arXiv subjects

Nilanjan Ray

Publications and source records attributed to Nilanjan Ray.

45 records · Page 3Linked to original sources

arXiv2018

Cell Detection in Microscopy Images with Deep Convolutional Neural Network and Compressed Sensing

The ability to automatically detect certain types of cells or cellular subunits in microscopy images is of significant interest to a wide range of biomedical research and clinical practices. Cell detection methods have evolved from employing hand-crafted features to deep learning-based techniques. The essential idea of these methods is that their cell classifiers or detectors are trained in the pixel space, where the locations of target cells are labeled. In this paper, we seek a different route and propose a convolutional neural network (CNN)-based cell detection method that uses encoding of the output pixel space. For the cell detection problem, the output space is the sparsely labeled pixel locations indicating cell centers. We employ random projections to encode the output space to a compressed vector of fixed dimension. Then, CNN regresses this compressed vector from the input pixels. Furthermore, it is possible to stably recover sparse cell locations on the output pixel space from the predicted compressed vector using $L_1$-norm optimization. In the past, output space encoding using compressed sensing (CS) has been used in conjunction with linear and non-linear predictors. To the best of our knowledge, this is the first successful use of CNN with CS-based output space encoding. We made substantial experiments on several benchmark datasets, where the proposed CNN + CS framework (referred to as CNNCS) achieved the highest or at least top-3 performance in terms of F1-score, compared with other state-of-the-art methods.

cs.CV↗

arXiv2018

Generative Adversarial Networks using Adaptive Convolution

Most existing GANs architectures that generate images use transposed convolution or resize-convolution as their upsampling algorithm from lower to higher resolution feature maps in the generator. We argue that this kind of fixed operation is problematic for GANs to model objects that have very different visual appearances. We propose a novel adaptive convolution method that learns the upsampling algorithm based on the local context at each location to address this problem. We modify a baseline GANs architecture by replacing normal convolutions with adaptive convolutions in the generator. Experiments on CIFAR-10 dataset show that our modified models improve the baseline model by a large margin. Furthermore, our models achieve state-of-the-art performance on CIFAR-10 and STL-10 datasets in the unsupervised setting.

cs.CV↗

arXiv2017

Face Recognition using Multi-Modal Low-Rank Dictionary Learning

Face recognition has been widely studied due to its importance in different applications; however, most of the proposed methods fail when face images are occluded or captured under illumination and pose variations. Recently several low-rank dictionary learning methods have been proposed and achieved promising results for noisy observations. While these methods are mostly developed for single-modality scenarios, recent studies demonstrated the advantages of feature fusion from multiple inputs. We propose a multi-modal structured low-rank dictionary learning method for robust face recognition, using raw pixels of face images and their illumination invariant representation. The proposed method learns robust and discriminative representations from contaminated face images, even if there are few training samples with large intra-class variations. Extensive experiments on different datasets validate the superior performance and robustness of our method to severe illumination variations and occlusion.

cs.CV↗

arXiv2016

Joint Projection and Dictionary Learning using Low-rank Regularization and Graph Constraints

In this paper, we aim at learning simultaneously a discriminative dictionary and a robust projection matrix from noisy data. The joint learning, makes the learned projection and dictionary a better fit for each other, so a more accurate classification can be obtained. However, current prevailing joint dimensionality reduction and dictionary learning methods, would fail when the training samples are noisy or heavily corrupted. To address this issue, we propose a joint projection and dictionary learning using low-rank regularization and graph constraints (JPDL-LR). Specifically, the discrimination of the dictionary is achieved by imposing Fisher criterion on the coding coefficients. In addition, our method explicitly encodes the local structure of data by incorporating a graph regularization term, that further improves the discriminative ability of the projection matrix. Inspired by recent advances of low-rank representation for removing outliers and noise, we enforce a low-rank constraint on sub-dictionaries of all classes to make them more compact and robust to noise. Experimental results on several benchmark datasets verify the effectiveness and robustness of our method for both dimensionality reduction and image classification, especially when the data contains considerable noise or variations.

