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Nirav Merchant

Publications and source records attributed to Nirav Merchant.

8 recordsLinked to original sources

Learning to Diagnose Privately: DP-Powered LLMs for Radiology Report Classification

Large Language Models (LLMs) are increasingly adopted across domains such as education, healthcare, and finance. In healthcare, LLMs support tasks including disease diagnosis, abnormality classification, and clinical decision-making. Among these, multi-abnormality classification of radiology reports is critical for clinical workflow automation and biomedical research. Leveraging strong natural language processing capabilities, LLMs enable efficient processing of unstructured medical text and reduce the administrative burden of manual report analysis. To improve performance, LLMs are often fine-tuned on private, institution-specific datasets such as radiology reports. However, this raises significant privacy concerns: LLMs may memorize training data and become vulnerable to data extraction attacks, while sharing fine-tuned models risks exposing sensitive patient information. Despite growing interest in LLMs for medical text classification, privacy-preserving fine-tuning for multi-abnormality classification remains underexplored. To address this gap, we propose a differentially private (DP) fine-tuning framework for multi-abnormality classification from free-text radiology reports. Our approach integrates differential privacy with Low-Rank Adaptation (LoRA) to efficiently fine-tune LLMs on sensitive clinical data while mitigating leakage risks. We further employ labels generated by a larger LLM to train smaller models, enabling efficient inference under strong privacy guarantees. Experiments on MIMIC-CXR and CT-RATE demonstrate the effectiveness of our DP-LoRA framework across varying privacy regimes. On MIMIC-CXR, our method achieves weighted F1-scores up to 0.89 under moderate privacy budgets, approaching non-private LoRA (0.90) and full fine-tuning (0.96), confirming that strong privacy can be achieved with only modest performance trade-offs.

cs.CR

TerraIncognita: A Dynamic Benchmark for Species Discovery Using Frontier Models

The rapid global loss of biodiversity, particularly among insects, represents an urgent ecological crisis. Current methods for insect species discovery are manual, slow, and severely constrained by taxonomic expertise, hindering timely conservation actions. We introduce TerraIncognita, a dynamic benchmark designed to evaluate state-of-the-art multimodal models for the challenging problem of identifying unknown, potentially undescribed insect species from image data. Our benchmark dataset combines a mix of expertly annotated images of insect species likely known to frontier AI models, and images of rare and poorly known species, for which few/no publicly available images exist. These images were collected from underexplored biodiversity hotspots, realistically mimicking open-world discovery scenarios faced by ecologists. The benchmark assesses models' proficiency in hierarchical taxonomic classification, their capability to detect and abstain from out-of-distribution (OOD) samples representing novel species, and their ability to generate explanations aligned with expert taxonomic knowledge. Notably, top-performing models achieve over 90\% F1 at the Order level on known species, but drop below 2\% at the Species level, highlighting the sharp difficulty gradient from coarse to fine taxonomic prediction (Order $\rightarrow$ Family $\rightarrow$ Genus $\rightarrow$ Species). TerraIncognita will be updated regularly, and by committing to quarterly dataset expansions (of both known and novel species), will provide an evolving platform for longitudinal benchmarking of frontier AI methods. All TerraIncognita data, results, and future updates are available \href{https://baskargroup.github.io/TerraIncognita/}{here}.

cs.CV

WeedNet: A Foundation Model-Based Global-to-Local AI Approach for Real-Time Weed Species Identification and Classification

Early weed identification is crucial for effective management and control, and researchers, agronomists, and technology developers are increasingly interested in automating this process using computer vision and artificial intelligence; however, limited expert-verified data and variable morphological features have hindered the development of AI-based weed identification models. To address these issues, we present WeedNet, a global-scale weed identification model that can recognize an extensive set of weed species. WeedNet is an end-to-end real-time weed identification pipeline that uses self-supervised learning, fine-tuning, and enhanced trustworthiness strategies. WeedNet achieved 91.02% accuracy across 1,593 weed species, with 41% of species achieving 100% accuracy. Using a fine-tuning approach, the local Iowa WeedNet model achieved 97.38% overall accuracy for 84 Iowa weeds. Testing across intra-species dissimilarity and inter-species similarity suggests that diversity in the collected image, spanning all growth stages and distinct plant characteristics, is crucial to driving model performance. The global WeedNet model serves as a foundation, and the global-to-local strategy enables targeted fine-tuning to improve performance in regional weed communities. Additional validation of drone- and ground-rover-based images highlights WeedNet's potential for integration into robotic platforms. Furthermore, integration with artificial intelligence for conversational use provides intelligent agricultural and ecological conservation consulting tools for farmers, researchers, and government agencies across diverse landscapes.

cs.CV

AI-VERDE: A Gateway for Egalitarian Access to Large Language Model-Based Resources For Educational Institutions

We present AI-VERDE, a unified LLM-as-a-platform service designed to facilitate seamless integration of commercial, cloud-hosted, and on-premise open LLMs in academic settings. AI-VERDE streamlines access management for instructional and research groups by providing features such as robust access control, privacy-preserving mechanisms, native Retrieval-Augmented Generation (RAG) support, budget management for third-party LLM services, and both a conversational web interface and API access. In a pilot deployment at a large public university, AI-VERDE demonstrated significant engagement across diverse educational and research groups, enabling activities that would typically require substantial budgets for commercial LLM services with limited user and team management capabilities. To the best of our knowledge, AI-Verde is the first platform to address both academic and research needs for LLMs within an higher education institutional framework.

