arXiv subjects

Niels F. W. Ligterink

Publications and source records attributed to Niels F. W. Ligterink.

15 recordsLinked to original sources

arXiv2026

Complex Organic Molecules in Protostars with ALMA Spectral Surveys (COMPASS) II. Approach to data reduction and products for line-rich broadband (sub)millimeter spectra

Studying the chemical composition of the warm gas surrounding embedded solar-type protostars is one of the areas for which the Atacama Large Millimeter/submillimeter Array (ALMA) is particularly well suited. Recently, the ALMA Large Program ``Complex Organic Molecules in Protostars with ALMA Spectral Surveys'' (COMPASS) carried out an observing campaign of a sample of 11 protostellar regions to investigate the chemical impact of their environments and evolutionary stages. The aim of this paper is to provide the observational and procedural information necessary for the community to understand the analysis presented in forthcoming scientific papers by the COMPASS collaboration, and to enable archival research using the data products provided by our team and the ALMA Science Archive. This paper describes the technical setup of the observations, and it outlines the data-processing pipeline and primary data products from this initiative. The Common Astronomy Software Applications (CASA) was used for initial calibration following the standard ALMA Pipeline, and then IMAGER was used for self-calibration and imaging. We describe post-processing done with Python to achieve favorable continuum subtraction, correct for the primary beam response, and extract spectra. We discuss our strategy for mitigating data challenges, including those related to data volume and continuum subtraction for spectral line analysis. The incorporation of IMAGER in our workflow was advantageous in terms of the computing efficiency which allowed us to benchmark several imaging parameters and techniques; we also demonstrate that the imaging outcomes using IMAGER or CASA are scientifically comparable. Numerous data products are generated for the program, including image cubes for the 36 spectral windows targeting each source, extracted spectra, and continuum images.

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arXiv2026

Active moons in our Solar System and beyond -- Io, Europa, Enceladus, Triton, and exomoons

The outgassing signatures of Io, Europa, Enceladus, Triton, and Io-like exomoons are the focus of this review chapter. The rocky volcanic world of Io is unique in our Solar System, with plumes reaching to hundreds of kilometres in altitude. Io-like exomoons could leave signatures strong enough to be detected with ground-based telescopes. The icy moons Europa and Enceladus, with their subsurface oceans, are currently the best candidates for life. Triton is different in many ways and raises unexplored questions. Our knowledge of these active moons is derived from space- and ground-based observations. To understand their origin, we discuss moon formation in general, before examining evidence and signatures of plumes on these moons. Given the accessibility of subsurface oceanic material through the occurrence of plumes, we expand on possibilities to investigate biosignatures.

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arXiv2025

Observational evidence for a possible link between PAH emission and dust trap locations in protoplanetary disks

Polycyclic Aromatic Hydrocarbons (PAHs) are commonly detected in protoplanetary disks, but it is unclear what causes the wide range of intensities across the samples. In this work, the measured PAH intensities of a range of disks are compared with ALMA dust continuum images, in order to test whether there is evidence that PAHs are frozen out on pebbles in dust traps and only sublimate under certain conditions. A sample is constructed from 26 T Tauri and Herbig disks located within 300 pc, with constraints on the 3.3 $μ$m PAH intensity and with high-resolution ALMA continuum data. The midplane temperature is derived using a power-law or with radiative transfer modeling. The warm dust mass is computed by integrating the flux within the 30 K radius and convert to a dust mass. A strong correlation with a Pearson coefficient of 0.88+/-0.07 between the 3.3 micron PAH intensity and the warm dust mass was found. The correlation is driven by the combination of deep upper limits and strong detections corresponding to a range of warm dust masses. Possible correlations with other disk properties like FUV radiation field or total dust mass are much weaker. Correlations with PAH features at 6.2, 8.6 and 11.3 micron are potentially weaker, but this could be explained by the smaller sample for which these data were available. The correlation is consistent with the hypothesis that PAHs are generally frozen out on pebbles in disks, and are only revealed in the gas phase if those pebbles have drifted towards warm dust traps inside the 30 K radius and vertically transported upwards to the disk atmosphere with sufficiently high temperature to sublimate PAHs into the gas phase. This is similar to previous findings on complex organic molecules in protoplanetary disks and provides further evidence that the chemical composition of the disk is governed by pebble transport.

