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Olivier C Martin

Publications and source records attributed to Olivier C Martin.

3 recordsLinked to original sources

Population size effects in evolutionary dynamics on neutral networks and toy landscapes

We study the dynamics of a population subject to selective pressures, evolving either on RNA neutral networks or in toy fitness landscapes. We discuss the spread and the neutrality of the population in the steady state. Different limits arise depending on whether selection or random drift are dominant. In the presence of strong drift we show that observables depend mainly on $M μ$, $M$ being the population size and $μ$ the mutation rate, while corrections to this scaling go as 1/M: such corrections can be quite large in the presence of selection if there are barriers in the fitness landscape. Also we find that the convergence to the large $M μ$ limit is linear in $1/M μ$. Finally we introduce a protocol that minimizes drift; then observables scale like 1/M rather than $1/(Mμ)$, allowing one to determine the large $M$ limit faster when $μ$ is small; furthermore the genotypic diversity increases from $O(\ln M)$ to $O(M)$.

q-bio.PE↗

New structural variation in evolutionary searches of RNA neutral networks

RNA secondary structure is an important computational model to understand how genetic variation maps into phenotypic (structural) variation. Evolutionary innovation in RNA structures is facilitated by neutral networks, large connected sets of RNA sequences that fold into the same structure. Our work extends and deepens previous studies on neutral networks. First, we show that even the 1-mutant neighborhood of a given sequence (genotype) G0 with structure (phenotype) P contains many structural variants that are not close to P. This holds for biological and generic RNA sequences alike. Second, we analyze the relation between new structures in the 1-neighborhoods of genotypes Gk that are only a moderate Hamming distance k away from G0, and the structure of G0 itself, both for biological and for generic RNA structures. Third, we analyze the relation between mutational robustness of a sequence and the distances of structural variants near this sequence. Our findings underscore the role of neutral networks in evolutionary innovation, and the role that high robustness can play in diminishing the potential for such innovation.

q-bio.PE↗

Scalings of domain wall energies in two dimensional Ising spin glasses

We study domain wall energies of two dimensional spin glasses. The scaling of these energies depends on the model's distribution of quenched random couplings, falling into three different classes. The first class is associated with the exponent theta =-0.28, the other two classes have theta = 0, as can be justified theoretically. In contrast to previous claims, we find that theta=0 does not indicate d=d_l but rather d <= d_l, where d_l is the lower critical dimension.

cond-mat.dis-nn↗