cs.CL

BioTrove: A Large Curated Image Dataset Enabling AI for Biodiversity

We introduce BioTrove, the largest publicly accessible dataset designed to advance AI applications in biodiversity. Curated from the iNaturalist platform and vetted to include only research-grade data, BioTrove contains 161.9 million images, offering unprecedented scale and diversity from three primary kingdoms: Animalia ("animals"), Fungi ("fungi"), and Plantae ("plants"), spanning approximately 366.6K species. Each image is annotated with scientific names, taxonomic hierarchies, and common names, providing rich metadata to support accurate AI model development across diverse species and ecosystems. We demonstrate the value of BioTrove by releasing a suite of CLIP models trained using a subset of 40 million captioned images, known as BioTrove-Train. This subset focuses on seven categories within the dataset that are underrepresented in standard image recognition models, selected for their critical role in biodiversity and agriculture: Aves ("birds"), Arachnida ("spiders/ticks/mites"), Insecta ("insects"), Plantae ("plants"), Fungi ("fungi"), Mollusca ("snails"), and Reptilia ("snakes/lizards"). To support rigorous assessment, we introduce several new benchmarks and report model accuracy for zero-shot learning across life stages, rare species, confounding species, and multiple taxonomic levels. We anticipate that BioTrove will spur the development of AI models capable of supporting digital tools for pest control, crop monitoring, biodiversity assessment, and environmental conservation. These advancements are crucial for ensuring food security, preserving ecosystems, and mitigating the impacts of climate change. BioTrove is publicly available, easily accessible, and ready for immediate use.

cs.CV

Deep learning powered real-time identification of insects using citizen science data

Insect-pests significantly impact global agricultural productivity and quality. Effective management involves identifying the full insect community, including beneficial insects and harmful pests, to develop and implement integrated pest management strategies. Automated identification of insects under real-world conditions presents several challenges, including differentiating similar-looking species, intra-species dissimilarity and inter-species similarity, several life cycle stages, camouflage, diverse imaging conditions, and variability in insect orientation. A deep-learning model, InsectNet, is proposed to address these challenges. InsectNet is endowed with five key features: (a) utilization of a large dataset of insect images collected through citizen science; (b) label-free self-supervised learning for large models; (c) improving prediction accuracy for species with a small sample size; (d) enhancing model trustworthiness; and (e) democratizing access through streamlined MLOps. This approach allows accurate identification (>96% accuracy) of over 2500 insect species, including pollinator (e.g., butterflies, bees), parasitoid (e.g., some wasps and flies), predator species (e.g., lady beetles, mantises, dragonflies) and harmful pest species (e.g., armyworms, cutworms, grasshoppers, stink bugs). InsectNet can identify invasive species, provide fine-grained insect species identification, and work effectively in challenging backgrounds. It also can abstain from making predictions when uncertain, facilitating seamless human intervention and making it a practical and trustworthy tool. InsectNet can guide citizen science data collection, especially for invasive species where early detection is crucial. Similar approaches may transform other agricultural challenges like disease detection and underscore the importance of data collection, particularly through citizen science efforts..

cs.CV

Linking Extragalactic Transients and their Host Galaxy Properties: Transient Sample, Multi-Wavelength Host Identification, and Database Construction

Understanding the preferences of transient types for host galaxies with certain characteristics is key to studies of transient physics and galaxy evolution, as well as to transient identification and classification in the LSST era. Here we describe a value-added database of extragalactic transients--supernovae, tidal disruption events, gamma-ray bursts, and other rare events--and their host galaxy properties. Based on reported coordinates, redshifts, and host galaxies (if known) of events, we cross-identify their host galaxies or most likely host candidates in various value-added or survey catalogs, and compile the existing photometric, spectroscopic, and derived physical properties of host galaxies in these catalogs. This new database covers photometric measurements from the far-ultraviolet to mid-infrared. Spectroscopic measurements and derived physical properties are also available for a smaller subset of hosts. For our 36333 unique events, we have cross-identified 13753 host galaxies using host names, plus 4480 using host coordinates. Besides those with known hosts, there are 18100 transients with newly identified host candidates. This large database will allow explorations of the connections of transients to their hosts, including a path toward transient alert filtering and probabilistic classification based on host properties.

astro-ph.GA

An ALMA and MagAO Study of the Substellar Companion GQ Lup B

Multi-wavelength observations provide a complementary view of the formation of young directly-imaged planet-mass companions. We report the ALMA 1.3 mm and Magellan adaptive optics (MagAO) H-alpha, i', z', and Ys observations of the GQ Lup system, a classical T Tauri star with a 10-40 Mjup substellar companion at ~110 AU projected separation. We estimate the accretion rates for both components from the observed H-alpha fluxes. In our 0.05 arcsec resolution ALMA map, we resolve GQ Lup A's disk in dust continuum, but no signal is found from the companion. The disk is compact, with a radius of ~22 AU, a dust mass of ~6 Earth masses, an inclination angle of ~56 deg, and a very flat surface density profile indicative of a radial variation in dust grain sizes. No gaps or inner cavity are found in the disk, so there is unlikely a massive inner companion to scatter GQ Lup B outward. Thus, GQ Lup B might have formed in situ via disk fragmentation or prestellar core collapse. We also show that GQ Lup A's disk is misaligned with its spin axis, and possibly with GQ Lup B's orbit. Our analysis on the tidal truncation radius of GQ Lup A's disk suggests that GQ Lup B's orbit might have a low eccentricity.

astro-ph.SR