arXiv subjects

Oliver Cossairt

Publications and source records attributed to Oliver Cossairt.

At least 37 records · Page 2Linked to original sources

arXiv2022

Adaptive Illumination based Depth Sensing using Deep Superpixel and Soft Sampling Approximation

Dense depth map capture is challenging in existing active sparse illumination based depth acquisition techniques, such as LiDAR. Various techniques have been proposed to estimate a dense depth map based on fusion of the sparse depth map measurement with the RGB image. Recent advances in hardware enable adaptive depth measurements resulting in further improvement of the dense depth map estimation. In this paper, we study the topic of estimating dense depth from depth sampling. The adaptive sparse depth sampling network is jointly trained with a fusion network of an RGB image and sparse depth, to generate optimal adaptive sampling masks. We show that such adaptive sampling masks can generalize well to many RGB and sparse depth fusion algorithms under a variety of sampling rates (as low as $0.0625\%$). The proposed adaptive sampling method is fully differentiable and flexible to be trained end-to-end with upstream perception algorithms.

cs.CV↗

arXiv2022

Investigating the Potential of Auxiliary-Classifier GANs for Image Classification in Low Data Regimes

Generative Adversarial Networks (GANs) have shown promise in augmenting datasets and boosting convolutional neural networks' (CNN) performance on image classification tasks. But they introduce more hyperparameters to tune as well as the need for additional time and computational power to train supplementary to the CNN. In this work, we examine the potential for Auxiliary-Classifier GANs (AC-GANs) as a 'one-stop-shop' architecture for image classification, particularly in low data regimes. Additionally, we explore modifications to the typical AC-GAN framework, changing the generator's latent space sampling scheme and employing a Wasserstein loss with gradient penalty to stabilize the simultaneous training of image synthesis and classification. Through experiments on images of varying resolutions and complexity, we demonstrate that AC-GANs show promise in image classification, achieving competitive performance with standard CNNs. These methods can be employed as an 'all-in-one' framework with particular utility in the absence of large amounts of training data.

cs.CV↗

arXiv2021

Anatomy of a superorganism -- structure and growth dynamics of army ant bivouacs

Beyond unicellular and multicellular organisms, there is a third type of structural complexity in living animals: that of the mechanical self-assembly of groups of distinct multicellular organisms into dynamical, functional structures. One of the most striking examples of such structures is the army ant bivouac, a nest which self-assembles solely from the interconnected bodies of hundreds of thousands of individuals. These bivouacs are difficult to study because they rapidly disassemble when disturbed, and hence little is known about the structure and rules that individuals follow during their formation. Here we use a custom-built Computed Tomography scanner to investigate the details of the internal structure and growth process of army ant bivouacs. We show that bivouacs are heterogeneous structures, which throughout their growth maintain a thick shell surrounding a less dense interior that contains empty spaces akin to nest chambers. We find that ants within the bivouac do not carry more than approximately eight times their weight regardless of the size of the structure or their position within it. This observation suggests that bivouac size is not limited by physical constraints of the ants' morphology. This study brings us closer to understanding the rules used by individuals to govern the formation of these exceptional superorganismal structures, and provides insight into how to create engineered self-assembling systems with, for instance, swarms of robots or active matter.

q-bio.QM↗

arXiv2021

Characterizing the Immaterial. Noninvasive Imaging and Analysis of Stephen Benton's Hologram Engine no. 9

Invented in 1962, holography is a unique merging of art and technology. It persisted at the scientific cutting edge through the 1990s, when digital imaging emerged and supplanted film. Today, holography is experiencing new interest as analog holograms enter major museum collections as bona fide works of art. In this essay, we articulate our initial steps at Northwestern's Center for Scientific Studies in the Arts to describe the technological challenges on the conservation of holograms, emphasizing their nature as an active material. A holographic image requires user interaction to be viewed, and the materials are delicate and prone to deterioration. Specifically, we outline our methods for creating digital preservation copies of holographic artworks by documenting the wavefront of propagating light. In so doing, we demonstrate why it remains challenging to faithfully capture their high spatial resolution, the full parallax, and deep depths of field without terabytes of data. In addition, we use noninvasive analytical techniques such as spectral imaging, X-ray fluorescence, and optical coherence tomography, to provide insights on hologram material properties. Through these studies we hope to address current concerns about the long term preservation of holograms while translating this artform into a digital format to entice new audiences.

