arXiv subjects

Niloy Ganguly

Publications and source records attributed to Niloy Ganguly.

At least 37 records · Page 2Linked to original sources

arXiv2024

MEDVOC: Vocabulary Adaptation for Fine-tuning Pre-trained Language Models on Medical Text Summarization

This work presents a dynamic vocabulary adaptation strategy, MEDVOC, for fine-tuning pre-trained language models (PLMs) like BertSumAbs, BART, and PEGASUS for improved medical text summarization. In contrast to existing domain adaptation approaches in summarization, MEDVOC treats vocabulary as an optimizable parameter and optimizes the PLM vocabulary based on fragment score conditioned only on the downstream task's reference summaries. Unlike previous works on vocabulary adaptation (limited only to classification tasks), optimizing vocabulary based on summarization tasks requires an extremely costly intermediate fine-tuning step on large summarization datasets. To that end, our novel fragment score-based hyperparameter search very significantly reduces this fine-tuning time -- from 450 days to less than 2 days on average. Furthermore, while previous works on vocabulary adaptation are often primarily tied to single PLMs, MEDVOC is designed to be deployable across multiple PLMs (with varying model vocabulary sizes, pre-training objectives, and model sizes) -- bridging the limited vocabulary overlap between the biomedical literature domain and PLMs. MEDVOC outperforms baselines by 15.74% in terms of Rouge-L in zero-shot setting and shows gains of 17.29% in high Out-Of-Vocabulary (OOV) concentrations. Our human evaluation shows MEDVOC generates more faithful medical summaries (88% compared to 59% in baselines). We make the codebase publicly available at https://github.com/gb-kgp/MEDVOC.

cs.CL↗

arXiv2024

Unlocking Efficiency: Adaptive Masking for Gene Transformer Models

Gene transformer models such as Nucleotide Transformer, DNABert, and LOGO are trained to learn optimal gene sequence representations by using the Masked Language Modeling (MLM) training objective over the complete Human Reference Genome. However, the typical tokenization methods employ a basic sliding window of tokens, such as k-mers, that fail to utilize gene-centric semantics. This could result in the (trivial) masking of easily predictable sequences, leading to inefficient MLM training. Time-variant training strategies are known to improve pretraining efficiency in both language and vision tasks. In this work, we focus on using curriculum masking where we systematically increase the difficulty of masked token prediction task by using a Pointwise Mutual Information-based difficulty criterion, as gene sequences lack well-defined semantic units similar to words or sentences of NLP domain. Our proposed Curriculum Masking-based Gene Masking Strategy (CM-GEMS) demonstrates superior representation learning capabilities compared to baseline masking approaches when evaluated on downstream gene sequence classification tasks. We perform extensive evaluation in both few-shot (five datasets) and full dataset settings (Genomic Understanding Evaluation benchmark consisting of 27 tasks). Our findings reveal that CM-GEMS outperforms state-of-the-art models (DNABert-2, Nucleotide transformer, DNABert) trained at 120K steps, achieving similar results in just 10K and 1K steps. We also demonstrate that Curriculum-Learned LOGO (a 2-layer DNABert-like model) can achieve nearly 90% of the state-of-the-art model performance of 120K steps. We will make the models and codes publicly available at https://github.com/roysoumya/curriculum-GeneMask.

cs.CL↗

arXiv2024

Leveraging the Power of LLMs: A Fine-Tuning Approach for High-Quality Aspect-Based Summarization

The ever-increasing volume of digital information necessitates efficient methods for users to extract key insights from lengthy documents. Aspect-based summarization offers a targeted approach, generating summaries focused on specific aspects within a document. Despite advancements in aspect-based summarization research, there is a continuous quest for improved model performance. Given that large language models (LLMs) have demonstrated the potential to revolutionize diverse tasks within natural language processing, particularly in the problem of summarization, this paper explores the potential of fine-tuning LLMs for the aspect-based summarization task. We evaluate the impact of fine-tuning open-source foundation LLMs, including Llama2, Mistral, Gemma and Aya, on a publicly available domain-specific aspect based summary dataset. We hypothesize that this approach will enable these models to effectively identify and extract aspect-related information, leading to superior quality aspect-based summaries compared to the state-of-the-art. We establish a comprehensive evaluation framework to compare the performance of fine-tuned LLMs against competing aspect-based summarization methods and vanilla counterparts of the fine-tuned LLMs. Our work contributes to the field of aspect-based summarization by demonstrating the efficacy of fine-tuning LLMs for generating high-quality aspect-based summaries. Furthermore, it opens doors for further exploration of using LLMs for targeted information extraction tasks across various NLP domains.

