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Oliver E. Jensen

Publications and source records attributed to Oliver E. Jensen.

At least 19 recordsLinked to original sources

The evolution of a gas current injected into a curved axisymmetric porous channel

We investigate gas injection into axisymmetric water-saturated porous channels with Gaussian and parabolic profiles, as idealized models of underground gas storage in dome-shaped anticlines. Exploiting the slenderness of each channel, we derive an evolution equation for the gas/liquid interface using a composite asymptotic approximation that accommodates large channel slopes and has a simplified small-slope form describing spreading in weakly curved channels. In the high gas-mobility limit, in contrast with flat planar channels, buoyancy influences the dynamics through different mechanisms in each geometry. For gas injected steadily into a Gaussian channel, buoyancy can continually affect the flow due to the attenuation of the gas velocity caused by axisymmetry. In parabolic channels, the increasing channel slope ensures that buoyancy eventually influences the flow, at a timescale depending on injection rate and fluid properties. Asymptotic analysis of the parabolic-channel flow reveals five temporal regimes, each with multiple spatial regions and a distinct spreading rate, reflecting the evolving spatiotemporal competition between injection and buoyancy. Initially, a thin film of gas spreads along the upper boundary; the channel slope and elongation of the film then generate a hydrostatic pressure gradient, which strengthens until buoyancy arrests the upper contact line and thickens the film. Beneath the film, liquid then drains until the interface flattens under buoyancy. Analytical solutions of reduced-order models capture interface evolution and contact-line motion through each regime and are validated against full numerical simulations. These results have implications for subsurface hydrogen and CO$_2$ storage, where a horizontal interface that advances vertically enhances both safety and storage efficiency.

physics.flu-dyn↗

Harmonic fields and the mechanical response of a cellular monolayer to ablation

Multicellular tissues, such as the epithelium coating a developing embryo, often combine complex tissue shapes with heterogeneity in the spatial arrangement of individual cells. Discrete approximations, such as the cell vertex model, can accommodate these geometric features, but techniques for analysis of such models are underdeveloped. Here, we express differential operators defined on a network representing a monolayer of confluent cells in a framework inspired by discrete exterior calculus, considering scalar fields defined over cell vertices and centres and vector fields defined over cell edges. We achieve this by defining Hodge stars, wedge products and musical isomorphisms that are appropriate for a disordered monolayer for which cell edges and links between cell centres are not orthogonal, as is generic for epithelia. We use this framework to evaluate the harmonic vector field arising in an ablated planar monolayer, demonstrating an approximate 1/\textit{r} scaling of the upper bound of the field's amplitude, where \textit{r} is the distance from the ablation. Using a vertex model that incorporates osmotic effects, we then calculate the mechanical response of a monolayer in a jammed state to ablation. Perturbation displacements exhibit long-range coherence, monopolar and quadrupolar features, and an approximate 1/\textit{r} near-hole upper-bound scaling, implicating the harmonic field. The upper bounds on perturbation stress amplitudes scale approximately like 1/\textit{r}$^2$, a feature relevant to long-range mechanical signalling.

q-bio.QM↗

Dynamics of a compressible gas injected into a confined porous layer

Underground gas storage is a critical technology in global efforts to mitigate climate change. In particular, hydrogen storage offers a promising solution for integrating renewable energy into the power grid. When injected into the subsurface, hydrogen's low viscosity compared to the resident brine causes a bubble of hydrogen trapped beneath caprock to spread rapidly into an aquifer through release of a thin gas layer above the brine, complicating recovery. In long aquifers, the large viscous pressure drop between source and outlet induces significant pressure variations, potentially leading to substantial density changes in the injected gas. To examine the role of gas compressibility in the spreading dynamics, we use long-wave theory to derive coupled nonlinear evolution equations for the gas pressure and gas/liquid interface height, focusing on the limit of long domains, weak gas compressibility and low gas/liquid viscosity ratio. Simulations are supplemented with a comprehensive asymptotic analysis of parameter regimes. Unlike the near-incompressible limit, in which gas spreading rates are dictated by the source strength and viscosity ratio, and compressive effects are transient, we show how compression of the main gas bubble can generate dynamic pressure changes that are coupled to those in the thin gas layer that spreads over the liquid, with compressive effects having a sustained influence along the layer. This coupling allows compressibility to reduce spreading rates and gas pressures. We characterise this behaviour via a set of low-order models that reveal dominant scalings, highlighting the role of compressibility in mediating the evolution of the gas layer.

