Searcharxiv⌕ Search

arXiv subjects

Omar Darwish

Publications and source records attributed to Omar Darwish.

35 records · Page 2Linked to original sources

Optimizing foreground mitigation for CMB lensing with combined multifrequency and geometric methods

A key challenge for current and upcoming CMB lensing measurements is their sensitivity to biases from extragalactic foregrounds, such as Sunyaev-Zeldovich (SZ) signals or cosmic infrared background emission. Several methods have been developed to mitigate these lensing foreground biases, dividing broadly into multi-frequency cleaning approaches and modifications to the estimator geometry, but how to optimally combine these methods has not yet been explored in detail. In this paper, we examine which combination of lensing foreground mitigation strategies is best able to reduce the impact of foreground contamination for a Simons-Observatory-like experiment while preserving maximal signal-to-noise. Although the optimal combination obtained depends on whether bias- or variance-reduction are prioritized and on whether polarization data is used, generally, we find that combinations involving both geometric (profile hardening, source hardening or shear) and multifrequency (symmetric cleaning) methods perform best. For lensing power spectrum measurements from temperature (polarization and temperature), our combined estimator methods are able to reduce the bias to the lensing amplitude below $σ/4$ or 0.3% (0.1%), a factor of 16 (30) lower than the standard QE bias, at a modest signal-to-noise cost of only 18% (12%). In contrast, single-method foreground-mitigation approaches struggle to reduce the bias to a negligible level below $σ/2$ without incurring a large noise penalty. For upcoming and current experiments, our combined methods therefore represent a promising approach for making lensing measurements with negligible foreground bias.

astro-ph.CO↗

The Atacama Cosmology Telescope: Summary of DR4 and DR5 Data Products and Data Access

Two recent large data releases for the Atacama Cosmology Telescope (ACT), called DR4 and DR5, are available for public access. These data include temperature and polarization maps that cover nearly half the sky at arcminute resolution in three frequency bands; lensing maps and component-separated maps covering ~ 2,100 deg^2 of sky; derived power spectra and cosmological likelihoods; a catalog of over 4,000 galaxy clusters; and supporting ancillary products including beam functions and masks. The data and products are described in a suite of ACT papers; here we provide a summary. In order to facilitate ease of access to these data we present a set of Jupyter IPython notebooks developed to introduce users to DR4, DR5, and the tools needed to analyze these data. The data products (excluding simulations) and the set of notebooks are publicly available on the NASA Legacy Archive for Microwave Background Data Analysis (LAMBDA); simulation products are available on the National Energy Research Scientific Computing Center (NERSC).

astro-ph.CO↗

The Atacama Cosmology Telescope: DR5 maps of 18,000 square degrees of the microwave sky from ACT 2008-2018 data

This paper presents a maximum-likelihood algorithm for combining sky maps with disparate sky coverage, angular resolution and spatially varying anisotropic noise into a single map of the sky. We use this to merge hundreds of individual maps covering the 2008-2018 ACT observing seasons, resulting in by far the deepest ACT maps released so far. We also combine the maps with the full Planck maps, resulting in maps that have the best features of both Planck and ACT: Planck's nearly white noise on intermediate and large angular scales and ACT's high-resolution and sensitivity on small angular scales. The maps cover over 18,000 square degrees, nearly half the full sky, at 100, 150 and 220 GHz. They reveal 4,000 optically-confirmed clusters through the Sunyaev Zel'dovich effect (SZ) and 18,500 point source candidates at $> 5σ$, the largest single collection of SZ clusters and millimeter wave sources to date. The multi-frequency maps provide millimeter images of nearby galaxies and individual Milky Way nebulae, and even clear detections of several nearby stars. Other anticipated uses of these maps include, for example, thermal SZ and kinematic SZ cluster stacking, CMB cluster lensing and galactic dust science. The method itself has negligible bias. However, due to the preliminary nature of some of the component data sets, we caution that these maps should not be used for precision cosmological analysis. The maps are part of ACT DR5, and are available on LAMBDA at https://lambda.gsfc.nasa.gov/product/act/actpol_prod_table.cfm. There is also a web atlas at https://phy-act1.princeton.edu/public/snaess/actpol/dr5/atlas.

astro-ph.IM↗

Partially Constrained Internal Linear Combination: a method for low-noise CMB foreground mitigation