cs.CL↗

arXiv2024

On The Persona-based Summarization of Domain-Specific Documents

In an ever-expanding world of domain-specific knowledge, the increasing complexity of consuming, and storing information necessitates the generation of summaries from large information repositories. However, every persona of a domain has different requirements of information and hence their summarization. For example, in the healthcare domain, a persona-based (such as Doctor, Nurse, Patient etc.) approach is imperative to deliver targeted medical information efficiently. Persona-based summarization of domain-specific information by humans is a high cognitive load task and is generally not preferred. The summaries generated by two different humans have high variability and do not scale in cost and subject matter expertise as domains and personas grow. Further, AI-generated summaries using generic Large Language Models (LLMs) may not necessarily offer satisfactory accuracy for different domains unless they have been specifically trained on domain-specific data and can also be very expensive to use in day-to-day operations. Our contribution in this paper is two-fold: 1) We present an approach to efficiently fine-tune a domain-specific small foundation LLM using a healthcare corpus and also show that we can effectively evaluate the summarization quality using AI-based critiquing. 2) We further show that AI-based critiquing has good concordance with Human-based critiquing of the summaries. Hence, such AI-based pipelines to generate domain-specific persona-based summaries can be easily scaled to other domains such as legal, enterprise documents, education etc. in a very efficient and cost-effective manner.

cs.CL↗

arXiv2024

Parameter-Efficient Instruction Tuning of Large Language Models For Extreme Financial Numeral Labelling

We study the problem of automatically annotating relevant numerals (GAAP metrics) occurring in the financial documents with their corresponding XBRL tags. Different from prior works, we investigate the feasibility of solving this extreme classification problem using a generative paradigm through instruction tuning of Large Language Models (LLMs). To this end, we leverage metric metadata information to frame our target outputs while proposing a parameter efficient solution for the task using LoRA. We perform experiments on two recently released financial numeric labeling datasets. Our proposed model, FLAN-FinXC, achieves new state-of-the-art performances on both the datasets, outperforming several strong baselines. We explain the better scores of our proposed model by demonstrating its capability for zero-shot as well as the least frequently occurring tags. Also, even when we fail to predict the XBRL tags correctly, our generated output has substantial overlap with the ground-truth in majority of the cases.

cs.CL↗

arXiv2024

Instruction-Guided Bullet Point Summarization of Long Financial Earnings Call Transcripts

While automatic summarization techniques have made significant advancements, their primary focus has been on summarizing short news articles or documents that have clear structural patterns like scientific articles or government reports. There has not been much exploration into developing efficient methods for summarizing financial documents, which often contain complex facts and figures. Here, we study the problem of bullet point summarization of long Earning Call Transcripts (ECTs) using the recently released ECTSum dataset. We leverage an unsupervised question-based extractive module followed by a parameter efficient instruction-tuned abstractive module to solve this task. Our proposed model FLAN-FinBPS achieves new state-of-the-art performances outperforming the strongest baseline with 14.88% average ROUGE score gain, and is capable of generating factually consistent bullet point summaries that capture the important facts discussed in the ECTs.

cs.CL↗

arXiv2024

TIGQA:An Expert Annotated Question Answering Dataset in Tigrinya

The absence of explicitly tailored, accessible annotated datasets for educational purposes presents a notable obstacle for NLP tasks in languages with limited resources.This study initially explores the feasibility of using machine translation (MT) to convert an existing dataset into a Tigrinya dataset in SQuAD format. As a result, we present TIGQA, an expert annotated educational dataset consisting of 2.68K question-answer pairs covering 122 diverse topics such as climate, water, and traffic. These pairs are from 537 context paragraphs in publicly accessible Tigrinya and Biology books. Through comprehensive analyses, we demonstrate that the TIGQA dataset requires skills beyond simple word matching, requiring both single-sentence and multiple-sentence inference abilities. We conduct experiments using state-of-the art MRC methods, marking the first exploration of such models on TIGQA. Additionally, we estimate human performance on the dataset and juxtapose it with the results obtained from pretrained models.The notable disparities between human performance and best model performance underscore the potential for further enhancements to TIGQA through continued research. Our dataset is freely accessible via the provided link to encourage the research community to address the challenges in the Tigrinya MRC.