physics.flu-dyn↗

Modelling bulk mechanical effects in a planar cellular monolayer

We use a three-dimensional formulation of the cell vertex model to describe the mechanical properties of a confluent planar monolayer of prismatic cells. Treating cell height as a degree of freedom, we reduce the model to a two-dimensional form. We show how bulk effects, associated with cell volume and total surface area, lead to coupling between energy variations arising from changes in cell apical area and apical perimeter, a feature missing from standard implementations of the two-dimensional vertex model. The model identifies five independent mechanisms by which cells can lose in-plane rigidity, relating to variations in total cell surface area, the strength of lateral adhesion, and constrictive forces at the apical cortex. The model distinguishes bulk from in-plane stresses, and identifies two primary measures of cell shear stress. In the rigid regime, the model shows how lateral crowding in a disordered isolated monolayer can lead to cell elongation towards the monolayer centre. We examine loss of in-plane rigidity in a disordered monolayer and connect isolated patches of stiffness that persist during the rigidity transition to the spectrum of a Laplacian matrix. This approach enables bulk mechanical effects in an epithelium to be captured within a two-dimensional framework.

physics.bio-ph↗

Viscoplasticity can stabilise liquid collar motion on vertical cylinders

Liquid films coating vertical cylinders can form annular liquid collars which translate downwards under gravity. We investigate the dynamics of a thin viscoplastic liquid film coating the interior or exterior of a vertical cylindrical tube, quantifying how the yield stress modifies both the Rayleigh-Plateau instability leading to collar formation and the translation of collars down the tube. We use thin-film theory to derive an evolution equation for the layer thickness, which we solve numerically to examine the nonlinear dynamics. Instability and collar formation occur when gravity is sufficiently strong to make the fluid yield initially. We use matched asymptotics to derive a model describing the quasi-steady translation of a slender liquid collar when the Bond number is small. The structure of the asymptotic solution for a viscoplastic collar shares some features with the Newtonian version, but there are several novel asymptotic regions that emerge at the two ends of the collar. The global force balance, which determines the collar's speed, is modified by a leading-order contribution from viscous drag in the collar when the liquid is viscoplastic. We use the asymptotic model to describe slow changes in collar volume when the film thicknesses ahead of, and behind, the collar are unequal. When the film thickness ahead of the collar is less than a critical value that we determine, viscoplastic collars adjust their volume and reach a steadily-translating state. This contrasts with the Newtonian problem, where the only state in which steady translation occurs is unstable to small changes in the film thickness.

physics.flu-dyn↗

A functional exchange shunt in the umbilical cord: the role of coiling in solute and heat transfer

The umbilical cord plays a critical role in delivering nutrients and oxygen from the placenta to the fetus through the umbilical vein, while the two umbilical arteries carry deoxygenated blood with waste products back to the placenta. Although solute exchange in the placenta has been extensively studied, exchange within the cord tissue has not been investigated. Here, we explore the hypothesis that the coiled structure of the umbilical cord could strengthen diffusive coupling between the arteries and the vein, resulting in a functional shunt. We calculate the diffusion of solutes, such as oxygen, and heat in the umbilical cord to quantify how this shunt is affected by vascular configuration within the cord. We demonstrate that the shunt is enhanced by coiling and vessel proximity. Furthermore, our model predicts that typical vascular configurations of the human cord tend to minimise shunting, which could otherwise disrupt thermal regulation of the fetus. We also show that the exchange, amplified by coiling, can provide additional oxygen supply to the cord tissue surrounding the umbilical vessels.

q-bio.TO↗

Drag reduction in surfactant-contaminated superhydrophobic channels at high Péclet numbers

Motivated by microfluidic applications, we investigate drag reduction in laminar pressure-driven flows in channels with streamwise-periodic superhydrophobic surfaces (SHSs) contaminated with soluble surfactant. We develop a model in the long-wave and weak-diffusion limit, where the streamwise SHS period is large compared to the channel height and the Péclet number is large. Using asymptotic and numerical techniques, we determine the influence of surfactant on drag reduction in terms of the relative strength of advection, diffusion, Marangoni effects and bulk-surface exchange. In scenarios with strong exchange, the drag reduction exhibits a complex dependence on the thickness of the bulk-concentration boundary layer and surfactant strength. Strong Marangoni effects immobilise the interface through a linear surfactant distribution, whereas weak Marangoni effects yield a quasi-stagnant cap. The quasi-stagnant cap has an intricate structure with an upstream slip region, followed by intermediate inner regions, and a quasi-stagnant region that is mediated by weak bulk diffusion. The quasi-stagnant region differs from the immobile region of a classical stagnant cap, observed for instance in surfactant-laden air bubbles in water, by displaying weak slip. As exchange weakens, the bulk and interface decouple: the surfactant distribution is linear when the surfactant is strong, whilst it forms a classical stagnant cap when the surfactant is weak. The asymptotic solutions offer closed-form predictions of drag reduction across much of the parameter space, providing practical utility and enhancing understanding of surfactant dynamics in flows over SHSs.

