arXiv subjects

Oren Weimann

Publications and source records attributed to Oren Weimann.

At least 37 records · Page 2Linked to original sources

arXiv2019

Compressed Range Minimum Queries

Given a string $S$ of $n$ integers in $[0,σ)$, a range minimum query RMQ$(i, j)$ asks for the index of the smallest integer in $S[i \dots j]$. It is well known that the problem can be solved with a succinct data structure of size $2n + o(n)$ and constant query-time. In this paper we show how to preprocess $S$ into a compressed representation that allows fast range minimum queries. This allows for sublinear size data structures with logarithmic query time. The most natural approach is to use string compression and construct a data structure for answering range minimum queries directly on the compressed string. We investigate this approach in the context of grammar compression. We then consider an alternative approach. Instead of compressing $S$ using string compression, we compress the Cartesian tree of $S$ using tree compression. We show that this approach can be exponentially better than the former, is never worse by more than an $O(σ)$ factor (i.e. for constant alphabets it is never asymptotically worse), and can in fact be worse by an $Ω(σ)$ factor.

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arXiv2018

Almost Optimal Distance Oracles for Planar Graphs

We present new tradeoffs between space and query-time for exact distance oracles in directed weighted planar graphs. These tradeoffs are almost optimal in the sense that they are within polylogarithmic, sub-polynomial or arbitrarily small polynomial factors from the na\"ıve linear space, constant query-time lower bound. These tradeoffs include: (i) an oracle with space $\tilde{O}(n^{1+ε})$ and query-time $\tilde{O}(1)$ for any constant $ε>0$, (ii) an oracle with space $\tilde{O}(n)$ and query-time $\tilde{O}(n^ε)$ for any constant $ε>0$, and (iii) an oracle with space $n^{1+o(1)}$ and query-time $n^{o(1)}$.

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arXiv2018

Near-Optimal Distance Emulator for Planar Graphs

Given a graph $G$ and a set of terminals $T$, a \emph{distance emulator} of $G$ is another graph $H$ (not necessarily a subgraph of $G$) containing $T$, such that all the pairwise distances in $G$ between vertices of $T$ are preserved in $H$. An important open question is to find the smallest possible distance emulator. We prove that, given any subset of $k$ terminals in an $n$-vertex undirected unweighted planar graph, we can construct in $\tilde O(n)$ time a distance emulator of size $\tilde O(\min(k^2,\sqrt{k\cdot n}))$. This is optimal up to logarithmic factors. The existence of such distance emulator provides a straightforward framework to solve distance-related problems on planar graphs: Replace the input graph with the distance emulator, and apply whatever algorithm available to the resulting emulator. In particular, our result implies that, on any unweighted undirected planar graph, one can compute all-pairs shortest path distances among $k$ terminals in $\tilde O(n)$ time when $k=O(n^{1/3})$.

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arXiv2018

A Faster FPTAS for #Knapsack

Given a set $W = \{w_1,\ldots, w_n\}$ of non-negative integer weights and an integer $C$, the #Knapsack problem asks to count the number of distinct subsets of $W$ whose total weight is at most $C$. In the more general integer version of the problem, the subsets are multisets. That is, we are also given a set $ \{u_1,\ldots, u_n\}$ and we are allowed to take up to $u_i$ items of weight $w_i$. We present a deterministic FPTAS for #Knapsack running in $O(n^{2.5}\varepsilon^{-1.5}\log(n \varepsilon^{-1})\log (n \varepsilon))$ time. The previous best deterministic algorithm [FOCS 2011] runs in $O(n^3 \varepsilon^{-1} \log(n\varepsilon^{-1}))$ time (see also [ESA 2014] for a logarithmic factor improvement). The previous best randomized algorithm [STOC 2003] runs in $O(n^{2.5} \sqrt{\log (n\varepsilon^{-1}) } + \varepsilon^{-2} n^2 )$ time. Therefore, in the natural setting of constant $\varepsilon$, we close the gap between the $\tilde O(n^{2.5})$ randomized algorithm and the $\tilde O(n^3)$ deterministic algorithm. For the integer version with $U = \max_i \{u_i\}$, we present a deterministic FPTAS running in $O(n^{2.5}\varepsilon^{-1.5}\log(n\varepsilon^{-1} \log U)\log (n \varepsilon) \log^2 U)$ time. The previous best deterministic algorithm [APPROX 2016] runs in $O(n^3\varepsilon^{-1}\log(n \varepsilon^{-1} \log U) \log^2 U)$ time.