physics.hist-ph↗

arXiv2021

A Two-stage Framework for Compound Figure Separation

Scientific literature contains large volumes of complex, unstructured figures that are compound in nature (i.e. composed of multiple images, graphs, and drawings). Separation of these compound figures is critical for information retrieval from these figures. In this paper, we propose a new strategy for compound figure separation, which decomposes the compound figures into constituent subfigures while preserving the association between the subfigures and their respective caption components. We propose a two-stage framework to address the proposed compound figure separation problem. In particular, the subfigure label detection module detects all subfigure labels in the first stage. Then, in the subfigure detection module, the detected subfigure labels help to detect the subfigures by optimizing the feature selection process and providing the global layout information as extra features. Extensive experiments are conducted to validate the effectiveness and superiority of the proposed framework, which improves the detection precision by 9%.

cs.CV↗

arXiv2021

LiveView: Dynamic Target-Centered MPI for View Synthesis

Existing Multi-Plane Image (MPI) based view-synthesis methods generate an MPI aligned with the input view using a fixed number of planes in one forward pass. These methods produce fast, high-quality rendering of novel views, but rely on slow and computationally expensive MPI generation methods unsuitable for real-time applications. In addition, most MPI techniques use fixed depth/disparity planes which cannot be modified once the training is complete, hence offering very little flexibility at run-time. We propose LiveView - a novel MPI generation and rendering technique that produces high-quality view synthesis in real-time. Our method can also offer the flexibility to select scene-dependent MPI planes (number of planes and spacing between them) at run-time. LiveView first warps input images to target view (target-centered) and then learns to generate a target view centered MPI, one depth plane at a time (dynamically). The method generates high-quality renderings, while also enabling fast MPI generation and novel view synthesis. As a result, LiveView enables real-time view synthesis applications where an MPI needs to be updated frequently based on a video stream of input views. We demonstrate that LiveView improves the quality of view synthesis while being 70 times faster at run-time compared to state-of-the-art MPI-based methods.

cs.CV↗

arXiv2021

Plot2Spectra: an Automatic Spectra Extraction Tool

Different types of spectroscopies, such as X-ray absorption near edge structure (XANES) and Raman spectroscopy, play a very important role in analyzing the characteristics of different materials. In scientific literature, XANES/Raman data are usually plotted in line graphs which is a visually appropriate way to represent the information when the end-user is a human reader. However, such graphs are not conducive to direct programmatic analysis due to the lack of automatic tools. In this paper, we develop a plot digitizer, named Plot2Spectra, to extract data points from spectroscopy graph images in an automatic fashion, which makes it possible for large scale data acquisition and analysis. Specifically, the plot digitizer is a two-stage framework. In the first axis alignment stage, we adopt an anchor-free detector to detect the plot region and then refine the detected bounding boxes with an edge-based constraint to locate the position of two axes. We also apply scene text detector to extract and interpret all tick information below the x-axis. In the second plot data extraction stage, we first employ semantic segmentation to separate pixels belonging to plot lines from the background, and from there, incorporate optical flow constraints to the plot line pixels to assign them to the appropriate line (data instance) they encode. Extensive experiments are conducted to validate the effectiveness of the proposed plot digitizer, which shows that such a tool could help accelerate the discovery and machine learning of materials properties.

cs.CV↗

arXiv2021

A Joint Intensity-Neuromorphic Event Imaging System for Resource Constrained Devices

We present a novel adaptive multi-modal intensity-event algorithm to optimize an overall objective of object tracking under bit rate constraints for a host-chip architecture. The chip is a computationally resource constrained device acquiring high resolution intensity frames and events, while the host is capable of performing computationally expensive tasks. We develop a joint intensity-neuromorphic event rate-distortion compression framework with a quadtree (QT) based compression of intensity and events scheme. The data acquisition on the chip is driven by the presence of objects of interest in the scene as detected by an object detector. The most informative intensity and event data are communicated to the host under rate constraints, so that the best possible tracking performance is obtained. The detection and tracking of objects in the scene are done on the distorted data at the host. Intensity and events are jointly used in a fusion framework to enhance the quality of the distorted images, so as to improve the object detection and tracking performance. The performance assessment of the overall system is done in terms of the multiple object tracking accuracy (MOTA) score. Compared to using intensity modality only, there is an improvement in MOTA using both these modalities in different scenarios.

eess.IV↗

arXiv2021

Improving Acquisition Speed of X-Ray Ptychography through Spatial Undersampling and Regularization

X-ray ptychography is one of the versatile techniques for nanometer resolution imaging. The magnitude of the diffraction patterns is recorded on a detector and the phase of the diffraction patterns is estimated using phase retrieval techniques. Most phase retrieval algorithms make the solution well-posed by relying on the constraints imposed by the overlapping region between neighboring diffraction pattern samples. As the overlap between neighboring diffraction patterns reduces, the problem becomes ill-posed and the object cannot be recovered. To avoid the ill-posedness, we investigate the effect of regularizing the phase retrieval algorithm with image priors for various overlap ratios between the neighboring diffraction patterns. We show that the object can be faithfully reconstructed at low overlap ratios by regularizing the phase retrieval algorithm with image priors such as Total-Variation and Structure Tensor Prior. We also show the effectiveness of our proposed algorithm on real data acquired from an IC chip with a coherent X-ray beam.