physics.flu-dyn↗

Non-local impact of distal airway constrictions on patterns of inhaled particle deposition

Airway constriction and blockage in obstructive lung diseases cause ventilation heterogeneity and create barriers to effective drug deposition. Established computational particle-deposition models have not accounted for these impacts of disease. We present a new particle-deposition model that calculates ventilation based on the resistance of each airway, such that ventilation responds to airway constriction. The model incorporates distal airway constrictions representative of cystic fibrosis, allowing us to investigate the resulting impact on patterns of deposition. Unlike previous models, our model predicts how constrictions affect deposition in airways throughout the lungs, not just in the constricted airways. Deposition is reduced in airways directly distal and proximal to constrictions. When constrictions are clustered together, central-airways deposition can increase significantly in regions away from constrictions, but distal-airways deposition in those regions remains largely unchanged. We use our model to calculate lung clearance index (LCI), a clinical measure of ventilation heterogeneity, after applying constrictions of varying severities in one lobe. We find an increase in LCI coinciding with significantly reduced deposition in the affected lobe. Our results show how the model provides a framework for development of computational tools that capture the impacts of airway disease, which could significantly affect predictions of regional dosing.

q-bio.TO↗

Relaxation and noise-driven oscillations in a model of mitotic spindle dynamics

During cell division, the mitotic spindle moves dynamically through the cell to position the chromosomes and determine the ultimate spatial position of the two daughter cells. These movements have been attributed to the action of cortical force generators which pull on the astral microtubules to position the spindle, as well as pushing events by these same microtubules against the cell cortex and plasma membrane. Attachment and detachment of cortical force generators working antagonistically against centring forces of microtubules have been modelled previously (Grill et al. 2005, Phys. Rev. Lett. 94:108104) via stochastic simulations and mean-field Fokker-Planck equations (describing random motion of force generators) to predict oscillations of a spindle pole in one spatial dimension. Using systematic asymptotic methods, we reduce the Fokker-Planck system to a set of ordinary differential equations (ODEs), consistent with a set proposed by Grill et al., which can provide accurate predictions of the conditions for the Fokker-Planck system to exhibit oscillations. In the limit of small restoring forces, we derive an algebraic prediction of the amplitude of spindle-pole oscillations and demonstrate the relaxation structure of nonlinear oscillations. We also show how noise-induced oscillations can arise in stochastic simulations for conditions in which the mean-field Fokker-Planck system predicts stability, but for which the period can be estimated directly by the ODE model and the amplitude by a related stochastic differential equation that incorporates random binding kinetics.

q-bio.SC↗

Spectral approaches to stress relaxation in epithelial monolayers

We investigate the viscoelastic relaxation to equilibrium of a disordered planar epithelium described using the cell vertex model. In its standard form, the model is formulated as coupled evolution equations for the locations of vertices of confluent polygonal cells. Exploiting the model's gradient-flow structure, we use singular-value decomposition to project modes of deformation of vertices onto modes of deformation of cells. We show how eigenmodes of discrete Laplacian operators (specified by constitutive assumptions related to dissipation and mechanical energy) provide a spatial basis for evolving fields, and demonstrate how the operators can incorporate approximations of conventional spatial derivatives. We relate the spectrum of relaxation times to the eigenvalues of the Laplacians, modified by corrections that account for the fact that the cell network (and therefore the Laplacians) evolve during relaxation to an equilibrium prestressed state, providing the monolayer with geometric stiffness. While dilational modes of the Laplacians capture rapid relaxation in some circumstances, showing diffusive dynamics, geometric stiffness is typically a dominant source of monolayer rigidity, as we illustrate for monolayers exposed to unsteady stretching deformations.

physics.bio-ph↗

Correction and standardisation of lung oscillometry techniques using parameter inference: A study group report