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arXiv2017

Submatrix Maximum Queries in Monge Matrices are Equivalent to Predecessor Search

We present an optimal data structure for submatrix maximum queries in n x n Monge matrices. Our result is a two-way reduction showing that the problem is equivalent to the classical predecessor problem in a universe of polynomial size. This gives a data structure of O(n) space that answers submatrix maximum queries in O(loglogn) time. It also gives a matching lower bound, showing that O(loglogn) query-time is optimal for any data structure of size O(n polylog(n)). Our result concludes a line of improvements that started in SODA'12 with O(log^2 n) query-time and continued in ICALP'14 with O(log n) query-time. Finally, we show that partial Monge matrices can be handled in the same bounds as full Monge matrices. In both previous results, partial Monge matrices incurred additional inverse-Ackerman factors.

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arXiv2017

Improved Submatrix Maximum Queries in Monge Matrices

We present efficient data structures for submatrix maximum queries in Monge matrices and Monge partial matrices. For $n\times n$ Monge matrices, we give a data structure that requires O(n) space and answers submatrix maximum queries in $O(\log n)$ time. The best previous data structure [Kaplan et al., SODA`12] required $O(n \log n)$ space and $O(\log^2 n)$ query time. We also give an alternative data structure with constant query-time and $ O(n^{1+\varepsilon})$ construction time and space for any fixed $\varepsilon<1$. For $n\times n$ {\em partial} Monge matrices we obtain a data structure with O(n) space and $O(\log n \cdot α(n))$ query time. The data structure of Kaplan et al. required $O(n \log n \cdot α(n))$ space and $O(\log^2 n)$ query time. Our improvements are enabled by a technique for exploiting the structure of the upper envelope of Monge matrices to efficiently report column maxima in skewed rectangular Monge matrices. We hope this technique can be useful in obtaining faster search algorithms in Monge partial matrices. In addition, we give a linear upper bound on the number of breakpoints in the upper envelope of a Monge partial matrix. This shows that the inverse Ackermann $α(n)$ term in the analysis of the data structure of Kaplan et. al is superfluous.

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arXiv2017

Better Tradeoffs for Exact Distance Oracles in Planar Graphs

We present an $O(n^{1.5})$-space distance oracle for directed planar graphs that answers distance queries in $O(\log n)$ time. Our oracle both significantly simplifies and significantly improves the recent oracle of Cohen-Addad, Dahlgaard and Wulff-Nilsen [FOCS 2017], which uses $O(n^{5/3})$-space and answers queries in $O(\log n)$ time. We achieve this by designing an elegant and efficient point location data structure for Voronoi diagrams on planar graphs. We further show a smooth tradeoff between space and query-time. For any $S\in [n,n^2]$, we show an oracle of size $S$ that answers queries in $\tilde O(\max\{1,n^{1.5}/S\})$ time. This new tradeoff is currently the best (up to polylogarithmic factors) for the entire range of $S$ and improves by polynomial factors over all the previously known tradeoffs for the range $S \in [n,n^{5/3}]$.

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arXiv2017

A Faster Construction of Greedy Consensus Trees

A consensus tree is a phylogenetic tree that captures the similarity between a set of conflicting phylogenetic trees. The problem of computing a consensus tree is a major step in phylogenetic tree reconstruction. It also finds applications in predicting a species tree from a set of gene trees. This paper focuses on two of the most well-known and widely used oconsensus tree methods: the greedy consensus tree and the frequency difference consensus tree. Given $k$ conflicting trees each with $n$ leaves, the previous fastest algorithms for these problems were $O(k n^2)$ for the greedy consensus tree [J. ACM 2016] and $\tilde O(\min \{ k n^2, k^2n\})$ for the frequency difference consensus tree [ACM TCBB 2016]. We improve these running times to $\tilde O(k n^{1.5})$ and $\tilde O(k n)$ respectively.