cs.CL↗

arXiv2024

Beyond Accuracy: Investigating Error Types in GPT-4 Responses to USMLE Questions

GPT-4 demonstrates high accuracy in medical QA tasks, leading with an accuracy of 86.70%, followed by Med-PaLM 2 at 86.50%. However, around 14% of errors remain. Additionally, current works use GPT-4 to only predict the correct option without providing any explanation and thus do not provide any insight into the thinking process and reasoning used by GPT-4 or other LLMs. Therefore, we introduce a new domain-specific error taxonomy derived from collaboration with medical students. Our GPT-4 USMLE Error (G4UE) dataset comprises 4153 GPT-4 correct responses and 919 incorrect responses to the United States Medical Licensing Examination (USMLE) respectively. These responses are quite long (258 words on average), containing detailed explanations from GPT-4 justifying the selected option. We then launch a large-scale annotation study using the Potato annotation platform and recruit 44 medical experts through Prolific, a well-known crowdsourcing platform. We annotated 300 out of these 919 incorrect data points at a granular level for different classes and created a multi-label span to identify the reasons behind the error. In our annotated dataset, a substantial portion of GPT-4's incorrect responses is categorized as a "Reasonable response by GPT-4," by annotators. This sheds light on the challenge of discerning explanations that may lead to incorrect options, even among trained medical professionals. We also provide medical concepts and medical semantic predications extracted using the SemRep tool for every data point. We believe that it will aid in evaluating the ability of LLMs to answer complex medical questions. We make the resources available at https://github.com/roysoumya/usmle-gpt4-error-taxonomy .

cs.CL↗

arXiv2024

Cost-Performance Optimization for Processing Low-Resource Language Tasks Using Commercial LLMs

Large Language Models (LLMs) exhibit impressive zero/few-shot inference and generation quality for high-resource languages (HRLs). A few of them have been trained on low-resource languages (LRLs) and give decent performance. Owing to the prohibitive costs of training LLMs, they are usually used as a network service, with the client charged by the count of input and output tokens. The number of tokens strongly depends on the script and language, as well as the LLM's subword vocabulary. We show that LRLs are at a pricing disadvantage, because the well-known LLMs produce more tokens for LRLs than HRLs. This is because most currently popular LLMs are optimized for HRL vocabularies. Our objective is to level the playing field: reduce the cost of processing LRLs in contemporary LLMs while ensuring that predictive and generative qualities are not compromised. As means to reduce the number of tokens processed by the LLM, we consider code-mixing, translation, and transliteration of LRLs to HRLs. We perform an extensive study using the IndicXTREME classification and six generative tasks dataset, covering 15 Indic and 3 other languages, while using GPT-4 (one of the costliest LLM services released so far) as a commercial LLM. We observe and analyze interesting patterns involving token count, cost, and quality across a multitude of languages and tasks. We show that choosing the best policy to interact with the LLM can reduce cost by 90% while giving better or comparable performance compared to communicating with the LLM in the original LRL.

cs.CL↗

arXiv2024

Order-Based Pre-training Strategies for Procedural Text Understanding

In this paper, we propose sequence-based pretraining methods to enhance procedural understanding in natural language processing. Procedural text, containing sequential instructions to accomplish a task, is difficult to understand due to the changing attributes of entities in the context. We focus on recipes, which are commonly represented as ordered instructions, and use this order as a supervision signal. Our work is one of the first to compare several 'order as-supervision' transformer pre-training methods, including Permutation Classification, Embedding Regression, and Skip-Clip, and shows that these methods give improved results compared to the baselines and SoTA LLMs on two downstream Entity-Tracking datasets: NPN-Cooking dataset in recipe domain and ProPara dataset in open domain. Our proposed methods address the non-trivial Entity Tracking Task that requires prediction of entity states across procedure steps, which requires understanding the order of steps. These methods show an improvement over the best baseline by 1.6% and 7-9% on NPN-Cooking and ProPara Datasets respectively across metrics.

cs.CL↗

arXiv2024

How COVID-19 has Impacted the Anti-Vaccine Discourse: A Large-Scale Twitter Study Spanning Pre-COVID and Post-COVID Era

