arXiv subjects

Nieves R. Brisaboa

Publications and source records attributed to Nieves R. Brisaboa.

At least 19 recordsLinked to original sources

arXiv2022

Space/time-efficient RDF stores based on circular suffix sorting

In recent years, RDF has gained popularity as a format for the standardized publication and exchange of information in the Web of Data. In this paper we introduce RDFCSA, a data structure that is able to self-index an RDF dataset in small space and supports efficient querying. RDFCSA regards the triples of the RDF store as short circular strings and applies suffix sorting on those strings, so that triple-pattern queries reduce to prefix searching on the string set. The RDF store is then represented compactly using a Compressed Suffix Array (CSA), a proved technology in text indexing that efficiently supports prefix searches. Our experiments show that RDFCSA provides a compact RDF representation, using less than 60% of the space required by the raw data, and yields fast and consistent query times when answering triple-pattern queries (a few microseconds per result). We also support join queries, a key component of most SPARQL queries. RDFCSA is shown to provide an excellent space/time tradeoff, typically using much less space than alternatives that compete in time.

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arXiv2020

Semantrix: A Compressed Semantic Matrix

We present a compact data structure to represent both the duration and length of homogeneous segments of trajectories from moving objects in a way that, as a data warehouse, it allows us to efficiently answer cumulative queries. The division of trajectories into relevant segments has been studied in the literature under the topic of Trajectory Segmentation. In this paper, we design a data structure to compactly represent them and the algorithms to answer the more relevant queries. We experimentally evaluate our proposal in the real context of an enterprise with mobile workers (truck drivers) where we aim at analyzing the time they spend in different activities. To test our proposal under higher stress conditions we generated a huge amount of synthetic realistic trajectories and evaluated our system with those data to have a good idea about its space needs and its efficiency when answering different types of queries.

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arXiv2020

Revisiting compact RDF stores based on k2-trees

We present a new compact representation to efficiently store and query large RDF datasets in main memory. Our proposal, called BMatrix, is based on the k2-tree, a data structure devised to represent binary matrices in a compressed way, and aims at improving the results of previous state-of-the-art alternatives, especially in datasets with a relatively large number of predicates. We introduce our technique, together with some improvements on the basic k2-tree that can be applied to our solution in order to boost compression. Experimental results in the flagship RDF dataset DBPedia show that our proposal achieves better compression than existing alternatives, while yielding competitive query times, particularly in the most frequent triple patterns and in queries with unbound predicate, in which we outperform existing solutions.

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arXiv2019

Grammar Compressed Sequences with Rank/Select Support

Sequence representations supporting not only direct access to their symbols, but also rank/select operations, are a fundamental building block in many compressed data structures. Several recent applications need to represent highly repetitive sequences, and classical statistical compression proves ineffective. We introduce, instead, grammar-based representations for repetitive sequences, which use up to 6% of the space needed by statistically compressed representations, and support direct access and rank/select operations within tens of microseconds. We demonstrate the impact of our structures in text indexing applications.

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arXiv2019

New structures to solve aggregated queries for trips over public transportation networks

Representing the trajectories of mobile objects is a hot topic from the widespread use of smartphones and other GPS devices. However, few works have focused on representing trips over public transportation networks (buses, subway, and trains) where a user's trips can be seen as a sequence of stages performed within a vehicle shared with many other users. In this context, representing vehicle journeys reduces the redundancy because all the passengers inside a vehicle share the same arrival time for each stop. In addition, each vehicle journey follows exactly the sequence of stops corresponding to its line, which makes it unnecessary to represent that sequence for each journey. To solve data management for transportation systems, we designed a conceptual model that gave us a better insight into this data domain and allowed us the definition of relevant terms and the detection of redundancy sources among those data. Then, we designed two compact representations focused on users' trips (TTCTR) and on vehicle trips (AcumM), respectively. Each approach owns some strengths and is able to answer some queries efficiently. We include experimental results over synthetic trips generated from accurate schedules obtained from a real network description (from the bus transportation system of Madrid) to show the space/time trade-off of both approaches. We considered a wide range of different queries about the use of the transportation network such as counting-based or aggregate queries regarding the load of any line of the network at different times.

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arXiv2019

Extending General Compact Querieable Representations to GIS Applications

The raster model is commonly used for the representation of images in many domains, and is especially useful in Geographic Information Systems (GIS) to store information about continuous variables of the space (elevation, temperature, etc.). Current representations of raster data are usually designed for external memory or, when stored in main memory, lack efficient query capabilities. In this paper we propose compact representations to efficiently store and query raster datasets in main memory. We present different representations for binary raster data, general raster data and time-evolving raster data. We experimentally compare our proposals with traditional storage mechanisms such as linear quadtrees or compressed GeoTIFF files. Results show that our structures are up to 10 times smaller than classical linear quadtrees, and even comparable in space to non-querieable representations of raster data, while efficiently answering a number of typical queries.