Internal Linear Combination (ILC) methods are some of the most widely used multi-frequency cleaning techniques employed in CMB data analysis. These methods reduce foregrounds by minimizing the total variance in the coadded map (subject to a signal-preservation constraint), although often significant foreground residuals or biases remain. A modification to the ILC method is the constrained ILC (cILC), which explicitly nulls certain foreground components; however, this foreground nulling often comes at a high price for ground-based CMB datasets, with the map noise increasing significantly on small scales. In this paper we explore a new method, the partially constrained ILC (pcILC), which allows us to optimize the tradeoff between foreground bias and variance in ILC methods. In particular, this method allows us to minimize the variance subject to an inequality constraint requiring that the constrained foregrounds are reduced by at least a fixed factor, which can be chosen based on the foreground sensitivity of the intended application. We test our method on simulated sky maps for a Simons Observatory-like experiment; we find that for cleaning thermal Sunyaev-Zel'dovich (tSZ) contamination at $\ell \in [3000,4800]$, if a small tSZ residual of 20% of the standard ILC residual can be tolerated, the variance of the CMB temperature map is reduced by at least 50% over the cILC value. We also demonstrate an application of this method to reduce noise in CMB lensing reconstruction.

astro-ph.CO↗

The Atacama Cosmology Telescope: DR4 Maps and Cosmological Parameters

We present new arcminute-resolution maps of the Cosmic Microwave Background temperature and polarization anisotropy from the Atacama Cosmology Telescope, using data taken from 2013-2016 at 98 and 150 GHz. The maps cover more than 17,000 deg$^2$, the deepest 600 deg$^2$ with noise levels below 10 $μ$K-arcmin. We use the power spectrum derived from almost 6,000 deg$^2$ of these maps to constrain cosmology. The ACT data enable a measurement of the angular scale of features in both the divergence-like polarization and the temperature anisotropy, tracing both the velocity and density at last-scattering. From these one can derive the distance to the last-scattering surface and thus infer the local expansion rate, $H_0$. By combining ACT data with large-scale information from WMAP we measure $H_0 = 67.6 \pm 1.1$ km/s/Mpc, at 68% confidence, in excellent agreement with the independently-measured Planck satellite estimate (from ACT alone we find $H_0 = 67.9 \pm 1.5$ km/s/Mpc). The $Λ$CDM model provides a good fit to the ACT data, and we find no evidence for deviations: both the spatial curvature, and the departure from the standard lensing signal in the spectrum, are zero to within 1$σ$; the number of relativistic species, the primordial Helium fraction, and the running of the spectral index are consistent with $Λ$CDM predictions to within $1.5 - 2.2σ$. We compare ACT, WMAP, and Planck at the parameter level and find good consistency; we investigate how the constraints on the correlated spectral index and baryon density parameters readjust when adding CMB large-scale information that ACT does not measure. The DR4 products presented here will be publicly released on the NASA Legacy Archive for Microwave Background Data Analysis.

astro-ph.CO↗

Strong detection of the CMB lensingxgalaxy weak lensingcross-correlation from ACT-DR4,PlanckLegacy and KiDS-1000

We measure the cross-correlation between galaxy weak lensing data from the Kilo Degree Survey (KiDS-1000, DR4) and cosmic microwave background (CMB) lensing data from the Atacama Cosmology Telescope (ACT, DR4) and the Planck Legacy survey. We use two samples of source galaxies, selected with photometric redshifts, $(0.1<z_{\rm B}<1.2)$ and $(1.2<z_{\rm B}<2)$, which produce a combined detection significance of the CMB lensing/weak galaxy lensing cross-spectrum of $7.7σ$. With the lower redshift galaxy sample, for which the cross-correlation is detected at a significance of $5.3σ$, we present joint cosmological constraints on the matter density parameter, $Ω_{\rm m}$, and the matter fluctuation amplitude parameter, $σ_8$, marginalising over three nuisance parameters that model our uncertainty in the redshift and shear calibration, and the intrinsic alignment of galaxies. We find our measurement to be consistent with the best-fitting flat $Λ$CDM cosmological models from both Planck and KiDS-1000. We demonstrate the capacity of CMB-weak lensing cross-correlations to set constraints on either the redshift or shear calibration, by analysing a previously unused high-redshift KiDS galaxy sample $(1.2<z_{\rm B}<2)$, with the cross-correlation detected at a significance of $7σ$. This analysis provides an independent assessment for the accuracy of redshift measurements in a regime that is challenging to calibrate directly owing to known incompleteness in spectroscopic surveys.

