arXiv subjects

Nisha Gupta

Publications and source records attributed to Nisha Gupta.

4 recordsLinked to original sources

arXiv2025

Constructing Micro Knowledge Graphs from Technical Support Documents

Short technical support pages such as IBM Technotes are quite common in technical support domain. These pages can be very useful as the knowledge sources for technical support applications such as chatbots, search engines and question-answering (QA) systems. Information extracted from documents to drive technical support applications is often stored in the form of Knowledge Graph (KG). Building KGs from a large corpus of documents poses a challenge of granularity because a large number of entities and actions are present in each page. The KG becomes virtually unusable if all entities and actions from these pages are stored in the KG. Therefore, only key entities and actions from each page are extracted and stored in the KG. This approach however leads to loss of knowledge represented by entities and actions left out of the KG as they are no longer available to graph search and reasoning functions. We propose a set of techniques to create micro knowledge graph (micrograph) for each of such web pages. The micrograph stores all the entities and actions in a page and also takes advantage of the structure of the page to represent exactly in which part of that page these entities and actions appeared, and also how they relate to each other. These micrographs can be used as additional knowledge sources by technical support applications. We define schemas for representing semi-structured and plain text knowledge present in the technical support web pages. Solutions in technical support domain include procedures made of steps. We also propose a technique to extract procedures from these webpages and the schemas to represent them in the micrographs. We also discuss how technical support applications can take advantage of the micrographs.

cs.IR↗

arXiv2020

Semiflexible polymer in a gliding assay: reentrant transition, role of turnover and activity

We consider a model of an extensible semiflexible filament moving in two dimensions on a motility assay of motor proteins represented explicitly as active harmonic linkers. Their heads bind stochastically to polymer segments within a capture radius, and extend along the filament in a directed fashion before detaching. Both the extension and detachment rates are load-dependent and generate an active drive on the filament. The filament undergoes a first order phase transition from open chain to spiral conformations and shows a reentrant behavior in both the active extension and the turnover, defined as the ratio of attachment-detachment rates. Associated with the phase transition, the size and shape of the polymer changes non-monotonically, and the relevant autocorrelation functions display double-exponential decay. The corresponding correlation times show a maximum signifying the dominance of spirals. The orientational dynamics captures the rotation of spirals, and its correlation time decays with activity as a power law.

physics.bio-ph↗

arXiv2019

Dynein catch bond as a mediator of codependent bidirectional cellular transport

Intracellular bidirectional transport of cargo on microtubule filaments is achieved by the collective action of oppositely directed dynein and kinesin motors. Experiments have found that in certain cases, inhibiting the activity of one type of motor results in an overall decline in the motility of the cellular cargo in both directions. This counter-intuitive observation, referred to as {\em paradox of codependence} is inconsistent with the existing paradigm of a mechanistic tug-of-war between oppositely directed motors. Unlike kinesin, dynein motors exhibit catchbonding, wherein the unbinding rates of these motors decrease with increasing force on them. Incorporating this catchbonding behavior of dynein in a theoretical model, we show that the functional divergence of the two motors species manifests itself as an internal regulatory mechanism, and leads to codependent transport behaviour in biologically relevant regimes. Using analytical methods and stochastic simulations, we analyse the processivity characteristics and probability distribution of run times and pause times of transported cellular cargoes. We show that catchbonding can drastically alter the transport characteristics and also provide a plausible resolution of the paradox of codependence.

physics.bio-ph↗

arXiv2019

Morphological and dynamical properties of semiflexible filaments driven by molecular motors

We consider an explicit model of a semiflexible filament moving in two dimensions on a gliding assay of motor proteins, which attach to and detach from filament segments stochastically, with a detachment rate that depends on the local load experienced. Attached motor proteins move along the filament to one of its ends with a velocity that varies non-linearly with the motor protein extension. The resultant force on the filament drives it out of equilibrium. The distance from equilibrium is reflected in the end-to-end distribution, modified bending stiffness, and a transition to spiral morphology of the polymer. The local stress dependence of activity results in correlated fluctuations in the speed and direction of the center of mass leading to a series of ballistic-diffusive crossovers in its dynamics.

cond-mat.soft↗