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arXiv2019

Improved Compressed String Dictionaries

We introduce a new family of compressed data structures to efficiently store and query large string dictionaries in main memory. Our main technique is a combination of hierarchical Front-coding with ideas from longest-common-prefix computation in suffix arrays. Our data structures yield relevant space-time tradeoffs in real-world dictionaries. We focus on two domains where string dictionaries are extensively used and efficient compression is required: URL collections, a key element in Web graphs and applications such as Web mining; and collections of URIs and literals, the basic components of RDF datasets. Our experiments show that our data structures achieve better compression than the state-of-the-art alternatives while providing very competitive query times.

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arXiv2019

GraCT: A Grammar-based Compressed Index for Trajectory Data

We introduce a compressed data structure for the storage of free trajectories of moving objects (such as ships and planes) that efficiently supports various spatio-temporal queries. Our structure, dubbed GraCT, stores the absolute positions of all the objects at regular time intervals (snapshots) using a $k^2$-tree, which is a space- and time-efficient version of a region quadtree. Positions between snapshots are represented as logs of relative movements and compressed using Re-Pair, a grammar-based compressor. The nonterminals of this grammar are enhanced with MBR information to enable fast queries. The GraCT structure of a dataset occupies less than the raw data compressed with a powerful traditional compressor such as p7zip. Further, instead of requiring full decompression to access the data like a traditional compressor, GraCT supports direct access to object trajectories or to their position at specific time instants, as well as spatial range and nearest-neighbor queries on time instants and/or time intervals. Compared to traditional methods for storing and indexing spatio-temporal data, GraCT requires two orders of magnitude less space, and is competitive in query times. In particular, thanks to its compressed representation, the GraCT structure may reside in main memory in situations where any classical uncompressed index must resort to disk, thereby being one or two orders of magnitude faster.

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arXiv2019

Dv2v: A Dynamic Variable-to-Variable Compressor

We present Dv2v, a new dynamic (one-pass) variable-to-variable compressor. Variable-to-variable compression aims at using a modeler that gathers variable-length input symbols and a variable-length statistical coder that assigns shorter codewords to the more frequent symbols. In Dv2v, we process the input text word-wise to gather variable-length symbols that can be either terminals (new words) or non-terminals, subsequences of words seen before in the input text. Those input symbols are set in a vocabulary that is kept sorted by frequency. Therefore, those symbols can be easily encoded with dense codes. Our Dv2v permits real-time transmission of data, i.e. compression/transmission can begin as soon as data become available. Our experiments show that Dv2v is able to overcome the compression ratios of the v2vDC, the state-of-the-art semi-static variable-to-variable compressor, and to almost reach p7zip values. It also draws a competitive performance at both compression and decompression.

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arXiv2018

A Grammar-based Compressed Representation of 3D Trajectories

Much research has been published about trajectory management on the ground or at the sea, but compression or indexing of flight trajectories have usually been less explored. However, air traffic management is a challenge because airspace is becoming more and more congested, and large flight data collections must be preserved and exploited for varied purposes. This paper proposes 3DGraCT, a new method for representing these flight trajectories. It extends the GraCT compact data structure to cope with a third dimension (altitude), while retaining its space/time complexities. 3DGraCT improves space requirements of traditional spatio-temporal data structures by two orders of magnitude, being competitive for the considered types of queries, even leading the comparison for a particular one.

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arXiv2018

Using Compressed Suffix-Arrays for a Compact Representation of Temporal-Graphs

Temporal graphs represent binary relationships that change along time. They can model the dynamism of, for example, social and communication networks. Temporal graphs are defined as sets of contacts that are edges tagged with the temporal intervals when they are active. This work explores the use of the Compressed Suffix Array (CSA), a well-known compact and self-indexed data structure in the area of text indexing, to represent large temporal graphs. The new structure, called Temporal Graph CSA (TGCSA), is experimentally compared with the most competitive compact data structures in the state-of-the-art, namely, EDGELOG and CET. The experimental results show that TGCSA obtains a good space-time trade-off. It uses a reasonable space and is efficient for solving complex temporal queries. Furthermore, TGCSA has wider expressive capabilities than EDGELOG and CET, because it is able to represent temporal graphs where contacts on an edge can temporally overlap.