eess.IV↗

arXiv2021

Removing Blocking Artifacts in Video Streams Using Event Cameras

In this paper, we propose EveRestNet, a convolutional neural network designed to remove blocking artifacts in videostreams using events from neuromorphic sensors. We first degrade the video frame using a quadtree structure to produce the blocking artifacts to simulate transmitting a video under a heavily constrained bandwidth. Events from the neuromorphic sensor are also simulated, but are transmitted in full. Using the distorted frames and the event stream, EveRestNet is able to improve the image quality.

eess.IV↗

arXiv2021

EXSCLAIM! -- An automated pipeline for the construction of labeled materials imaging datasets from literature

Due to recent improvements in image resolution and acquisition speed, materials microscopy is experiencing an explosion of published imaging data. The standard publication format, while sufficient for traditional data ingestion scenarios where a select number of images can be critically examined and curated manually, is not conducive to large-scale data aggregation or analysis, hindering data sharing and reuse. Most images in publications are presented as components of a larger figure with their explicit context buried in the main body or caption text, so even if aggregated, collections of images with weak or no digitized contextual labels have limited value. To solve the problem of curating labeled microscopy data from literature, this work introduces the EXSCLAIM! Python toolkit for the automatic EXtraction, Separation, and Caption-based natural Language Annotation of IMages from scientific literature. We highlight the methodology behind the construction of EXSCLAIM! and demonstrate its ability to extract and label open-source scientific images at high volume.

cs.IR↗

arXiv2021

An Adaptive Video Acquisition Scheme for Object Tracking and its Performance Optimization

We present a novel adaptive host-chip modular architecture for video acquisition to optimize an overall objective task constrained under a given bit rate. The chip is a high resolution imaging sensor such as gigapixel focal plane array (FPA) with low computational power deployed on the field remotely, while the host is a server with high computational power. The communication channel data bandwidth between the chip and host is constrained to accommodate transfer of all captured data from the chip. The host performs objective task specific computations and also intelligently guides the chip to optimize (compress) the data sent to host. This proposed system is modular and highly versatile in terms of flexibility in re-orienting the objective task. In this work, object tracking is the objective task. While our architecture supports any form of compression/distortion, in this paper we use quadtree (QT)-segmented video frames. We use Viterbi (Dynamic Programming) algorithm to minimize the area normalized weighted rate-distortion allocation of resources. The host receives only these degraded frames for analysis. An object detector is used to detect objects, and a Kalman Filter based tracker is used to track those objects. Evaluation of system performance is done in terms of Multiple Object Tracking Accuracy (MOTA) metric. In this proposed novel architecture, performance gains in MOTA is obtained by twice training the object detector with different system generated distortions as a novel 2-step process. Additionally, object detector is assisted by tracker to upscore the region proposals in the detector to further improve the performance.

eess.IV↗

arXiv2021

Semantic Segmentation for Compound figures

Scientific literature contains large volumes of unstructured data,with over 30\% of figures constructed as a combination of multiple images, these compound figures cannot be analyzed directly with existing information retrieval tools. In this paper, we propose a semantic segmentation approach for compound figure separation, decomposing the compound figures into "master images". Each master image is one part of a compound figure governed by a subfigure label (typically "(a), (b), (c), etc"). In this way, the separated subfigures can be easily associated with the description information in the caption. In particular, we propose an anchor-based master image detection algorithm, which leverages the correlation between master images and subfigure labels and locates the master images in a two-step manner. First, a subfigure label detector is built to extract the global layout information of the compound figure. Second, the layout information is combined with local features to locate the master images. We validate the effectiveness of proposed method on our labeled testing dataset both quantitatively and qualitatively.

cs.CV↗

arXiv2021

SkinScan: Low-Cost 3D-Scanning for Dermatologic Diagnosis and Documentation

The utilization of computational photography becomes increasingly essential in the medical field. Today, imaging techniques for dermatology range from two-dimensional (2D) color imagery with a mobile device to professional clinical imaging systems measuring additional detailed three-dimensional (3D) data. The latter are commonly expensive and not accessible to a broad audience. In this work, we propose a novel system and software framework that relies only on low-cost (and even mobile) commodity devices present in every household to measure detailed 3D information of the human skin with a 3D-gradient-illumination-based method. We believe that our system has great potential for early-stage diagnosis and monitoring of skin diseases, especially in vastly populated or underdeveloped areas.