astro-ph.CO↗

The Atacama Cosmology Telescope: A Measurement of the Cosmic Microwave Background Power Spectra at 98 and 150 GHz

We present the temperature and polarization angular power spectra of the CMB measured by the Atacama Cosmology Telescope (ACT) from 5400 deg$^2$ of the 2013-2016 survey, which covers $>$15000 deg$^2$ at 98 and 150 GHz. For this analysis we adopt a blinding strategy to help avoid confirmation bias and, related to this, show numerous checks for systematic error done before unblinding. Using the likelihood for the cosmological analysis we constrain secondary sources of anisotropy and foreground emission, and derive a "CMB-only" spectrum that extends to $\ell=4000$. At large angular scales, foreground emission at 150 GHz is $\sim$1% of TT and EE within our selected regions and consistent with that found by Planck. Using the same likelihood, we obtain the cosmological parameters for $Λ$CDM for the ACT data alone with a prior on the optical depth of $τ=0.065\pm0.015$. $Λ$CDM is a good fit. The best-fit model has a reduced $χ^2$ of 1.07 (PTE=0.07) with $H_0=67.9\pm1.5$ km/s/Mpc. We show that the lensing BB signal is consistent with $Λ$CDM and limit the celestial EB polarization angle to $ψ_P =-0.07^{\circ}\pm0.09^{\circ}$. We directly cross correlate ACT with Planck and observe generally good agreement but with some discrepancies in TE. All data on which this analysis is based will be publicly released.

astro-ph.CO↗

The Atacama Cosmology Telescope: Delensed Power Spectra and Parameters

We present LCDM cosmological parameter constraints obtained from delensed microwave background power spectra. Lensing maps from a subset of DR4 data from the Atacama Cosmology Telescope (ACT) are used to undo the lensing effect in ACT spectra observed at 150 and 98 GHz. At 150 GHz, we remove the lensing distortion with an effective efficiency of 30% (TT), 30% (EE), 26% (TE) and 20% (BB); this results in detections of the delensing effect at 8.7 sigma (TT), 5.1 sigma (EE), 2.6 sigma (TE), and 2.4 sigma (BB) significance. The combination of 150 and 98 GHz TT, EE, and TE delensed spectra is well fit by a standard LCDM model. We also measure the shift in best-fit parameters when fitting delensed versus lensed spectra; while this shift does not inform our ability to measure cosmological parameters, it does provide a three-way consistency check among the lensing inferred from the best-fit parameters, the lensing in the CMB power spectrum, and the reconstructed lensing map. This shift is predicted to be zero when fitting with the correct model since both lensed and delensed spectra originate from the same region of sky. Fitting with a LCDM model and marginalizing over foregrounds, we find that the shift in cosmological parameters is consistent with zero. Our results show that gravitational lensing of the microwave background is internally consistent within the framework of the standard cosmological model.

astro-ph.CO↗

The Atacama Cosmology Telescope: Component-separated maps of CMB temperature and the thermal Sunyaev-Zel'dovich effect

Optimal analyses of many signals in the cosmic microwave background (CMB) require map-level extraction of individual components in the microwave sky, rather than measurements at the power spectrum level alone. To date, nearly all map-level component separation in CMB analyses has been performed exclusively using satellite data. In this paper, we implement a component separation method based on the internal linear combination (ILC) approach which we have designed to optimally account for the anisotropic noise (in the 2D Fourier domain) often found in ground-based CMB experiments. Using this method, we combine multi-frequency data from the Planck satellite and the Atacama Cosmology Telescope Polarimeter (ACTPol) to construct the first wide-area, arcminute-resolution component-separated maps (covering approximately 2100 sq. deg.) of the CMB temperature anisotropy and the thermal Sunyaev-Zel'dovich (tSZ) effect sourced by the inverse-Compton scattering of CMB photons off hot, ionized gas. Our ILC pipeline allows for explicit deprojection of various contaminating signals, including a modified blackbody approximation of the cosmic infrared background (CIB) spectral energy distribution. The cleaned CMB maps will be a useful resource for CMB lensing reconstruction, kinematic SZ cross-correlations, and primordial non-Gaussianity studies. The tSZ maps will be used to study the pressure profiles of galaxies, groups, and clusters through cross-correlations with halo catalogs, with dust contamination controlled via CIB deprojection. The data products described in this paper are available on LAMBDA.

