arXiv subjects

O. Jonathan Fajen

Publications and source records attributed to O. Jonathan Fajen.

10 recordsLinked to original sources

arXiv2026

Latent unified smooth Hamiltonians for excited state chemistry

We describe a neural network architecture and training procedure designed to model electronic ground and excited states of arbitrary molecular systems. By indirectly learning a latent, implicit basis representation of the electronic-state Hamiltonian, the model offers a unified treatment of multiple electronic states, conical intersections, and non-adiabatic couplings. The formalism can be further extended to learn consistent latent representations of additional operators such as transition dipole moments, for example. To demonstrate the general capabilities of our architecture, we train and evaluate networks on two realistic photochemical systems, thymine and azobenzene. The resulting models accurately reproduce energies and oscillator strengths for the ground- and low-lying excited states relevant to the photochemistry of these systems. We highlight the performance of the trained networks by studying critical molecular geometries, including conical intersections and excited state minima. By construction, the proposed framework also recovers the emergence of Berry phase accumulation around conical intersections. By pairing key mathematical structure from quantum chemistry with the representation learning power of transformers, the presented architecture offers a qualitatively new path toward fast and accurate ground- and excited-state simulations.

physics.chem-ph↗

arXiv2026

Spectroscopic photorelaxation signatures in pyrazine from nonadiabatic dynamics simulations with coupled cluster theory

Despite extensive theoretical and experimental efforts, the mechanisms underlying the ultrafast relaxation of pyrazine after photoexcitation remain challenging to disentangle. Recently, theoretical investigations have been converging towards a three-state mechanism, with an ultrafast decay of the bright ${}^{1}B_{2u}$ state followed by beats in the populations of the low-lying ${}^{1}B_{3u}$ and ${}^{1}A_u$ states. However, a clear agreement between the experimental results and the corresponding theoretical predictions remains elusive. Here, we present a high-level simulation of the ultrafast excited states dynamics of pyrazine using coupled cluster theory with single and double excitations and ab initio multiple spawning, together with predictions of the time-resolved photoelectron spectrum and X-ray absorption spectra at the nitrogen and carbon edges. This is made possible by using a newly developed multistate implementation of similarity constrained coupled cluster theory. We find quantitative agreement with the experimental signature of the ${}^{1}B_{2u}$ decay in the photoelectron spectrum, and qualitative agreement with the available experimental X-ray absorption spectra. Moreover, we detail spectroscopic signatures that should be verifiable in experiments with sufficient resolution in the time and frequency domains. Compared to previous theoretical studies, we provide further detailed insight into the interplay of the states involved in the photorelaxation.

physics.chem-ph↗

arXiv2026

Perspective on a challenge: predicting the photochemistry of cyclobutanone

This Perspective is part of a Special Topic that explored the maturity of nonadiabatic molecular dynamics for predicting photochemical processes. In 2023, a prediction challenge was issued to the community of computational photochemists to simulate the photochemistry of cyclobutanone, photoexcited at 200 nm, and the resulting time-resolved MeV-UED signal. The challenge attracted 15 theoretical predictions from more than 70 researchers, employing a wide range of strategies for electronic structure and nonadiabatic molecular dynamics to predict the time-resolved MeV-UED signal before the experiment had been conducted at SLAC (Stanford, USA). The MeV-UED instrument at Shanghai Jiao Tong University was also used to provide a second independent time-resolved MeV-UED signal for the photochemistry of cyclobutanone. This Perspective discusses the various approaches and strategies used by the participants to predict the photochemistry of cyclobutanone. This work also summarizes the strengths and weaknesses of various methods used for photoexcitation, electronic structure, nonadiabatic dynamics, and calculation of observables, as agreed by the participants during a CECAM workshop dedicated to the results of the challenge and organized in Lausanne in April 2025. This Perspective also collects all the predicted time-resolved MeV-UED signals into a single figure, together with the experimental signal. This challenge (i) demonstrated the qualitative predictive power of nonadiabatic molecular dynamics and (ii) underscore the impact of electronic-structure theory on the outcome of the excited-state dynamics and the need for its careful benchmarking. This effort allowed the community to share practical strategies to perform nonadiabatic dynamics (discussed in the present Perspective) and constitutes a 'calibration' exercise for computational photochemistry.