cs.CV↗

arXiv2016

Object Classification with Joint Projection and Low-rank Dictionary Learning

For an object classification system, the most critical obstacles towards real-world applications are often caused by large intra-class variability, arising from different lightings, occlusion and corruption, in limited sample sets. Most methods in the literature would fail when the training samples are heavily occluded, corrupted or have significant illumination or viewpoint variations. Besides, most of the existing methods and especially deep learning-based methods, need large training sets to achieve a satisfactory recognition performance. Although using the pre-trained network on a generic large-scale dataset and fine-tune it to the small-sized target dataset is a widely used technique, this would not help when the content of base and target datasets are very different. To address these issues, we propose a joint projection and low-rank dictionary learning method using dual graph constraints (JP-LRDL). The proposed joint learning method would enable us to learn the features on top of which dictionaries can be better learned, from the data with large intra-class variability. Specifically, a structured class-specific dictionary is learned and the discrimination is further improved by imposing a graph constraint on the coding coefficients, that maximizes the intra-class compactness and inter-class separability. We also enforce low-rank and structural incoherence constraints on sub-dictionaries to make them more compact and robust to variations and outliers and reduce the redundancy among them, respectively. To preserve the intrinsic structure of data and penalize unfavourable relationship among training samples simultaneously, we introduce a projection graph into the framework, which significantly enhances the discriminative ability of the projection matrix and makes the method robust to small-sized and high-dimensional datasets.

cs.CV↗

arXiv2016

Deep Deformable Registration: Enhancing Accuracy by Fully Convolutional Neural Net

Deformable registration is ubiquitous in medical image analysis. Many deformable registration methods minimize sum of squared difference (SSD) as the registration cost with respect to deformable model parameters. In this work, we construct a tight upper bound of the SSD registration cost by using a fully convolutional neural network (FCNN) in the registration pipeline. The upper bound SSD (UB-SSD) enhances the original deformable model parameter space by adding a heatmap output from FCNN. Next, we minimize this UB-SSD by adjusting both the parameters of the FCNN and the parameters of the deformable model in coordinate descent. Our coordinate descent framework is end-to-end and can work with any deformable registration method that uses SSD. We demonstrate experimentally that our method enhances the accuracy of deformable registration algorithms significantly on two publicly available 3D brain MRI data sets.

cs.CV↗

arXiv2016

Convolutional Gated Recurrent Networks for Video Segmentation

Semantic segmentation has recently witnessed major progress, where fully convolutional neural networks have shown to perform well. However, most of the previous work focused on improving single image segmentation. To our knowledge, no prior work has made use of temporal video information in a recurrent network. In this paper, we introduce a novel approach to implicitly utilize temporal data in videos for online semantic segmentation. The method relies on a fully convolutional network that is embedded into a gated recurrent architecture. This design receives a sequence of consecutive video frames and outputs the segmentation of the last frame. Convolutional gated recurrent networks are used for the recurrent part to preserve spatial connectivities in the image. Our proposed method can be applied in both online and batch segmentation. This architecture is tested for both binary and semantic video segmentation tasks. Experiments are conducted on the recent benchmarks in SegTrack V2, Davis, CityScapes, and Synthia. Using recurrent fully convolutional networks improved the baseline network performance in all of our experiments. Namely, 5% and 3% improvement of F-measure in SegTrack2 and Davis respectively, 5.7% improvement in mean IoU in Synthia and 3.5% improvement in categorical mean IoU in CityScapes. The performance of the RFCN network depends on its baseline fully convolutional network. Thus RFCN architecture can be seen as a method to improve its baseline segmentation network by exploiting spatiotemporal information in videos.

cs.CV↗

arXiv2016

Recurrent Fully Convolutional Networks for Video Segmentation

Image segmentation is an important step in most visual tasks. While convolutional neural networks have shown to perform well on single image segmentation, to our knowledge, no study has been been done on leveraging recurrent gated architectures for video segmentation. Accordingly, we propose a novel method for online segmentation of video sequences that incorporates temporal data. The network is built from fully convolutional element and recurrent unit that works on a sliding window over the temporal data. We also introduce a novel convolutional gated recurrent unit that preserves the spatial information and reduces the parameters learned. Our method has the advantage that it can work in an online fashion instead of operating over the whole input batch of video frames. The network is tested on the change detection dataset, and proved to have 5.5\% improvement in F-measure over a plain fully convolutional network for per frame segmentation. It was also shown to have improvement of 1.4\% for the F-measure compared to our baseline network that we call FCN 12s.

cs.CV↗

arXiv2003

Universality in the merging dynamics of parametric active contours: a study in MRI-based lung segmentation

Measurement of lung ventilation is one of the most reliable techniques of diagnosing pulmonary diseases. The time consuming and bias prone traditional methods using hyperpolarized H${}^{3}$He and ${}^{1}$H magnetic resonance imageries have recently been improved by an automated technique based on multiple active contour evolution. Mapping results from an equivalent thermodynamic model, here we analyse the fundamental dynamics orchestrating the active contour (AC) method. We show that the numerical method is inherently connected to the universal scaling behavior of a classical nucleation-like dynamics. The favorable comparison of the exponent values with the theoretical model render further credentials to our claim.

cond-mat.soft↗