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arXiv2025

The rapid formation of macromolecules in irradiated ice of protoplanetary disk dust traps

Organic macromolecular matter is the dominant carrier of volatile elements such as carbon, nitrogen, and noble gases in chondrites -- the rocky building blocks from which Earth formed. How this macromolecular substance formed in space is unclear. We show that its formation could be associated with the presence of dust traps, which are prominent mechanisms for forming planetesimals in planet-forming disks. We demonstrate the existence of heavily irradiated zones in dust traps, where small frozen molecules that coat large quantities of microscopic dust grains could be rapidly converted into macromolecular matter by receiving radiation doses of up to several 10s of eV molecule$^{-1}$ year$^{-1}$. This allows for the transformation of simple molecules into complex macromolecular matter within several decades. Up to roughly 4$\%$ of the total disk ice reservoir can be processed this way and subsequently incorporated into the protoplanetary disk midplane where planetesimals form. This finding shows that planetesimal formation and the production of organic macromolecular matter, which provides the essential elemental building blocks for life, might be linked.

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arXiv2024

Evidence for Abiotic Dimethyl Sulfide in Cometary Matter

Technological progress related to astronomical observatories such as the recently launched James Webb Space Telescope (JWST) allows searching for signs of life beyond our Solar System, namely in the form of unambiguous biosignature gases in exoplanetary atmospheres. The tentative assignment of a $1-2.4σ$ spectral feature observed with JWST in the atmosphere of exoplanet K2-18b to the biosignature gas dimethyl sulfide (DMS; sum formula C$_2$H$_6$S) raised hopes that, although controversial, a second genesis had been found. Terrestrial atmospheric DMS is exclusively stemming from marine biological activity and no natural abiotic source has been identified - neither on Earth nor in space. Therefore, DMS is considered a robust biosignature. Since comets possess a pristine inventory of complex organic molecules of abiotic origin, we have searched high-resolution mass spectra collected at comet 67P/Churyumov-Gerasimenko, target of the European Space Agency's Rosetta mission, for the signatures of DMS. Previous work reported the presence of a C2H6S signal when the comet was near its equinox but distinction of DMS from its structural isomer ethanethiol remained elusive. Here we reassess these and evaluate additional data. Based on differences in the electron ionization induced fragmentation pattern of the two isomers, we show that DMS is significantly better compatible with the observations. Deviations between expected and observed signal intensities for DMS are $<1σ$, while for ethanethiol they are $2-4σ$. The local abundance of DMS relative to methanol deduced from these data is (0.13$\pm$0.04)%. Our results provide the first evidence for the existence of an abiotic synthetic pathway to DMS in pristine cometary matter and hence motivate more detailed studies of the sulfur chemistry in such matter and its analogs. [...]

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arXiv2023

Volatiles in the H$_2$O and CO$_2$ ices of comet 67P/Churyumov-Gerasimenko

ESA's Rosetta spacecraft at comet 67P/Churyumov-Gerasimenko (67P) was the first mission that accompanied a comet over a substantial fraction of its orbit. On board was the ROSINA mass spectrometer suite to measure the local densities of the volatile species sublimating from the ices inside the comet's nucleus. Understanding the nature of these ices was a key goal of Rosetta. We analyzed the primary cometary molecules at 67P, namely H$_2$O and CO$_2$, together with a suite of minor species for almost the entire mission. Our investigation reveals that the local abundances of highly volatile species, such as CH$_4$ and CO, are reproduced by a linear combination of both H$_2$O and CO$_2$ densities. These findings bear similarities to laboratory-based temperature programmed desorption experiments of amorphous ices and imply that highly volatile species are trapped in H$_2$O and CO$_2$ ices. Our results do not show the presence of ices dominated by these highly volatile molecules. Most likely, they were lost due to thermal processing of 67P's interior prior to its deflection to the inner solar system. Deviations in the proportions co-released with H$_2$O and CO$_2$ can only be observed before the inbound equinox, when the comet was still far from the sun and the abundance of highly volatile molecules associated with CO$_2$ outgassing were lower. The corresponding CO$_2$ is likely seasonal frost, which sublimated and lost its trapped highly volatile species before re-freezing during the previous apparition. CO, on the other hand, was elevated during the same time and requires further investigation.