eess.IV↗

arXiv2020

E3D: Event-Based 3D Shape Reconstruction

3D shape reconstruction is a primary component of augmented/virtual reality. Despite being highly advanced, existing solutions based on RGB, RGB-D and Lidar sensors are power and data intensive, which introduces challenges for deployment in edge devices. We approach 3D reconstruction with an event camera, a sensor with significantly lower power, latency and data expense while enabling high dynamic range. While previous event-based 3D reconstruction methods are primarily based on stereo vision, we cast the problem as multi-view shape from silhouette using a monocular event camera. The output from a moving event camera is a sparse point set of space-time gradients, largely sketching scene/object edges and contours. We first introduce an event-to-silhouette (E2S) neural network module to transform a stack of event frames to the corresponding silhouettes, with additional neural branches for camera pose regression. Second, we introduce E3D, which employs a 3D differentiable renderer (PyTorch3D) to enforce cross-view 3D mesh consistency and fine-tune the E2S and pose network. Lastly, we introduce a 3D-to-events simulation pipeline and apply it to publicly available object datasets and generate synthetic event/silhouette training pairs for supervised learning.

cs.CV↗

arXiv2020

2-Step Sparse-View CT Reconstruction with a Domain-Specific Perceptual Network

Computed tomography is widely used to examine internal structures in a non-destructive manner. To obtain high-quality reconstructions, one typically has to acquire a densely sampled trajectory to avoid angular undersampling. However, many scenarios require a sparse-view measurement leading to streak-artifacts if unaccounted for. Current methods do not make full use of the domain-specific information, and hence fail to provide reliable reconstructions for highly undersampled data. We present a novel framework for sparse-view tomography by decoupling the reconstruction into two steps: First, we overcome its ill-posedness using a super-resolution network, SIN, trained on the sparse projections. The intermediate result allows for a closed-form tomographic reconstruction with preserved details and highly reduced streak-artifacts. Second, a refinement network, PRN, trained on the reconstructions reduces any remaining artifacts. We further propose a light-weight variant of the perceptual-loss that enhances domain-specific information, boosting restoration accuracy. Our experiments demonstrate an improvement over current solutions by 4 dB.

eess.IV↗

arXiv2020

Lossy Event Compression based on Image-derived Quad Trees and Poisson Disk Sampling

With several advantages over conventional RGB cameras, event cameras have provided new opportunities for tackling visual tasks under challenging scenarios with fast motion, high dynamic range, and/or power constraint. Yet unlike image/video compression, the performance of event compression algorithm is far from satisfying and practical. The main challenge for compressing events is the unique event data form, i.e., a stream of asynchronously fired event tuples each encoding the 2D spatial location, timestamp, and polarity (denoting an increase or decrease in brightness). Since events only encode temporal variations, they lack spatial structure which is crucial for compression. To address this problem, we propose a novel event compression algorithm based on a quad tree (QT) segmentation map derived from the adjacent intensity images. The QT informs 2D spatial priority within the 3D space-time volume. In the event encoding step, events are first aggregated over time to form polarity-based event histograms. The histograms are then variably sampled via Poisson Disk Sampling prioritized by the QT based segmentation map. Next, differential encoding and run length encoding are employed for encoding the spatial and polarity information of the sampled events, respectively, followed by Huffman encoding to produce the final encoded events. Our Poisson Disk Sampling based Lossy Event Compression (PDS-LEC) algorithm performs rate-distortion based optimal allocation. On average, our algorithm achieves greater than 6x compression compared to the state of the art.

cs.CV↗

arXiv2020

Synthetic Wavelength Holography: An Extension of Gabor's Holographic Principle to Imaging with Scattered Wavefronts

The presence of a scattering medium in the imaging path between an object and an observer is known to severely limit the visual acuity of the imaging system. We present an approach to circumvent the deleterious effects of scattering, by exploiting spectral correlations in scattered wavefronts. Our method draws inspiration from Gabor's attempts to improve the resolving power of electron microscopes by recording aberrated wavefronts at electron wavelengths, followed by aberration correction and playback at optical wavelengths. We extend the notion to scattered wavefronts, by interpreting the scattering of light as a source of randomized aberration. We compensate for these aberrations by mixing speckle fields recorded at two closely spaced optical wavelengths, and replaying the computationally assembled wavefront at a 'Synthetic Wavelength'. An attractive feature of our method is that it accommodates a wide variety of scattering mechanisms and operates at the physical limits of imaging in the presence of scatter. Moreover, our findings are applicable to other wave phenomena, opening up new avenues for imaging with scattered wavefronts.

physics.optics↗