arXiv subjects

Noriyoshi Arai

Publications and source records attributed to Noriyoshi Arai.

12 recordsLinked to original sources

arXiv2025

Enhanced premelting at the ice-rubber interface using all-atom molecular dynamics simulation

The ice-rubber interface is critical in applications such as tires and shoe outsoles, yet its molecular tribology remains unclear. Using all-atom molecular dynamics simulations, we studied premelting layers at the basal face of ice in contact with styrene-butadiene rubber from 254 to 269 K. Despite its hydrophobicity, rubber enhances structural disorder of interfacial water, promoting premelting. In contrast, water mobility is suppressed by confinement from polymer chains, leading to glassy dynamics distinct from the ice-vapor interface. Near the melting point, rubber chains become more flexible and penetrate the premelting layer, forming a mixed rubber-water region that couples the dynamics of both components. These results suggest that nanoscale roughness and morphology of hydrophobic polymers disrupt ice hydrogen-bond networks, thereby enhancing premelting. Our findings provide molecular-level insight into ice slipperiness and inform the design of polymer materials with controlled ice adhesion and friction.

cond-mat.soft↗

arXiv2025

Composition-agnostic prediction of self-assembly in multicomponent amphiphile mixtures from molecular structure

Predicting self-assembly in multi-component amphiphilic systems is challenging due to the complexity of intercomponent interactions and the combinatorial growth of possible formulations. In this study, we develop a unified machine-learning framework that directly predicts self-assembly behavior from the molecular structures of constituent components, independent of the number or identity of those components. We extend the critical packing parameter (CPP) to multi-component systems and generate a large dataset of self-assembled morphologies using dissipative particle dynamics (DPD) simulations. By systematically evaluating twelve combinations of feature extraction methods and model architectures, we find that models incorporating a fully connected graph convolutional network (GCN) layer achieve superior performance, with the GCN-GCN architecture accurately capturing both intramolecular relationships and intercomponent interactions. Notably, this model exhibits strong extrapolative capability: it accurately predicts CPP values for five-component mixtures even when trained only on systems with fewer components, and it maintains high accuracy for mixtures composed of molecular species that are entirely absent from the training data. These results demonstrate that a composition-agnostic predictive framework can enable efficient virtual screening and provide a foundation for the rational design of complex amphiphilic materials.

cond-mat.soft↗

arXiv2025

Molecular Dynamics Investigation of Static and Dynamic Interfacial Properties in Ice-Polymer Premelting Layers

Premelting at the ice-polymer interfaces, in which a quasi-liquid layer (QLL) forms below the melting point, is strongly influenced by polymer surface chemistry; however, the molecular-scale mechanisms underlying these effects remain poorly understood. This study employs large-scale molecular dynamics simulations combined with machine learning-assisted analysis to elucidate how polymer type (hydrophilic vs hydrophobic) modulates interfacial premelting. Our simulations reveal that hydrophilic and hydrophobic polymer surfaces have distinct effects on the QLL thickness, interfacial water structure, and diffusivity. Specifically, a hydrophilic polymer interface promotes a thicker QLL with more ordered interfacial water and lower diffusivity, whereas a hydrophobic interface induces a thinner QLL with a less ordered interfacial water structure and higher diffusivity. These results advance the understanding of polymer-mediated interfacial melting phenomena and offer guidance for designing anti-icing and low-friction materials.

cond-mat.soft↗

arXiv2024

Novel stabilization mechanisms for concentrated emulsions with tunable morphology via amphiphilic polymer-grafted nanoparticles

This study explores the stabilization mechanisms of concentrated emulsions with tunable morphology using amphiphilic polymer-grafted nanoparticles (PGNPs). We employ coarse-grained molecular simulations to investigate concentrated oil-in-water emulsions stabilized by partially hydrolyzed poly(vinyl alcohol)-grafted poly(methyl methacrylate) (PMMA) particles. Two grafting architectures were examined: hydrophilic-hydrophobic (AB-type) diblock PGNPs and reverse BA-type diblock PGNPs. Our findings reveal that AB-type diblock PGNPs tend to aggregate, leading to droplet-droplet coalescence. In contrast, BA-type diblock PGNPs disperse effectively in the water phase, stabilizing robust emulsion through a space-filling mechanism. The study further demonstrates that the stability and morphology of the emulsions can be tuned by varying the number of PGNPs. Our results suggest that BA-type diblock PGNPs are more effective in stabilizing concentrated emulsions, offering insights for the design of novel emulsifiers in industrial applications.

cond-mat.soft↗

arXiv2024

Investigating the Molecular Design Mechanism Behind the Hydrophobicity of Biological Surface Nanostructures: Insights from Butterfly and Mosquito Systems

