SearcharxivSearch

arXiv subjects

Oliver Townsend

Publications and source records attributed to Oliver Townsend.

2 recordsLinked to original sources

Alternating steepest descent methods for tensor completion with applications to spectromicroscopy

In this paper we develop two new Tensor Alternating Steepest Descent algorithms for tensor completion in the low-rank $\star_{M}$-product format, whereby we aim to reconstruct an entire low-rank tensor from a small number of measurements thereof. Both algorithms are rooted in the Alternating Steepest Descent (ASD) method for matrix completion, first proposed in [J. Tanner and K. Wei, Appl. Comput. Harmon. Anal., 40 (2016), pp. 417-429]. In deriving the new methods we target the X-ray spectromicroscopy undersampling problem, whereby data are collected by scanning a specimen on a rectangular viewpoint with X-ray beams of different energies. The recorded absorptions coefficients of the mixed specimen materials are naturally stored in a third-order tensor, with spatial horizontal and vertical axes, and an energy axis. To speed the X-ray spectromicroscopy measurement process up, only a fraction of tubes from (a reshaped version of) this tensor are fully scanned, leading to a tensor completion problem. In this framework we can apply any transform (such as the Fourier transform) to the tensor tube by tube, providing a natural way to work with the $\star_{M}$-tensor algebra, and propose: (1) a tensor completion algorithm that is essentially ASD reformulated in the $\star_{M}$-induced metric space and (2) a tensor completion algorithm that solves a set of (readily parallelizable) independent matrix completion problems for the frontal slices of the transformed tensor. The two new methods are tested on real X-ray spectromicroscopy data, demonstrating that they achieve the same reconstruction error with fewer samples from the tensor compared to the matrix completion algorithms applied to a flattened tensor.

math.NA

Undersampling Raster Scans in Spectromicroscopy for reduced dose and faster measurements

Combinations of spectroscopic analysis and microscopic techniques are used across many disciplines of scientific research, including material science, chemistry and biology. X-ray spectromicroscopy, in particular, is a powerful tool used for studying chemical state distributions at the micro and nano scales. With the beam fixed, a specimen is typically rastered through the probe with continuous motion and a range of multimodal data is collected at fixed time intervals. The application of this technique is limited in some areas due to: long scanning times to collect the data, either because of the area/volume under study or the compositional properties of the specimen; and material degradation due to the dose absorbed during the measurement. In this work, we propose a novel approach for reducing the dose and scanning times by undersampling the raster data. This is achieved by skipping rows within scans and reconstructing the x-ray spectromicroscopic measurements using low-rank matrix completion. The new method is robust and allows for x 5-6 reduction in sampling. Experimental results obtained on real data are illustrated.

physics.med-ph