This report relates to a study group hosted by the EPSRC funded network, Integrating data-driven BIOphysical models into REspiratory MEdicine (BIOREME), and supported by The Insigneo Institute and The Knowledge Transfer Network. The BIOREME network hosts events, including this study group, to bring together multi-disciplinary researchers, clinicians, companies and charities to catalyse research in the applications of mathematical modelling for respiratory medicine. The goal of this study group was to provide an interface between companies, clinicians, and mathematicians to develop mathematical tools to the problems presented. The study group was held at The University of Sheffield on the 17 - 20 April 2023 and was attended by 24 researchers from 13 different institutions. This report relates to a challenge presented by Arete Medical Technologies relating to impulse oscillometry (IOS), whereby a short pressure oscillation is imposed at a person's mouth during normal breathing, usually by a loudspeaker. The resulting pressure and flow rate changes can be used to the impedance of the airways, which in turn can provide proxy measurements for (patho)physiological changes in the small airways. Disentangling the signal so that airway mechanics can be measured accurately (and device properties/environmental effects can be accounted for) remains an open challenge that has the potential to significantly improve the device and its translation to clinic. In this report, several approaches to this problem, and the wider problem of interpreting oscillometry resuts are explored.

physics.med-ph↗

Confinement-induced drift in Marangoni-driven transport of surfactant: a Lagrangian perspective

Successive drops of coloured ink mixed with surfactant are deposited onto a thin film of water to create marbling patterns in the Japanese art technique of Suminagashi. To understand the physics behind this and other applications where surfactant transports adsorbed passive matter at gas-liquid interfaces, we investigate the Lagrangian trajectories of material particles on the surface of a thin film of a confined viscous liquid under Marangoni-driven spreading by an insoluble surfactant. We study a model problem in which several deposits of exogenous surfactant simultaneously spread on a bounded rectangular surface containing a pre-existing endogenous surfactant. We derive Eulerian and Lagrangian formulations of the equations governing the Marangoni-driven surface flow. Both descriptions show how confinement can induce drift and flow reversal during spreading. The Lagrangian formulation captures trajectories without the need to calculate surfactant concentrations; however, concentrations can still be inferred from the Jacobian of the map from initial to current particle position. We explore a link between thin-film surfactant dynamics and optimal transport theory to find the approximate equilibrium locations of material particles for any given initial condition by solving a Monge-Ampère equation. We find that, as the endogenous surfactant concentration $δ$ vanishes, the equilibrium shapes of deposits using the Monge-Ampère approximation approach polygons with corners curving in a self-similar manner over lengths scaling as $δ^{1/2}$. We explore how Suminagashi patterns may be produced by using computationally efficient successive solutions of the Monge-Ampère equation.

physics.flu-dyn↗

Unsteady evolution of slip and drag in surfactant-contaminated superhydrophobic channels

Recognising that surfactants can impede the drag reduction resulting from superhydrophobic surfaces (SHSs), we investigate the impact of spatio-temporal fluctuations in surfactant concentration on the drag-reduction properties of SHSs. We model the unsteady transport of soluble surfactant in a channel flow bounded by two SHSs. The flow is laminar, pressure-driven, and the SHSs are periodic in the streamwise and spanwise directions. We assume that the channel length is much longer than the streamwise period, the streamwise period is much longer than the channel height and spanwise period, and bulk diffusion is sufficiently strong for cross-channel concentration gradients to be small. By combining long-wave and homogenisation theories, we derive an unsteady advection-diffusion equation for surfactant-flux transport over the length of the channel, which is coupled to a quasi-steady advection-diffusion equation for surfactant transport over individual plastrons. As diffusion over the length of the channel is typically small, the surfactant flux is governed by a nonlinear wave equation. In the fundamental case of the transport of a bolus of surfactant, we predict its propagation speed and describe its nonlinear evolution via interaction with the SHS. The propagation speed can fall below the average streamwise velocity as the surfactant adsorbs and rigidifies the plastrons. Smaller concentrations of surfactant are advected faster than larger ones, so that wave-steepening effects can lead to shock formation in the surfactant-flux distribution. Our asymptotic results reveal how unsteady surfactant transport can affect the spatio-temporal evolution of the slip velocity, drag reduction and effective slip length in SHS channels.

physics.flu-dyn↗

Exogenous-endogenous surfactant interaction yields heterogeneous spreading in complex branching networks

Experiments have shown that surfactant introduced to a liquid-filled maze can find the solution path. We reveal how the maze-solving dynamics arise from interactions between the added surfactant and endogenous surfactant present at the liquid surface. We simulate the dynamics using a nonlinear model solved with a discrete mimetic scheme on a graph. Endogenous surfactant transforms local spreading into a non-local problem with an omniscient view of the maze geometry, key to the maze-solving dynamics. Our results offer insight into surfactant-driven transport in complex networks such as lung airways.

physics.flu-dyn↗

Surfactant amplifies yield-stress effects in the capillary instability of a film coating a tube