Wettability is a fundamental physicochemical property of solid surfaces, with unique wettability patterns playing pivotal roles across diverse domains. Inspired by nature's ingenious designs, bio-inspired materials have emerged as a frontier of scientific inquiry. They showcase remarkable hydrophobic properties observed in phenomena such as mosquitoes preventing fog condensation, and lotus leaves exhibiting self-cleaning attributes. This groundbreaking research delves into the hydrophobic characteristics of biomimetic surfaces using coarse-grained molecular simulation and the free energy barrier evaluation system. By analyzing the butterfly wings and mosquito eyes model, we aim to pioneer a comprehensive framework that factors in the influence of surface parameters on the free energy barrier. Through meticulous simulation and analysis, we strive to validate and enhance the reliability of the free energy barrier assessment method, deepening our understanding of hydrophobicity across diverse biomaterials and paving the way for optimizing their properties for a myriad of applications. During our investigation, we shed light on the elusive intermediate state, a departure from the typical Cassie or Wenzel state, enriching our theoretical framework for surfaces with distinctive properties. This research is a catalyst for developing biomimetic materials with superior hydrophobic characteristics and innovative fabrication processes, transcending academic boundaries and promising significant strides in environmental conservation, medicine, and beyond, offering hope for a greener, healthier, and more sustainable future.

physics.bio-ph↗

arXiv2024

Machine learning-enabled exploration of mesoscale architectures in amphiphilic-molecule self-assembly

Amphiphilic molecules spontaneously form self-assembled structures of various shapes depending on their molecular structures, the temperature, and other physical conditions. The functionalities of these structures are dictated by their formations and their properties must be evaluated for reproduction using molecular simulations. However, the assessment of such intricate structures involves many procedural steps. This study investigates the potential of machine-learning models to extract structural features from mesoscale non-ordered self-assembled structures, and suggests a methodology in which machine-learning models for the structural analysis of self-assembled structures are trained on particle types and coordinate data. In the proposed approach, graph neural networks are utilised to extract local structural data for analysis. In simulations using several hundred self-assembled structures of up to 4050 coarse-grained particles, local structures are successfully extracted and classified with up to 78.35 % accuracy. As the machine-learning models learn structural characteristics without the need for human-made feature engineering, the proposed method has important potential applications in the field of materials science.

cond-mat.soft↗

arXiv2023

Machine learning prediction of self-assembly and analysis of molecular structure dependence on the critical packing parameter

Amphiphilic molecules spontaneously form self-assembly structures based on physical conditions such as molecular structure, concentration, and temperature. These structures exhibit various useful functions according to their morphology. The concept of the critical packing parameter serves to correlate self-organized structures with chemical composition. However, unless both molecular arrangement and self-assembly patterns are understood, direct computational utilization for molecular design remains challenging. In this study, we attempt to predict the self-assembled structure of a molecule directly from its chemical structure and analyze factors influencing it using machine learning. Dissipative particle dynamics simulations were used to reproduce many self-assembly structures composed of various chemical structures, and their critical packing parameters were calculated. A machine learning model was built using the chemical structures as input data and the critical packing parameters as output data.As a result, both Random Forest and a type of Recurrent Neural Network known as GRU demonstrated high predictive accuracy. It has been revealed through feature importance analysis and dependence on sample size that the amphiphilic nature of molecules significantly influences the self-assembly structures. Additionally, the importance of selecting an appropriate molecular structure representation for each algorithm has been emphasized. The results of this research will help to further streamline product development in the fields of materials science, materials chemistry, and medical materials.

cond-mat.mtrl-sci↗

arXiv2023

Structure Formation of Amphiphilic Nanocubes at Rest and Under Shear

We investigate the self-assembly of amphiphilic nanocubes under rest and shear using molecular dynamics (MD) simulations and kinetic Monte Carlo (KMC) calculations. These particles combine both interaction and shape anisotropy, making them valuable models for studying folded proteins and DNA-functionalized nanoparticles. The nanocubes can self-assemble into various finite-sized aggregates ranging from rods to self-avoiding random walks, depending on the number and placement of the hydrophobic faces. Our study focuses on suspensions containing multi- and one-patch cubes, with their ratio systematically varied. When the binding energy is comparable to the thermal energy, the aggregates consist of only few cubes that spontaneously associate/dissociate. However, highly stable aggregates emerge when the binding energy exceeds the thermal energy. Generally, the mean aggregation number of the self-assembled clusters increases with the number of hydrophobic faces and decreases with the fraction of one-patch cubes. In sheared suspensions, the more frequent collisions between nanocube clusters lead to faster aggregation dynamics but also to smaller terminal steady-state mean cluster sizes. The MD and KMC simulations are in excellent agreement, and the analysis of the rate kernels enables the identification of the primary mechanisms responsible for the (shear-induced) cluster growth and breakup.