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arXiv2023

Synergies between interstellar dust and heliospheric science with an Interstellar Probe

We discuss the synergies between heliospheric and dust science, the open science questions, the technological endeavors and programmatic aspects that are important to maintain or develop in the decade to come. In particular, we illustrate how we can use interstellar dust in the solar system as a tracer for the (dynamic) heliosphere properties, and emphasize the fairly unexplored, but potentially important science question of the role of cosmic dust in heliospheric and astrospheric physics. We show that an Interstellar Probe mission with a dedicated dust suite would bring unprecedented advances to interstellar dust research, and can also contribute-through measuring dust - to heliospheric science. This can, in particular, be done well if we work in synergy with other missions inside the solar system, thereby using multiple vantage points in space to measure the dust as it `rolls' into the heliosphere. Such synergies between missions inside the solar system and far out are crucial for disentangling the spatially and temporally varying dust flow. Finally, we highlight the relevant instrumentation and its suitability for contributing to finding answers to the research questions.

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arXiv2022

Predicting binding energies of astrochemically relevant molecules via machine learning

The behaviour of molecules in space is to a large extent governed by where they freeze out or sublimate. The molecular binding energy is thus an important parameter for many astrochemical studies. This parameter is usually determined with time-consuming experiments, computationally expensive quantum chemical calculations, or the inexpensive, but inaccurate, linear addition method. In this work we propose a new method based on machine learning for predicting binding energies that is accurate, yet computationally inexpensive. A machine learning model based on Gaussian Process Regression is created and trained on a database of binding energies of molecules collected from laboratory experiments presented in the literature. The molecules in the database are categorized by their features, such as mono- or multilayer coverage, binding surface, functional groups, valence electrons, and H-bond acceptors and donors. The performance of the model is assessed with five-fold and leave-one-molecule-out cross validation. Predictions are generally accurate, with differences between predicted and literature binding energies values of less than $\pm$20\%. The validated model is used to predict the binding energies of twenty one molecules that have recently been detected in the interstellar medium, but for which binding energy values are not known. A simplified model is used to visualize where the snowlines of these molecules would be located in a protoplanetary disk. This work demonstrates that machine learning can be employed to accurately and rapidly predict binding energies of molecules. Machine learning complements current laboratory experiments and quantum chemical computational studies. The predicted binding energies will find use in the modelling of astrochemical and planet-forming environments.

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arXiv2022

The prebiotic molecular inventory of Serpens SMM1: II. The building blocks of peptide chains

This work aims to constrain the abundances of interstellar amides, by searching for this group of prebiotic molecules in the intermediate-mass protostar Serpens SMM1-a. ALMA observations are conducted toward Serpens SMM1. A spectrum is extracted toward the SMM1-a position and analyzed with the CASSIS line analysis software for the presence of characteristic rotational lines of a number of amides and other molecules. NH$_{2}$CHO, NH$_{2}$CHO $ν_{12}$=1, NH$_{2}^{13}$CHO, CH$_{3}$C(O)NH$_{2}$ $ν$=0,1, CH$_{2}$DOH, CH$_{3}$CHO, and CH$_{3}$C(O)CH$_{3}$ are securely detected, while trans-NHDCHO, NH$_{2}$CDO, CH$_{3}$NHCHO $ν$=0,1, CH$_{3}$COOH, and HOCH$_{2}$CHO are tentatively identified. The results of this work are compared with detections presented in the literature. A uniform CH$_{3}$C(O)NH$_{2}$/NH$_{2}$CHO ratio is found for a group of interstellar sources with vast physical differences. A similar ratio is seen for CH$_{3}$NHCHO, based on a smaller data sample. The D/H ratio of NH$_{2}$CHO is about 1--3\% and is close to values found in the low-mass source IRAS~16293--2422B. The formation of CH$_{3}$C(O)NH$_{2}$ and NH$_{2}$CHO is likely linked. Formation of these molecules on grain surfaces during the dark cloud stage is a likely scenario. The high D/H ratio of NH$_{2}$CHO is also seen as an indication that these molecules are formed on icy dust grains. As a direct consequence, amides are expected to be present in the most pristine material from which planetary systems form, thus providing a reservoir of prebiotic material.

