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Oleksandra Gulenko

Publications and source records attributed to Oleksandra Gulenko.

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ULMShare: A Large-Scale In Vivo Ultrasound Localization Microscopy Dataset for Microvascular Imaging

Ultrasound Localization Microscopy (ULM) enables microscopic imaging of the cerebral microvasculature in vivo, but relies on a multi-stage processing pipeline in which acquisition settings and reconstruction processes strongly influence the final output. Existing public datasets remain sparse, restricting rigorous evaluation and slowing progress in algorithm development, including emerging machine-learning approaches, which by design require large quantities of data to be robust and reliable. We introduce \textbf{ULMShare}, an open-access dataset of 99 whole-brain transcranial ULM acquisitions from 61 healthy mice (36 females, 22 males, 3 unknown; mean age: $8.2 \pm 5.5$ weeks; mean weight: $17.7 \pm 4.2$ g), for a total of 30TB of raw data. The dataset spans three experimental procedures, multiple injection and anesthesia protocols, two ultrasound probes, and different imaging planes and orientations. Each acquisition includes raw ultrasonic data, detailed metadata, an illustrative reconstruction and the corresponding microbubble trajectories. Alongside the data, we report vascular saturation, Fourier Ring Correlation, and track-length statistics, plus expert visual gradings. ULMShare provides a broad, standardized and publicly available resource for method development, validation, and benchmarking. The full dataset is available on the Federated Research Data Repository and additional resources are hosted on the ULMShare Github repository.

physics.med-ph

Intra-instrument channel workable, optical- resolution photoacoustic and ultrasonic mini-probe system for clinical gastrointestinal endoscopy

There has been a longstanding expectation that the optical resolution embodiment of photoacoustic tomography could have a substantial impact on gastrointestinal endoscopy by enabling microscopic visualization of the vasculature based on the endogenous contrast mechanism. Although multiple studies have demonstrated the in vivo imaging capability of a developed imaging device over the last decade, the implementation of such an endoscopic system that can be applied immediately when necessary via the instrument channel of a video endoscope has been a challenge. In this study, we developed a 3.38 mm diameter catheter based, integrated optical resolution photoacoustic and ultrasonic miniprobe system and successfully demonstrated its intrainstrument channel workability for the standard 3.7 mm diameter instrument channel of a clinical video endoscope based on a swine model. Through the instrument channel, we acquired the first in vivo photoacoustic and ultrasonic dual mode endoscopic images from the esophagogastric junction, which is one of the most frequently cited anatomical sites in the gastrointestinal tract in relation to Barretts esophagus. Moreover, from a rat colorectum in vivo imaging experiment, we visualized hierarchically developed mesh like capillary networks with a hole size as small as 50 microns, which suggests the potential level of image details that could be photoacoustically provided in clinical settings in the future.

physics.med-ph