The debate around vaccines has been going on for decades, but the COVID-19 pandemic showed how crucial it is to understand and mitigate anti-vaccine sentiments. While the pandemic may be over, it is still important to understand how the pandemic affected the anti-vaccine discourse, and whether the arguments against non-COVID vaccines (e.g., Flu, MMR, IPV, HPV vaccines) have also changed due to the pandemic. This study attempts to answer these questions through a large-scale study of anti-vaccine posts on Twitter. Almost all prior works that utilized social media to understand anti-vaccine opinions considered only the three broad stances of Anti-Vax, Pro-Vax, and Neutral. There has not been any effort to identify the specific reasons/concerns behind the anti-vax sentiments (e.g., side-effects, conspiracy theories, political reasons) on social media at scale. In this work, we propose two novel methods for classifying tweets into 11 different anti-vax concerns -- a discriminative approach (entailment-based) and a generative approach (based on instruction tuning of LLMs) -- which outperform several strong baselines. We then apply this classifier on anti-vaccine tweets posted over a 5-year period (Jan 2018 - Jan 2023) to understand how the COVID-19 pandemic has impacted the anti-vaccine concerns among the masses. We find that the pandemic has made the anti-vaccine discourse far more complex than in the pre-COVID times, and increased the variety of concerns being voiced. Alarmingly, we find that concerns about COVID vaccines are now being projected onto the non-COVID vaccines, thus making more people hesitant in taking vaccines in the post-COVID era.

cs.SI↗

arXiv2024

How Robust are the Tabular QA Models for Scientific Tables? A Study using Customized Dataset

Question-answering (QA) on hybrid scientific tabular and textual data deals with scientific information, and relies on complex numerical reasoning. In recent years, while tabular QA has seen rapid progress, understanding their robustness on scientific information is lacking due to absence of any benchmark dataset. To investigate the robustness of the existing state-of-the-art QA models on scientific hybrid tabular data, we propose a new dataset, "SciTabQA", consisting of 822 question-answer pairs from scientific tables and their descriptions. With the help of this dataset, we assess the state-of-the-art Tabular QA models based on their ability (i) to use heterogeneous information requiring both structured data (table) and unstructured data (text) and (ii) to perform complex scientific reasoning tasks. In essence, we check the capability of the models to interpret scientific tables and text. Our experiments show that "SciTabQA" is an innovative dataset to study question-answering over scientific heterogeneous data. We benchmark three state-of-the-art Tabular QA models, and find that the best F1 score is only 0.462.

cs.CL↗

arXiv2024

Long Dialog Summarization: An Analysis

Dialog summarization has become increasingly important in managing and comprehending large-scale conversations across various domains. This task presents unique challenges in capturing the key points, context, and nuances of multi-turn long conversations for summarization. It is worth noting that the summarization techniques may vary based on specific requirements such as in a shopping-chatbot scenario, the dialog summary helps to learn user preferences, whereas in the case of a customer call center, the summary may involve the problem attributes that a user specified, and the final resolution provided. This work emphasizes the significance of creating coherent and contextually rich summaries for effective communication in various applications. We explore current state-of-the-art approaches for long dialog summarization in different domains and benchmark metrics based evaluations show that one single model does not perform well across various areas for distinct summarization tasks.

cs.CL↗

arXiv2024

BOXREC: Recommending a Box of Preferred Outfits in Online Shopping

Over the past few years, automation of outfit composition has gained much attention from the research community. Most of the existing outfit recommendation systems focus on pairwise item compatibility prediction (using visual and text features) to score an outfit combination having several items, followed by recommendation of top-n outfits or a capsule wardrobe having a collection of outfits based on user's fashion taste. However, none of these consider user's preference of price-range for individual clothing types or an overall shopping budget for a set of items. In this paper, we propose a box recommendation framework - BOXREC - which at first, collects user preferences across different item types (namely, top-wear, bottom-wear and foot-wear) including price-range of each type and a maximum shopping budget for a particular shopping session. It then generates a set of preferred outfits by retrieving all types of preferred items from the database (according to user specified preferences including price-ranges), creates all possible combinations of three preferred items (belonging to distinct item types) and verifies each combination using an outfit scoring framework - BOXREC-OSF. Finally, it provides a box full of fashion items, such that different combinations of the items maximize the number of outfits suitable for an occasion while satisfying maximum shopping budget. Empirical results show superior performance of BOXREC-OSF over the baseline methods.