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arXiv2017

Dispersion on Trees

In the $k$-dispersion problem, we need to select $k$ nodes of a given graph so as to maximize the minimum distance between any two chosen nodes. This can be seen as a generalization of the independent set problem, where the goal is to select nodes so that the minimum distance is larger than 1. We design an optimal $O(n)$ time algorithm for the dispersion problem on trees consisting of $n$ nodes, thus improving the previous $O(n\log n)$ time solution from 1997. We also consider the weighted case, where the goal is to choose a set of nodes of total weight at least $W$. We present an $O(n\log^2n)$ algorithm improving the previous $O(n\log^4 n)$ solution. Our solution builds on the search version (where we know the minimum distance $λ$ between the chosen nodes) for which we present tight $Θ(n\log n)$ upper and lower bounds.

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arXiv2017

Optimal Distance Labeling Schemes for Trees

Labeling schemes seek to assign a short label to each node in a network, so that a function on two nodes can be computed by examining their labels alone. For the particular case of trees, optimal bounds (up to low order terms) were recently obtained for adjacency labeling [FOCS'15], nearest common ancestor labeling [SODA'14], and ancestry labeling [SICOMP'06]. In this paper we obtain optimal bounds for distance labeling. We present labels of size $1/4\log^2n+o(\log^2n)$, matching (up to low order terms) the recent $1/4\log^2n-O(\log n)$ lower bound [ICALP'16]. Prior to our work, all distance labeling schemes for trees could be reinterpreted as universal trees. A tree $T$ is said to be universal if any tree on $n$ nodes can be found as a subtree of $T$. A universal tree with $|T|$ nodes implies a distance labeling scheme with label size $\log |T|$. In 1981, Chung et al. proved that any distance labeling scheme based on universal trees requires labels of size $1/2\log^2 n-\log n\cdot\log\log n+O(\log n)$. Our scheme is the first to break this lower bound, showing a separation between distance labeling and universal trees. The $Θ(\log^2 n)$ barrier has led researchers to consider distances bounded by $k$. The size of such labels was improved from $\log n+O(k\sqrt{\log n})$ [WADS'01] to $\log n+O(k^2(\log(k\log n))$ [SODA'03] and then to $\log n+O(k\log(k\log(n/k)))$ [PODC'07]. We show how to construct labels whose size is $\min\{\log n+O(k\log((\log n)/k)),O(\log n\cdot\log(k/\log n))\}$. We complement this with almost tight lower bounds of $\log n+Ω(k\log(\log n/(k\log k)))$ and $Ω(\log n\cdot\log(k/\log n))$. Finally, we consider $(1+\varepsilon)$-approximate distances. We show that the labeling scheme of [ICALP'16] can be easily modified to obtain an $O(\log(1/\varepsilon)\cdot\log n)$ upper bound and we prove a $Ω(\log(1/\varepsilon)\cdot\log n)$ lower bound.

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arXiv2017

Tree Edit Distance Cannot be Computed in Strongly Subcubic Time (unless APSP can)

The edit distance between two rooted ordered trees with $n$ nodes labeled from an alphabet~$Σ$ is the minimum cost of transforming one tree into the other by a sequence of elementary operations consisting of deleting and relabeling existing nodes, as well as inserting new nodes. Tree edit distance is a well known generalization of string edit distance. The fastest known algorithm for tree edit distance runs in cubic $O(n^3)$ time and is based on a similar dynamic programming solution as string edit distance. In this paper we show that a truly subcubic $O(n^{3-\varepsilon})$ time algorithm for tree edit distance is unlikely: For $|Σ| = Ω(n)$, a truly subcubic algorithm for tree edit distance implies a truly subcubic algorithm for the all pairs shortest paths problem. For $|Σ| = O(1)$, a truly subcubic algorithm for tree edit distance implies an $O(n^{k-\varepsilon})$ algorithm for finding a maximum weight $k$-clique. Thus, while in terms of upper bounds string edit distance and tree edit distance are highly related, in terms of lower bounds string edit distance exhibits the hardness of the strong exponential time hypothesis [Backurs, Indyk STOC'15] whereas tree edit distance exhibits the hardness of all pairs shortest paths. Our result provides a matching conditional lower bound for one of the last remaining classic dynamic programming problems.