physics.chem-ph↗

arXiv2025

Accelerating CCSD(T) on Graphical Processing Units (GPUs)

Coupled cluster with singles, doubles and perturbative triples (CCSD(T)) often provides ground state correlation energies within "chemical accuracy," but suffers from high computational cost and steep scaling with system size. We present a GPU-accelerated implementation of CCSD(T) in the TeraChem software package. The new implementation achieves state-of-the-art performance, enabling the calculation of the (T) correction for a system with 63 atoms and more than 1000 basis functions in a little under 8 hours on a single node. Additionally, we demonstrate the utility of our optimized implementation for the rapid calculation of full CCSD(T)/CBS stacking energies for all ten unique DNA base pair stacked tetramers. We expect that the TeraChem CCSD(T) implementation will enable the rapid calculation of high-level data that was not previously accessible in a reasonable timeframe.

physics.chem-ph↗

arXiv2025

Shadow excited state molecular dynamics with the \DeltaSCF method

We present an extension of the shadow extended Lagrangian Born-Oppenheimer molecular dynamics (XL-BOMD) method to excited state molecular dynamics (ESMD) in the context of \DeltaSCF Kohn-Sham density functional theory, with demonstrations performed using self-consistent charge density functional tight binding (SCC-DFTB) theory. In this shadow ESMD approach, the approximate iterative solution to the exact potential in conventional ESMD is replaced by an exact single-step solution to an approximate shadow excited-state potential. We show that in addition to offering significant improvement in computational cost relative to direct ESMD, our shadow ESMD method provides enhanced stability and robustness relative to its 'exact' counterpart. Our implementation is carried out in the context of SCC-DFTB theory but should be broadly generalizable, both to {\textit{ab initio}} electronic structure methods and to other semi-empirical quantum chemistry approaches.

physics.chem-ph↗

arXiv2024

Extending GPU-Accelerated Gaussian Integrals in the TeraChem Software Package to f Type Orbitals: Implementation and Applications

The increasing availability of GPUs for scientific computing has prompted interest in accelerating quantum chemical calculations through their use. The complexity of integral kernels for high angular momentum basis functions however often limits the utility of GPU implementations with large basis sets or for metal containing systems. In this work, we report implementation of $f$ function support in the GPU-accelerated TeraChem software package through the development of efficient kernels for the evaluation of Hamiltonian integrals. The high efficiency of the resulting code is demonstrated through density functional theory (DFT) calculations on increasingly large organic molecules and transition metal complexes, as well as coupled cluster singles and doubles (CCSD) calculations on water clusters. Preliminary investigations into Ni(I) catalysis with DFT and the photochemistry of MnH(CH$_3$) with complete active space self-consistent field (CASSCF) are also carried out. Overall, our GPU-accelerated software appears to be well-suited for fast simulation of large transition metal containing systems, as well as organic molecules.

physics.chem-ph↗

arXiv2024

Unexpected hydrogen dissociation in thymine: predictions from a novel coupled cluster theory