cond-mat.soft↗

arXiv2022

Wetting hysteresis induces effective unidirectional water transport through a fluctuating nanochannel

We propose a water pump that actively transports water molecules through nanochannels. Spatially asymmetric thermal fluctuations imposed on the channel radius cause unidirectional water flow without osmotic pressure, which can be attributed to hysteresis in the cyclic transition between the wetting/drying states. We show that the water transport depends on fluctuations, such as white, Brownian, and pink noises. Because of the high-frequency components in white noise, fast switching of open and close states inhibits channel wetting. Conversely, pink and Brownian noises generate high-pass filtered net flow. Brownian fluctuation leads to a faster water transport rate, whereas pink noise has a higher capability to overcome osmotic pressure in the opposite direction. A trade-off relationship exists between the resonant frequency of the fluctuation and the flow amplification. The proposed pump can be considered as an analogy for the reversed Carnot cycle, which is the upper limit on the energy conversion efficiency.

cond-mat.soft↗

arXiv2022

A stochastic Hamiltonian formulation applied to dissipative particle dynamics

In this paper, a stochastic Hamiltonian formulation (SHF) is proposed and applied to dissipative particle dynamics (DPD) simulations. As an extension of Hamiltonian dynamics to stochastic dissipative systems, the SHF provides necessary foundations and great convenience for constructing efficient numerical integrators. As a first attempt, we develop the Störmer--Verlet type of schemes based on the SHF, which are structure-preserving for deterministic Hamiltonian systems without external forces, the dissipative forces in DPD. Long-time behaviour of the schemes is shown numerically by studying the damped Kubo oscillator. In particular, the proposed schemes include the conventional Groot-Warren's modified velocity-Verlet method and a modified version of Gibson-Chen-Chynoweth as special cases. The schemes are applied to DPD simulations and analysed numerically.

math.NA↗

arXiv2022

Prediction of transport property via machine learning molecular movements

Molecular dynamics (MD) simulations are increasingly being combined with machine learning (ML) to predict material properties. The molecular configurations obtained from MD are represented by multiple features, such as thermodynamic properties, and are used as the ML input. However, to accurately find the input--output patterns, ML requires a sufficiently sized dataset that depends on the complexity of the ML model. Generating such a large dataset from MD simulations is not ideal because of their high computation cost. In this study, we present a simple supervised ML method to predict the transport properties of materials. To simplify the model, an unsupervised ML method obtains an efficient representation of molecular movements. This method was applied to predict the viscosity of lubricant molecules in confinement with shear flow. Furthermore, simplicity facilitates the interpretation of the model to understand the molecular mechanics of viscosity. We revealed two types of molecular mechanisms that contribute to low viscosity.

physics.chem-ph↗

arXiv2022

Correlation between ordering and shear thinning in confined liquids

Despite the extensive research that has been conducted for decades on the behavior of confined liquids, detailed knowledge of this phenomenon, particularly in the mixed/boundary lubrication regime, remains limited. This can be attributed to several factors including the difficulty of direct experimental observations of the behavior of lubricant molecules under non-equilibrium conditions, the high computational cost of molecular simulations to reach steady state, and the low signal-to-noise ratio at extremely low shear rates corresponding to actual operating conditions. To this end, we studied the correlation between the structure formation and shear viscosity of octamethylcyclotetrasiloxane confined between two mica surfaces in a mixed/boundary lubrication regime. Three different surface separations corresponding to two-, three-, and five-layered structures were considered to analyze the effect of confinement. The orientational distributions with one specific peak for $n=2$ and two distributions, including a parallel orientation with the surface normal for $n>2$, were observed at rest. The confined liquids exhibited a distinct shear-thinning behavior independent of surface separations for a relatively low sliding velocity, $V_{\rm x}\lesssim 10^{-1}\,{\rm m/s}$. However, the shear viscosities at $V_{\rm x}\lesssim 10^{-1}\,{\rm m/s}$ depended on the number of layered structures. Newtonian behavior was observed with a further increase in the sliding velocity. Furthermore, we found a strong correlation between the degree of molecular orientation and the shear viscosity of the confined liquids. The magnitude of the shear viscosity of the confined liquids can primarily be determined by the degree of molecular orientation, and shear-thinning originates from the vanishing of specific orientational distributions with increasing sliding velocity.

cond-mat.soft↗