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arXiv2018

A Compact Representation for Trips over Networks built on self-indexes

Representing the movements of objects (trips) over a network in a compact way while retaining the capability of exploiting such data effectively is an important challenge of real applications. We present a new Compact Trip Representation (CTR) that handles the spatio-temporal data associated with users' trips over transportation networks. Depending on the network and types of queries, nodes in the network can represent intersections, stops, or even street segments. CTR represents separately sequences of nodes and the time instants when users traverse these nodes. The spatial component is handled with a data structure based on the well-known Compressed Suffix Array (CSA), which provides both a compact representation and interesting indexing capabilities. The temporal component is self-indexed with either a Hu-Tucker-shaped Wavelet-tree or a Wavelet Matrix that solve range-interval queries efficiently. We show how CTR can solve relevant counting-based spatial, temporal, and spatio-temporal queries over large sets of trips. Experimental results show the space requirements (around 50-70% of the space needed by a compact non-indexed baseline) and query efficiency (most queries are solved in the range of 1-1000 microseconds) of CTR.

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arXiv2018

Relative compression of trajectories

We present RCT, a new compact data structure to represent trajectories of objects. It is based on a relative compression technique called Relative Lempel-Ziv (RLZ), which compresses sequences by applying an LZ77 encoding with respect to an artificial reference. Combined with $O(z)$-sized data structures on the sequence of phrases that allows to solve trajectory and spatio-temporal queries efficiently. We plan that RCT improves in compression and time performance the previous compressed representations in the state of the art.

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arXiv2018

Compact Representations of Event Sequences

We introduce a new technique for the efficient management of large sequences of multidimensional data, which takes advantage of regularities that arise in real-world datasets and supports different types of aggregation queries. More importantly, our representation is flexible in the sense that the relevant dimensions and queries may be used to guide the construction process, easily providing a space-time tradeoff depending on the relevant queries in the domain. We provide two alternative representations for sequences of multidimensional data and describe the techniques to efficiently store the datasets and to perform aggregation queries over the compressed representation. We perform experimental evaluation on realistic datasets, showing the space efficiency and query capabilities of our proposal.

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arXiv2018

Two-Dimensional Block Trees

The Block Tree (BT) is a novel compact data structure designed to compress sequence collections. It obtains compression ratios close to Lempel-Ziv and supports efficient direct access to any substring. The BT divides the text recursively into fixed-size blocks and those appearing earlier are represented with pointers. On repetitive collections, a few blocks can represent all the others, and thus the BT reduces the size by orders of magnitude. In this paper we extend the BT to two dimensions, to exploit repetitiveness in collections of images, graphs, and maps. This two-dimensional Block Tree divides the image regularly into subimages and replaces some of them by pointers to other occurrences thereof. We develop a specific variant aimed at compressing the adjacency matrices of Web graphs, obtaining space reductions of up to 50\% compared with the $k^2$-tree, which is the best alternative supporting direct and reverse navigation in the graph.

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arXiv2017

Efficient Compression and Indexing of Trajectories

We present a new compressed representation of free trajectories of moving objects. It combines a partial-sums-based structure that retrieves in constant time the position of the object at any instant, with a hierarchical minimum-bounding-boxes representation that allows determining if the object is seen in a certain rectangular area during a time period. Combined with spatial snapshots at regular intervals, the representation is shown to outperform classical ones by orders of magnitude in space, and also to outperform previous compressed representations in time performance, when using the same amount of space.

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arXiv2017

Compressed Representation of Dynamic Binary Relations with Applications

We introduce a dynamic data structure for the compact representation of binary relations $\mathcal{R} \subseteq A \times B$. The data structure is a dynamic variant of the k$^2$-tree, a static compact representation that takes advantage of clustering in the binary relation to achieve compression. Our structure can efficiently check whether two objects $(a,b) \in A \times B$ are related, and list the objects of $B$ related to some $a \in A$ and vice versa. Additionally, our structure allows inserting and deleting pairs $(a,b)$ in the relation, as well as modifying the base sets $A$ and $B$. We test our dynamic data structure in different contexts, including the representation of Web graphs and RDF databases. Our experiments show that our dynamic data structure achieves good compression ratios and fast query times, close to those of a static representation, while also providing efficient support for updates in the represented binary relation.

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arXiv2017

A succinct data structure for self-indexing ternary relations

The representation of binary relations has been intensively studied and many different theoretical and practical representations have been proposed to answer the usual queries in multiple domains. However, ternary relations have not received as much attention, even though many real-world applications require the processing of ternary relations. In this paper we present a new compressed and self-indexed data structure that we call Interleaved $K^2$-tree (I$K^2$-tree), designed to compactly represent and efficiently query general ternary relations. The I$K^2$-tree is an evolution of an existing data structure, the $K^2$-tree, initially designed to represent Web graphs and later applied to other domains. The I$K^2$-tree is able to extend the $K^2$-tree to represent a ternary relation, based on the idea of decomposing it into a collection of binary relations but providing indexing capabilities in all the three dimensions. We present different ways to use I$K^2$-tree to model different types of ternary relations using as reference two typical domains: RDF and Temporal Graphs. We also experimentally evaluate our representations comparing them in space usage and performance with other solutions of the state of the art.

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