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arXiv2017

Near-Optimal Compression for the Planar Graph Metric

The Planar Graph Metric Compression Problem is to compactly encode the distances among $k$ nodes in a planar graph of size $n$. Two naïve solutions are to store the graph using $O(n)$ bits, or to explicitly store the distance matrix with $O(k^2 \log{n})$ bits. The only lower bounds are from the seminal work of Gavoille, Peleg, Prennes, and Raz [SODA'01], who rule out compressions into a polynomially smaller number of bits, for {\em weighted} planar graphs, but leave a large gap for unweighted planar graphs. For example, when $k=\sqrt{n}$, the upper bound is $O(n)$ and their constructions imply an $Ω(n^{3/4})$ lower bound. This gap is directly related to other major open questions in labelling schemes, dynamic algorithms, and compact routing. Our main result is a new compression of the planar graph metric into $\tilde{O}(\min (k^2 , \sqrt{k\cdot n}))$ bits, which is optimal up to log factors. Our data structure breaks an $Ω(k^2)$ lower bound of Krauthgamer, Nguyen, and Zondiner [SICOMP'14] for compression using minors, and the lower bound of Gavoille et al. for compression of weighted planar graphs. This is an unexpected and decisive proof that weights can make planar graphs inherently more complex. Moreover, we design a new {\em Subset Distance Oracle} for planar graphs with $\tilde O(\sqrt{k\cdot n})$ space, and $\tilde O(n^{3/4})$ query time. Our work carries strong messages to related fields. In particular, the famous $O(n^{1/2})$ vs. $Ω(n^{1/3})$ gap for distance labelling schemes in planar graphs {\em cannot} be resolved with the current lower bound techniques.

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arXiv2016

Minimum Cut of Directed Planar Graphs in O(nloglogn) Time

We give an $O(n \log \log n)$ time algorithm for computing the minimum cut (or equivalently, the shortest cycle) of a weighted directed planar graph. This improves the previous fastest $O(n\log^3 n)$ solution. Interestingly, while in undirected planar graphs both min-cut and min $st$-cut have $O(n \log \log n)$ solutions, in directed planar graphs our result makes min-cut faster than min $st$-cut, which currently requires $O(n \log n)$.

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arXiv2015

Longest Common Extensions in Trees

The longest common extension (LCE) of two indices in a string is the length of the longest identical substrings starting at these two indices. The LCE problem asks to preprocess a string into a compact data structure that supports fast LCE queries. In this paper we generalize the LCE problem to trees and suggest a few applications of LCE in trees to tries and XML databases. Given a labeled and rooted tree $T$ of size $n$, the goal is to preprocess $T$ into a compact data structure that support the following LCE queries between subpaths and subtrees in $T$. Let $v_1$, $v_2$, $w_1$, and $w_2$ be nodes of $T$ such that $w_1$ and $w_2$ are descendants of $v_1$ and $v_2$ respectively. \begin{itemize} \item $\LCEPP(v_1, w_1, v_2, w_2)$: (path-path $\LCE$) return the longest common prefix of the paths $v_1 \leadsto w_1$ and $v_2 \leadsto w_2$. \item $\LCEPT(v_1, w_1, v_2)$: (path-tree $\LCE$) return maximal path-path LCE of the path $v_1 \leadsto w_1$ and any path from $v_2$ to a descendant leaf. \item $\LCETT(v_1, v_2)$: (tree-tree $\LCE$) return a maximal path-path LCE of any pair of paths from $v_1$ and $v_2$ to descendant leaves. \end{itemize} We present the first non-trivial bounds for supporting these queries. For $\LCEPP$ queries, we present a linear-space solution with $O(\log^{*} n)$ query time. For $\LCEPT$ queries, we present a linear-space solution with $O((\log\log n)^{2})$ query time, and complement this with a lower bound showing that any path-tree LCE structure of size $O(n \polylog(n))$ must necessarily use $Ω(\log\log n)$ time to answer queries. For $\LCETT$ queries, we present a time-space trade-off, that given any parameter $τ$, $1 \leq τ\leq n$, leads to an $O(nτ)$ space and $O(n/τ)$ query-time solution. This is complemented with a reduction to the the set intersection problem implying that a fast linear space solution is not likely to exist.