The fate of thymine upon excitation by ultraviolet radiation has been the subject of intense debate over the past three decades. Today, it is widely believed that its ultrafast excited state decay stems from a radiationless transition from the bright $ππ^*$ state to a dark $nπ^*$ state. However, conflicting theoretical predictions have made the experimental data difficult to interpret. Here we simulate the ultrafast dynamics in thymine at the highest level of theory to date, performing wavepacket dynamics with a new coupled cluster method. Our simulation confirms an ultrafast $ππ^*$ to $nπ^*$ transition ($τ = 41 \pm 14$ fs). Furthermore, the predicted oxygen-edge X-ray absorption spectra agree quantitatively with the experimental results. Our simulation also predicts an as-yet uncharacterized photochemical pathway: a $πσ^*$ channel that leads to hydrogen dissociation at one of the two N-H bonds in thymine. Similar behavior has been identified in other heteroaromatic compounds, including adenine, and several authors have speculated that a similar pathway may exist in thymine. However, this was never confirmed theoretically or experimentally. This prediction calls for renewed efforts to experimentally identify or exclude the presence of this channel.

physics.chem-ph↗

arXiv2024

Prediction of Photodynamics of 200 nm Excited Cyclobutanone with Linear Response Electronic Structure and Ab Initio Multiple Spawning

Simulations of photochemical reaction dynamics have been a challenge to the theoretical chemistry community for some time. In an effort to determine the predictive character of current approaches, we predict the results of an upcoming ultrafast diffraction experiment on the photodynamics of cyclobutanone after excitation to the lowest lying Rydberg state (S$_2$). A picosecond of nonadiabatic dynamics is described with ab initio multiple spawning. We use both time dependent density functional theory and equation-of-motion coupled cluster for the underlying electronic structure theory. We find that the lifetime of the S$_2$ state is more than a picosecond (with both TDDFT and EOM-CCSD). The predicted UED spectrum exhibits numerous structural features, but weak time dependence over the course of the simulations.

physics.chem-ph↗

arXiv2021

Multicomponent MP4 and the Inclusion of Triple Excitations in Multicomponent Many-Body Methods

This study implements the full multicomponent third-order (MP3) and fourth-order (MP4) many-body perturbation theory methods for the first time. Previous multicomponent studies have only implemented a subset of the full contributions and the present implementation is the first multicomponent many-body method to include any connected triples contribution to the electron-proton correlation energy. The multicomponent MP3 method is shown to be comparable in accuracy to the multicomponent coupled-cluster doubles method for the calculation of proton affinities, while the multicomponent MP4 method is of similar accuracy as the multicomponent coupled-cluster singles and doubles (CCSD) method. From the results in this study, it is hypothesized that the relative accuracy of multicomponent methods is more similar to their single-component counterparts than previously assumed and that the previous explanation for the better performance of multicomponent CCSD compared to other ab initio multicomponent methods may be incorrect. It is demonstrated that for multicomponent MP4, the fourth-order triple-excitation contributions can be split into electron-electron and electron-proton contributions and the electron-electron contributions ignored with very little loss of accuracy of protonic properties.

physics.chem-ph↗

arXiv2020

Multicomponent CASSCF Revisited: Large Active Spaces are Needed for Qualitatively Accurate Protonic Densities

Multicomponent methods seek to treat select nuclei, typically protons, fully quantum mechanically and equivalent to the electrons of a chemical system. In such methods, it is well known that due to the neglect of electron-proton correlation, a Hartree-Fock (HF) description of the electron-proton interaction catastrophically fails leading to qualitatively incorrect protonic properties. In single-component quantum chemistry, the qualitative failure of HF is normally indicative of the need for multireference methods such as complete active space self-consistent field (CASSCF). While a multicomponent CASSCF method was implemented nearly twenty years ago, it is only able to perform calculations with very small active spaces (~105 multicomponent configurations). Therefore, in order to extend the realm of applicability of the multicomponent CASSCF method, this study derives and implements a new two-step multicomponent CASSCF method that uses multicomponent heat-bath configuration interaction for the configuration interaction step, enabling calculations with very large active spaces (up to 16 electrons in 48 orbitals). We find that large electronic active spaces are needed to obtain qualitatively accurate protonic densities for the HCN and FHF- molecules. Additionally, the multicomponent CASSCF method implemented here should have further applications for double-well protonic potentials and systems that are inherently electronically multireference.

physics.chem-ph↗