astro-ph.CO↗

Density reconstruction from biased tracers and its application to primordial non-Gaussianity

Large-scale Fourier modes of the cosmic density field are of great value for learning about cosmology because of their well-understood relationship to fluctuations in the early universe. However, cosmic variance generally limits the statistical precision that can be achieved when constraining model parameters using these modes as measured in galaxy surveys, and moreover, these modes are sometimes inaccessible due to observational systematics or foregrounds. For some applications, both limitations can be circumvented by reconstructing large-scale modes using the correlations they induce between smaller-scale modes of an observed tracer (such as galaxy positions). In this paper, we further develop a formalism for this reconstruction, using a quadratic estimator similar to the one used for lensing of the cosmic microwave background. We incorporate nonlinearities from gravity, nonlinear biasing, and local-type primordial non-Gaussianity, and verify that the estimator gives the expected results when applied to N-body simulations. We then carry out forecasts for several upcoming surveys, demonstrating that, when reconstructed modes are included alongside directly-observed tracer density modes, constraints on local primordial non-Gaussianity are generically tightened by tens of percents compared to standard single-tracer analyses. In certain cases, these improvements arise from cosmic variance cancellation, with reconstructed modes taking the place of modes of a separate tracer, thus enabling an effective "multitracer" approach with single-tracer observations.

astro-ph.CO↗

The Atacama Cosmology Telescope: Constraints on Cosmic Birefringence

We present new constraints on anisotropic birefringence of the cosmic microwave background polarization using two seasons of data from the Atacama Cosmology Telescope covering $456$ square degrees of sky. The birefringence power spectrum, measured using a curved-sky quadratic estimator, is consistent with zero. Our results provide the tightest current constraint on birefringence over a range of angular scales between $5$ arcminutes and $9$ degrees. We improve previous upper limits on the amplitude of a scale-invariant birefringence power spectrum by a factor of between $2$ and $3$. Assuming a nearly-massless axion field during inflation, our result is equivalent to a $2\,σ$ upper limit on the Chern-Simons coupling constant between axions and photons of $g_{αγ}<4.0\times 10^{-2}/H_I$ where $H_I$ is the inflationary Hubble scale.

astro-ph.CO↗

The Atacama Cosmology Telescope: A CMB lensing mass map over 2100 square degrees of sky and its cross-correlation with BOSS-CMASS galaxies

We construct cosmic microwave background lensing mass maps using data from the 2014 and 2015 seasons of observations with the Atacama Cosmology Telescope (ACT). These maps cover 2100 square degrees of sky and overlap with a wide variety of optical surveys. The maps are signal dominated on large scales and have fidelity such that their correlation with the cosmic infrared background is clearly visible by eye. We also create lensing maps with thermal Sunyaev-Zel'dovich contamination removed using a novel cleaning procedure that only slightly degrades the lensing signal-to-noise ratio. The cross-spectrum between the cleaned lensing map and the BOSS CMASS galaxy sample is detected at $10$-$σ$ significance, with an amplitude of $A=1.02 \pm 0.10$ relative to the Planck best-fit LCDM cosmological model with fiducial linear galaxy bias. Our measurement lays the foundation for lensing cross-correlation science with current ACT data and beyond.

astro-ph.CO↗

Deep Bayesian Recurrent Neural Networks for Somatic Variant Calling in Cancer

The emerging field of precision oncology relies on the accurate pinpointing of alterations in the molecular profile of a tumor to provide personalized targeted treatments. Current methodologies in the field commonly include the application of next generation sequencing technologies to a tumor sample, followed by the identification of mutations in the DNA known as somatic variants. The differentiation of these variants from sequencing error poses a classic classification problem, which has traditionally been approached with Bayesian statistics, and more recently with supervised machine learning methods such as neural networks. Although these methods provide greater accuracy, classic neural networks lack the ability to indicate the confidence of a variant call. In this paper, we explore the performance of deep Bayesian neural networks on next generation sequencing data, and their ability to give probability estimates for somatic variant calls. In addition to demonstrating similar performance in comparison to standard neural networks, we show that the resultant output probabilities make these better suited to the disparate and highly-variable sequencing data-sets these models are likely to encounter in the real world. We aim to deliver algorithms to oncologists for which model certainty better reflects accuracy, for improved clinical application. By moving away from point estimates to reliable confidence intervals, we expect the resultant clinical and treatment decisions to be more robust and more informed by the underlying reality of the tumor molecular profile.

