates and to longitudinal outcomes via a function-on-function marginal structural model, allowing estimation of causal effect surfaces. The proposed method improves covariate balance, estimation accuracy, and computational efficiency compared to the existing approach and retains these properties when extended to functional covariates and outcomes. We apply the method to data from the UK Biobank to estimate the causal effect of body mass index trajectories on the risk of Type 2 Diabetes and on subsequent glycated hemoglobin trajectories, a functional measure of metabolic status.

stat.ME

Enhancing comorbidity network inference with risk-enriched health trajectories embedding

Multimorbidity poses a growing challenge for individual health, reducing quality of life and increasing treatment burden, resulting in a multiplicative impact on healthcare system management and fragmented care trajectories. Comorbidity networks could provide crucial insight into characterising multimorbidity and disease relationships. However, existing approaches to comorbidity network construction face critical limitations: they overlook temporal information by relying on cross-sectional statistics, produce biased association estimates by ignoring confounding due to shared risk factors, and fail to distinguish between direct and indirect disease associations, thereby yielding fully connected networks. To address these limitations, we develop a methodological framework for population-level disease network inference that uses individual health trajectories to learn disease associations, capturing semantic similarity and temporal co-occurrence. Sparse network estimation is achieved via Gaussian Graphical Models with Lasso regularisation, informed by prior clinical knowledge on shared risk factors derived from a dedicated confounding evaluation step. Applied to UK Biobank data comprising 24 cardiometabolic diseases and 76 risk factors, the resulting network revealed clinically meaningful disease patterns. Topological analysis identifies key pathological hubs, reveals potential actionable targets for multimorbidity management, and identifies four distinct disease communities that align with the established cardiometabolic taxonomy. Building on this community structure, we derive community-based patient representations that capture disease progression dynamics. Clustering these representations reveals four progression phenotypes with significantly different long-term survival trajectories, highlighting the potential of the framework for risk stratification and personalised care.

stat.AP

A latent class approach to assess the effects of dynamic adherence to polytherapy in heart failure patients

Heart failure (HF) treatment relies heavily on pharmacotherapy, particularly combining multiple therapies as recommended by clinical guidelines. However, non-adherence to prescribed regimens remains a significant challenge, contributing to increased hospitalizations and poorer patient outcomes. This study introduces a novel methodological pipeline that integrates Latent Markov Models (LMM) with dynamic adherence modeling to evaluate adherence behaviors and their impact on HF rehospitalization. Using administrative healthcare data from Lombardy, Italy, we analyzed 6,818 patients hospitalized for HF between July and December 2020. Adherence was assessed monthly over a six-month observation period, and adherence profiles were linked to clinical outcomes using Cox regression. Seven latent behavioral profiles were identified, reflecting varying levels and trajectories of adherence. The findings revealed that higher adherence levels significantly reduced the risk of rehospitalization. Patients with consistently high adherence exhibited a 56% lower risk of HF rehospitalization compared to those with low adherence. Importantly, improving adherence during the observation period was associated with better survival probabilities, highlighting the potential benefits of timely interventions. Additionally, adherence behaviors were influenced by factors such as age, comorbidity burden, and hospitalization during the observation period. This study underscores the importance of dynamic and personalized strategies to monitor and enhance adherence to polytherapy. By linking adherence patterns to clinical outcomes, the proposed approach offers actionable insights for improving patient management and reducing the burden of HF on healthcare systems.

stat.AP

Unraveling time-varying causal effects of multiple exposures: integrating Functional Data Analysis with Multivariable Mendelian Randomization

Mendelian Randomization is a widely used instrumental variable method for assessing causal effects of lifelong exposures on health outcomes. Many exposures, however, have causal effects that vary across the life course and often influence outcomes jointly with other exposures or indirectly through mediating pathways. Existing approaches to multivariable Mendelian Randomization assume constant effects over time and therefore fail to capture these dynamic relationships. We introduce Multivariable Functional Mendelian Randomization (MV-FMR), a new framework that extends functional Mendelian Randomization to simultaneously model multiple time-varying exposures. The method combines functional principal component analysis with a data-driven cross-validation strategy for basis selection and accounts for overlapping instruments and mediation effects. Through extensive simulations, we assessed MV-FMR's ability to recover time-varying causal effects under a range of data-generating scenarios and compared the performance of joint versus separate exposure effect estimation strategies. Across scenarios involving nonlinear effects, horizontal pleiotropy, mediation, and sparse data, MV-FMR consistently recovered the true causal functions and outperformed univariable approaches. To demonstrate its practical value, we applied MV-FMR to UK Biobank data to investigate the time-varying causal effects of systolic blood pressure and body mass index on coronary artery disease. MV-FMR provides a flexible and interpretable framework for disentangling complex time-dependent causal processes and offers new opportunities for identifying life-course critical periods and actionable drivers relevant to disease prevention.

stat.AP

Integrating state-sequence analysis to uncover dynamic drug-utilization patterns to profile heart failure patients

Globally, the incidence of heart failure is increasing, and its principal treatment involves drug therapy. However, widespread non-adherence to therapies is prevalent among heart failure patients and often results in worsening health conditions and an increase in hospital admissions. This study aims to develop an innovative approach, the State-Sequence analysis, to profile heart failure patients based on different drug-utilization patterns. These patterns aim to capture both the multidimensional and dynamic effects of therapies. Subsequently, the study explores how combining clustering algorithms with this technique influences overall patient survival. Findings highlight the importance of continued drug therapy after the first hospitalization in improving heart failure prognosis, irrespective of its severity. The proposed approach can assist healthcare specialists in evaluating the pathways provided to patients, allowing for a change in analysis from a transversal and syntactical approach to a holistic one that leverages statistical tools that are slightly more complex than traditional methods. Moreover, because of the many options available for defining states, temporal granularity, and spacing metrics, SSA is a flexible method applicable to various epidemiological scenarios.

stat.AP