cs.IR↗

arXiv2024

IVP-VAE: Modeling EHR Time Series with Initial Value Problem Solvers

Continuous-time models such as Neural ODEs and Neural Flows have shown promising results in analyzing irregularly sampled time series frequently encountered in electronic health records. Based on these models, time series are typically processed with a hybrid of an initial value problem (IVP) solver and a recurrent neural network within the variational autoencoder architecture. Sequentially solving IVPs makes such models computationally less efficient. In this paper, we propose to model time series purely with continuous processes whose state evolution can be approximated directly by IVPs. This eliminates the need for recurrent computation and enables multiple states to evolve in parallel. We further fuse the encoder and decoder with one IVP solver utilizing its invertibility, which leads to fewer parameters and faster convergence. Experiments on three real-world datasets show that the proposed method can systematically outperform its predecessors, achieve state-of-the-art results, and have significant advantages in terms of data efficiency.

cs.LG↗

arXiv2023

CLMSM: A Multi-Task Learning Framework for Pre-training on Procedural Text

In this paper, we propose CLMSM, a domain-specific, continual pre-training framework, that learns from a large set of procedural recipes. CLMSM uses a Multi-Task Learning Framework to optimize two objectives - a) Contrastive Learning using hard triplets to learn fine-grained differences across entities in the procedures, and b) a novel Mask-Step Modelling objective to learn step-wise context of a procedure. We test the performance of CLMSM on the downstream tasks of tracking entities and aligning actions between two procedures on three datasets, one of which is an open-domain dataset not conforming with the pre-training dataset. We show that CLMSM not only outperforms baselines on recipes (in-domain) but is also able to generalize to open-domain procedural NLP tasks.

cs.CL↗

arXiv2023

GeneMask: Fast Pretraining of Gene Sequences to Enable Few-Shot Learning

Large-scale language models such as DNABert and LOGO aim to learn optimal gene representations and are trained on the entire Human Reference Genome. However, standard tokenization schemes involve a simple sliding window of tokens like k-mers that do not leverage any gene-based semantics and thus may lead to (trivial) masking of easily predictable sequences and subsequently inefficient Masked Language Modeling (MLM) training. Therefore, we propose a novel masking algorithm, GeneMask, for MLM training of gene sequences, where we randomly identify positions in a gene sequence as mask centers and locally select the span around the mask center with the highest Normalized Pointwise Mutual Information (NPMI) to mask. We observe that in the absence of human-understandable semantics in the genomics domain (in contrast, semantic units like words and phrases are inherently available in NLP), GeneMask-based models substantially outperform the SOTA models (DNABert and LOGO) over four benchmark gene sequence classification datasets in five few-shot settings (10 to 1000-shot). More significantly, the GeneMask-based DNABert model is trained for less than one-tenth of the number of epochs of the original SOTA model. We also observe a strong correlation between top-ranked PMI tokens and conserved DNA sequence motifs, which may indicate the incorporation of latent genomic information. The codes (including trained models) and datasets are made publicly available at https://github.com/roysoumya/GeneMask.

cs.CL↗

arXiv2023

A Comparative Audit of Privacy Policies from Healthcare Organizations in USA, UK and India

Data privacy in healthcare is of paramount importance (and thus regulated using laws like HIPAA) due to the highly sensitive nature of patient data. To that end, healthcare organizations mention how they collect/process/store/share this data (i.e., data practices) via their privacy policies. Thus there is a need to audit these policies and check compliance with respective laws. This paper addresses this need and presents a large-scale data-driven study to audit privacy policies from healthcare organizations in three countries -- USA, UK, and India. We developed a three-stage novel \textit{workflow} for our audit. First, we collected the privacy policies of thousands of healthcare organizations in these countries and cleaned this privacy policy data using a clustering-based mixed-method technique. We identified data practices regarding users' private medical data (medical history) and site privacy (cookie, logs) in these policies. Second, we adopted a summarization-based technique to uncover exact broad data practices across countries and notice important differences. Finally, we evaluated the cross-country data practices using the lens of legal compliance (with legal expert feedback) and grounded in the theory of Contextual Integrity (CI). Alarmingly, we identified six themes of non-alignment (observed in 21.8\% of data practices studied in India) pointed out by our legal experts. Furthermore, there are four \textit{potential violations} according to case verdicts from Indian Courts as pointed out by our legal experts. We conclude this paper by discussing the utility of our auditing workflow and the implication of our findings for different stakeholders.

cs.CY↗