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arXiv2020

Detecting the elemental and molecular signatures of life: Laser-based mass spectrometry technologies

The identification of extraterrestrial life is one the most exciting and challenging endeavors in space research. The existence of extinct or extant life can be inferred from biogenic elements, isotopes, and molecules, but accurate and sensitive instruments are needed. In this whitepaper we show that Laser-based Mass Spectrometers are promising instrument for the in situ identification of atomic, isotopic, and molecular biosignatures. An overview of Laser ablation/Ionization Mass Spectrometry (LIMS) and Laser Desorption/Ionization Mass Spectrometry (LD-MS) instruments developed for space exploration is given. Their uses are discussed in the context of a Mars scenario and a Europa scenario. We show that Laser-based Mass Spectrometers are versatile and technologically mature instruments with many beneficial characteristics for the detection of life. Future planetary lander and rover missions should be encouraged to make use of Laser-based Mass Spectrometry instruments in their scientific payload.

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arXiv2020

The family of amide molecules toward NGC 6334I

Amide molecules produced in space could play a key role in the formation of biomolecules on a young planetary object. However, the formation and chemical network of amide molecules in space is not well understood. In this work, ALMA observations are used to study a number of amide(-like) molecules toward the high-mass star-forming region NGC 6334I. The first detections of cyanamide (NH$_{2}$CN), acetamide (CH$_{3}$C(O)NH$_{2}$) and N-methylformamide (CH$_{3}$NHCHO) are presented for this source. These are combined with analyses of isocyanic acid (HNCO) and formamide (NH$_{2}$CHO) and a tentative detection of urea (carbamide; NH$_{2}$C(O)NH$_{2}$). Abundance correlations show that most amides are likely formed in related reactions occurring in ices on interstellar dust grains in NGC 6334I. However, in an expanded sample of sources, large abundance variations are seen for NH$_{2}$CN that seem to depend on the source type, which suggests that the physical conditions within the source heavily influence the production of this species. The rich amide inventory of NGC 6334I strengthens the case that interstellar molecules can contribute to the emergence of biomolecules on planets.

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arXiv2019

Molecular complexity on disk-scales uncovered by ALMA: The chemical composition of the high-mass protostar AFGL 4176

The chemical composition of high-mass protostars reflects the physical evolution associated with different stages of star formation. In this study, the molecular inventory of the forming high-mass star AFGL 4176 is studied in detail at high angular resolution (~0.35 arcsec) using ALMA. This high resolution makes it possible to separate the emission associated with the inner hot envelope and disk around the forming star from that of its cool outer envelope. In addition, the high sensitivity of ALMA makes it possible to identify weak and optically thin lines and allows for many isotopologues to be detected, providing a more complete and accurate inventory of the source. A total of 23 different molecular species and their isotopologues are detected in the spectrum towards AFGL 4176. The most abundant species is methanol (CH3OH), remaining species are present at levels between 0.003 % and 15 % with respect to CH3OH. Hints that N-bearing species peak slightly closer to the location of the peak continuum emission than the O-bearing species are seen. AFGL 4176 comprises a rich chemical inventory including many complex species present on disk-scales. On average, the derived column density ratios with respect to methanol of O-bearing species are higher than those derived for N-bearing species by a factor of three. This may indicate that AFGL 4176 is a relatively young source since nitrogen chemistry generally takes longer to evolve in the gas-phase. Taking methanol as a reference, the composition of AFGL 4176 more closely resembles that of the low-mass protostar IRAS 16293-2422B than that of high-mass star-forming regions located near the Galactic centre. This similarity hints that the chemical composition of complex species is already set in the cold cloud stage and implies that AFGL 4176 is a young source whose chemical composition has not yet been strongly processed by the central protostar.

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arXiv2018

Linking interstellar and cometary O$_2$: a deep search for $^{16}$O$^{18}$O in the solar-type protostar IRAS 16293--2422