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arXiv2014

Binary Jumbled Pattern Matching via All-Pairs Shortest Paths

In binary jumbled pattern matching we wish to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of size $i$ and has exactly $j$ 1-bits. The problem naturally generalizes to node-labeled trees and graphs by replacing "substring" with "connected subgraph". In this paper, we give an ${n^2}/{2^{Ω(\log n/\log \log n)^{1/2}}}$ time solution for both strings and trees. This odd-looking time complexity improves the state of the art $O(n^2/\log^2 n)$ solutions by more than any poly-logarithmic factor. It originates from the recent seminal algorithm of Williams for min-plus matrix multiplication. We obtain the result by giving a black box reduction from trees to strings. This is then combined with a reduction from strings to min-plus matrix multiplications.

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arXiv2014

Binary Jumbled Pattern Matching on Trees and Tree-Like Structures

Binary jumbled pattern matching asks to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of length $i$ and has exactly $j$ 1-bits. This problem naturally generalizes to vertex-labeled trees and graphs by replacing "substring" with "connected subgraph". In this paper, we give an $O(n^2 / \log^2 n)$-time solution for trees, matching the currently best bound for (the simpler problem of) strings. We also give an $\Oh{g^{2 / 3} n^{4 / 3}/(\log n)^{4/3}}$-time solution for strings that are compressed by a grammar of size $g$. This solution improves the known bounds when the string is compressible under many popular compression schemes. Finally, we prove that the problem is fixed-parameter tractable with respect to the treewidth $w$ of the graph, thus improving the previous best $n^{O(w)}$ algorithm [ICALP'07].

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arXiv2014

Tree Compression with Top Trees

We introduce a new compression scheme for labeled trees based on top trees. Our compression scheme is the first to simultaneously take advantage of internal repeats in the tree (as opposed to the classical DAG compression that only exploits rooted subtree repeats) while also supporting fast navigational queries directly on the compressed representation. We show that the new compression scheme achieves close to optimal worst-case compression, can compress exponentially better than DAG compression, is never much worse than DAG compression, and supports navigational queries in logarithmic time.

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arXiv2014

Faster Shortest Paths in Dense Distance Graphs, with Applications

We show how to combine two techniques for efficiently computing shortest paths in directed planar graphs. The first is the linear-time shortest-path algorithm of Henzinger, Klein, Subramanian, and Rao [STOC'94]. The second is Fakcharoenphol and Rao's algorithm [FOCS'01] for emulating Dijkstra's algorithm on the dense distance graph (DDG). A DDG is defined for a decomposition of a planar graph $G$ into regions of at most $r$ vertices each, for some parameter $r < n$. The vertex set of the DDG is the set of $Θ(n/\sqrt r)$ vertices of $G$ that belong to more than one region (boundary vertices). The DDG has $Θ(n)$ arcs, such that distances in the DDG are equal to the distances in $G$. Fakcharoenphol and Rao's implementation of Dijkstra's algorithm on the DDG (nicknamed FR-Dijkstra) runs in $O(n\log(n) r^{-1/2} \log r)$ time, and is a key component in many state-of-the-art planar graph algorithms for shortest paths, minimum cuts, and maximum flows. By combining these two techniques we remove the $\log n$ dependency in the running time of the shortest-path algorithm, making it $O(n r^{-1/2} \log^2r)$. This work is part of a research agenda that aims to develop new techniques that would lead to faster, possibly linear-time, algorithms for problems such as minimum-cut, maximum-flow, and shortest paths with negative arc lengths. As immediate applications, we show how to compute maximum flow in directed weighted planar graphs in $O(n \log p)$ time, where $p$ is the minimum number of edges on any path from the source to the sink. We also show how to compute any part of the DDG that corresponds to a region with $r$ vertices and $k$ boundary vertices in $O(r \log k)$ time, which is faster than has been previously known for small values of $k$.

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