cs.LG↗

Safety and Robustness in Decision Making: Deep Bayesian Recurrent Neural Networks for Somatic Variant Calling in Cancer

The genomic profile underlying an individual tumor can be highly informative in the creation of a personalized cancer treatment strategy for a given patient; a practice known as precision oncology. This involves next generation sequencing of a tumor sample and the subsequent identification of genomic aberrations, such as somatic mutations, to provide potential candidates of targeted therapy. The identification of these aberrations from sequencing noise and germline variant background poses a classic classification-style problem. This has been previously broached with many different supervised machine learning methods, including deep-learning neural networks. However, these neural networks have thus far not been tailored to give any indication of confidence in the mutation call, meaning an oncologist could be targeting a mutation with a low probability of being true. To address this, we present here a deep bayesian recurrent neural network for cancer variant calling, which shows no degradation in performance compared to standard neural networks. This approach enables greater flexibility through different priors to avoid overfitting to a single dataset. We will be incorporating this approach into software for oncologists to obtain safe, robust, and statistically confident somatic mutation calls for precision oncology treatment choices.

cs.LG↗

Science from an Ultra-Deep, High-Resolution Millimeter-Wave Survey

Opening up a new window of millimeter-wave observations that span frequency bands in the range of 30 to 500 GHz, survey half the sky, and are both an order of magnitude deeper (about 0.5 uK-arcmin) and of higher-resolution (about 10 arcseconds) than currently funded surveys would yield an enormous gain in understanding of both fundamental physics and astrophysics. In particular, such a survey would allow for major advances in measuring the distribution of dark matter and gas on small-scales, and yield needed insight on 1.) dark matter particle properties, 2.) the evolution of gas and galaxies, 3.) new light particle species, 4.) the epoch of inflation, and 5.) the census of bodies orbiting in the outer Solar System.

astro-ph.CO↗

Improved Balanced Flow Computation Using Parametric Flow

We present a new algorithm for computing balanced flows in equality networks arising in market equilibrium computations. The current best time bound for computing balanced flows in such networks requires $O(n)$ maxflow computations, where $n$ is the number of nodes in the network [Devanur et al. 2008]. Our algorithm requires only a single parametric flow computation. The best algorithm for computing parametric flows [Gallo et al. 1989] is only by a logarithmic factor slower than the best algorithms for computing maxflows. Hence, the running time of the algorithms in [Devanur et al. 2008] and [Duan and Mehlhorn 2015] for computing market equilibria in linear Fisher and Arrow-Debreu markets improve by almost a factor of $n$.

cs.DS↗

Memory-Adjustable Navigation Piles with Applications to Sorting and Convex Hulls

We consider space-bounded computations on a random-access machine (RAM) where the input is given on a read-only random-access medium, the output is to be produced to a write-only sequential-access medium, and the available workspace allows random reads and writes but is of limited capacity. The length of the input is $N$ elements, the length of the output is limited by the computation, and the capacity of the workspace is $O(S)$ bits for some predetermined parameter $S$. We present a state-of-the-art priority queue---called an adjustable navigation pile---for this restricted RAM model. Under some reasonable assumptions, our priority queue supports $\mathit{minimum}$ and $\mathit{insert}$ in $O(1)$ worst-case time and $\mathit{extract}$ in $O(N/S + \lg{} S)$ worst-case time for any $S \geq \lg{} N$. We show how to use this data structure to sort $N$ elements and to compute the convex hull of $N$ points in the two-dimensional Euclidean space in $O(N^2/S + N \lg{} S)$ worst-case time for any $S \geq \lg{} N$. Following a known lower bound for the space-time product of any branching program for finding unique elements, both our sorting and convex-hull algorithms are optimal. The adjustable navigation pile has turned out to be useful when designing other space-efficient algorithms, and we expect that it will find its way to yet other applications.

cs.DS↗