Recent measurements carried out at comet 67P/C-G with the ${\it Rosetta}$ probe revealed that molecular oxygen, O$_2$, is the fourth most abundant molecule in comets. Models show that O$_2$ is likely of primordial nature, coming from the interstellar cloud from which our Solar System was formed. However, gaseous O$_2$ is an elusive molecule in the interstellar medium with only one detection towards quiescent molecular clouds, in the $ρ$ Oph A core. We perform a deep search for molecular oxygen, through the $2_1 - 0_1$ rotational transition at 234 GHz of its $^{16}$O$^{18}$O isotopologue, towards the warm compact gas surrounding the nearby Class 0 protostar IRAS 16293--2422 B with the ALMA interferometer. The targeted $^{16}$O$^{18}$O transition is surrounded by two brighter transitions at $\pm 1$ km s$^{-1}$ relative to the expected $^{16}$O$^{18}$O transition frequency. After subtraction of these two transitions, residual emission at a 3$σ$ level remains, but with a velocity offset of $0.3 - 0.5$ km s$^{-1}$ relative to the source velocity, rendering the detection "tentative". We derive the O$_2$ column density for two excitation temperatures $T_{\rm ex}$ of 125 and 300 K, as indicated by other molecules, in order to compare the O$_2$ abundance between IRAS16293 and comet 67P/C-G. Assuming that $^{16}$O$^{18}$O is not detected and using methanol CH$_3$OH as a reference species, we obtain a [O$_2$]/[CH$_3$OH] abundance ratio lower than $2-5$, depending on the assumed $T_{\rm ex}$, a three to four times lower abundance than the [O$_2$]/[CH$_3$OH] ratio of $5-15$ found in comet 67P/C-G. Such a low O$_2$ abundance could be explained by the lower temperature of the dense cloud precursor of IRAS16293 with respect to the one at the origin of our Solar System that prevented an efficient formation of O$_2$ in interstellar ices.

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arXiv2018

Low levels of methanol deuteration in the high-mass star-forming region NGC 6334I

The abundance of deuterated molecules in a star-forming region is sensitive to the environment in which they are formed. Deuteration fractions therefore provide a powerful tool for studying the physical and chemical evolution of a star-forming system. While local low-mass star-forming regions show very high deuteration ratios, much lower fractions are observed towards Orion and the Galactic Centre. We derive methanol deuteration fractions at a number of locations towards the high-mass star-forming region NGC 6334I, located at a mean distance of 1.3 kpc, and discuss how these can shed light on the conditions prevailing during its formation. We use high sensitivity, high spatial and spectral resolution observations obtained with ALMA to study transitions of the less abundant, optically thin, methanol-isotopologues: (13)CH3OH, CH3(18)OH, CH2DOH and CH3OD, detected towards NGC 6334I. Assuming LTE and excitation temperatures of 120-330 K, we derive column densities for each of the species and use these to infer CH2DOH/CH3OH and CH3OD/CH3OH fractions. Interestingly, the column densities of CH3OD are consistently higher than those of CH2DOH throughout the region. All regions studied in this work show CH2DOH/CH3OH as well as CH2DOH/CH3OD ratios that are considerably lower than those derived towards low-mass star-forming regions and slightly lower than those derived for the high-mass star-forming regions in Orion and the Galactic Centre. The low ratios indicate a grain surface temperature during formation ~30 K, for which the efficiency of the formation of deuterated species is significantly reduced.

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arXiv2016

The (w)hole survey: an unbiased sample study of transition disk candidates based on Spitzer catalogs

Understanding disk evolution and dissipation is essential for studies of planet formation. Transition disks, i.e., disks with large dust cavities and gaps, are promising candidates of active evolution. About two dozen SED-selected candidates have been confirmed to have dust cavities through millimeter interferometric imaging, but this sample is biased towards the brightest disks. The Spitzer surveys of nearby low-mass star forming regions have resulted in more than 4000 Young Stellar Objects (YSOs). Using color criteria we have selected a sample of ~150 candidates, and an additional 40 candidates and known transition disks from the literature. The Spitzer data were complemented by new observations at longer wavelengths, including new JCMT and APEX submillimeter photometry, and WISE and Herschel-PACS mid and far-infrared photometry. Furthermore, optical spectroscopy was obtained and stellar types were derived for 85% of the sample, including information from the literature. The SEDs were fit to a grid of RADMC-3D disk models with a limited number of parameters: disk mass, inner disk mass, scale height and flaring, and disk cavity radius, where the latter is the main parameter of interest. A large fraction of the targets possibly have dust cavities based on the SED. The derived cavity sizes are consistent with imaging/modeling results in the literature, where available. Trends are found with Ldisk/Lstar and stellar mass and a possible connection with exoplanet orbital radii. A comparison with a previous study where color observables are used (Cieza et al. 2010) reveals large overlap between their category of planet-forming disks and our transition disks with cavities. A large number of the new transition disk candidates are suitable for follow-up observations with ALMA.

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