To assess how the presence of surfactant in lung airways alters the flow of mucus that leads to plug formation and airway closure, we investigate the effect of insoluble surfactant on the instability of a viscoplastic liquid coating the interior of a cylindrical tube. Evolution equations for the layer thickness using thin-film and long-wave approximations are derived that incorporate yield-stress effects and capillary and Marangoni forces. Using numerical simulations and asymptotic analysis of the thin-film system, we quantify how the presence of surfactant slows growth of the Rayleigh-Plateau instability, increases the size of initial perturbation required to trigger instability and decreases the final peak height of the layer. When the surfactant strength is large, the thin-film dynamics coincide with the dynamics of a surfactant-free layer but with time slowed by a factor of four and the capillary Bingham number, a parameter proportional to the yield stress, exactly doubled. By solving the long-wave equations numerically, we quantify how increasing surfactant strength can increase the critical layer thickness for plug formation to occur and delay plugging. The previously established effect of the yield stress in suppressing plug formation [Shemilt et al., J. Fluid Mech., 2022, vol. 944, A22] is shown to be amplified by introducing surfactant. We discuss the implications of these results for understanding the impact of surfactant deficiency and increased mucus yield stress in obstructive lung diseases.

physics.flu-dyn↗

Laminar drag reduction in surfactant-contaminated superhydrophobic channels

While superhydrophobic surfaces (SHSs) show promise for drag reduction applications, their performance can be compromised by traces of surfactant, which generate Marangoni stresses that increase drag. This question is addressed for soluble surfactant in a three-dimensional laminar channel flow, with periodic SHSs on both walls. We assume that diffusion is sufficiently strong for cross-channel concentration gradients to be small. Exploiting a long-wave theory that accounts for a rapid transverse Marangoni-driven flow, we derive a one-dimensional model for surfactant evolution, which allows us to predict the drag reduction across the parameter space. The system exhibits multiple regimes, involving competition between Marangoni effects, bulk and interfacial diffusion, advection and shear dispersion. We map out asymptotic regions in the high-dimensional parameter space, deriving approximations of the drag reduction in each region and comparing them to numerical simulations. Our atlas of maps provides a comprehensive analytical guide for designing surfactant-contaminated channels with SHSs, to maximise the drag reduction in applications.

physics.flu-dyn↗

A model for slip and drag in turbulent flows over superhydrophobic surfaces with surfactant

Superhydrophobic surfaces (SHSs) can reduce the friction drag in turbulent flows. In the laminar regime, it has been shown that trace amounts of surfactant can negate this drag reduction, at times rendering these surfaces no better than solid walls (Peaudecerf et al., Proc. Natl. Acad. Sci. USA 114(28), 7254-9, 2017). However, surfactant effects on the drag-reducing properties of SHSs have not yet been studied under turbulent flow conditions, where predicting the effects of surfactant in direct numerical simulations remains expensive by today's standards. We present a model for turbulent flow inclusive of surfactant, in either a channel or boundary-layer configuration, over long but finite-length streamwise ridges that are periodic in the spanwise direction, with period $P$ and gas fraction $φ$. We adopt a technique based on a shifted log law to acquire an expression for the drag reduction. The average streamwise and spanwise slip lengths are derived by introducing a local laminar model within the viscous sublayer, whereby the effect of surfactant is modelled by modifying the average streamwise and spanwise slip lengths. Our model agrees with available laboratory experimental data from the literature when conditions are clean (surfactant-free), or when there are low surfactant levels. However, we find an appreciable drag increase for larger background surfactant concentrations that are characteristic of turbulent flows over SHSs for marine applications.

physics.flu-dyn↗

Couple stresses and discrete potentials in the vertex model of cellular monolayers

The vertex model is widely used to simulate the mechanical properties of confluent epithelia and other multicellular tissues. This inherently discrete framework allows a Cauchy stress to be attributed to each cell, and its symmetric component has been widely reported, at least for planar monolayers. Here we consider the stress attributed to the neighbourhood of each tricellular junction, evaluating in particular its leading-order antisymmetric component and the associated couple stresses, which characterise the degree to which individual cells experience (and resist) in-plane bending deformations. We develop discrete potential theory for localised monolayers having disordered internal structure and use this to derive the analogues of Airy and Mindlin stress functions. These scalar potentials typically have broad-banded spectra, highlighting the contributions of small-scale defects and boundary-layers to global stress patterns. An affine approximation attributes couple stresses to pressure differences between cells sharing a trijunction, but simulations indicate an additional role for non-affine deformations.

q-bio.TO↗