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Ou-Yang Zhong-can

Publications and source records attributed to Ou-Yang Zhong-can.

14 recordsLinked to original sources

Study of axial strain induced torsion of single wall carbon nanotubes by 2D continuum anharmonic anisotropic elastic model

Recent molecular dynamic simulations have found chiral single wall carbon nanotubes (SWNTs) twist during stretching, which is similar to the motion of a screw. Obviously this phenomenon, as a type of curvature-chirality effect, can not be explained by usual isotropic elastic theory of SWNT. More interestingly, with larger axial strains (before buckling), the axial strain induced torsion (a-SIT) shows asymmetric behaviors for axial tensile and compressing strains, which suggests anharmonic elasticity of SWNTs plays an important role in real a-SIT responses. In order to study the a-SIT of chiral SWNTs with actual sizes, and avoid possible deviations of computer simulation results due to the finite-size effect, we propose a 2D analytical continuum model which can be used to describe the the SWNTs of arbitrary chiralities, curvatures, and lengths, with the concerning of anisotropic and anharmonic elasticity of SWNTs. This elastic energy of present model comes from the continuum limit of lattice energy based on Second Generation Reactive Empirical Bond Order potential (REBO-II), a well-established empirical potential for solid carbons. Our model has no adjustable parameters, except for those presented in REBO-II, and all the coefficients in the model can be calculated analytically. Using our method, we obtain a-SIT responses of chiral SWNTs with arbitrary radius, chiralities and lengthes. Our results are in reasonable agreement with recent molecular dynamic simulations. [Liang {\it et. al}, Phys. Rev. Lett, ${\bf 96}$, 165501 (2006).] Our approach can also be used to calculate other curvature-chirality dependent anharmonic mechanic responses of SWNTs.

cond-mat.mes-hall↗

Can Electric Field Induced Energy Gaps In Metallic Carbon Nanotubes?

The low-energy electronic structure of metallic single-walled carbon nanotube (SWNT) in an external electric field perpendicular to the tube axis is investigated. Based on tight-binding approximation, a field-induced energy gap is found in all (n, n) SWNTs, and the gap shows strong dependence on the electric field and the size of the tubes. We numerically find a universal scaling that the gap is a function of the electric field and the radius of SWNTs, and the results are testified by the second-order perturbation theory in weak field limit. Our calculation shows the field required to induce a 0.1 ${\rm eV}$ gap in metallic SWNTs can be easily reached under the current experimental conditions. It indicates a kind of possibility to apply nanotubes to electric signal-controlled nanoscale switching devices.

cond-mat.mes-hall↗

Large deformation of spherical vesicle studied by perturbation theory and Surface evolver

With tangent angle perturbation approach the axial symmetry deformation of a spherical vesicle in large under the pressure changes is studied by the elasticity theory of Helfrich spontaneous curvature model.Three main results in axial symmetry shape: biconcave shape, peanut shape, and one type of myelin are obtained. These axial symmetry morphology deformations are in agreement with those observed in lipsome experiments by dark-field light microscopy [Hotani, J. Mol. Biol. 178, (1984) 113] and in the red blood cell with two thin filaments (myelin) observed in living state (see, Bessis, Living Blood Cells and Their Ultrastructure, Springer-Verlag, 1973). Furthermore, the biconcave shape and peanut shape can be simulated with the help of a powerful software, Surface Evolver [Brakke, Exp. Math. 1, 141 (1992) 141], in which the spontaneous curvature can be easy taken into account.

physics.bio-ph↗

The structure relaxation of carbon nanotube

A simple macroscopic continuum elasticity theory (CET) is used to calculate the structure relaxation of single-wall carbon nanotube (SWNT), an analytic formula is obtained. We also expand an atomic scale three-parameter empirical model [ T. Lenosky {\emph et al.} Nature 355, 333(1992)] in order to correctly describe the bond-length change effects. The structure relaxation of SWNT expected by the model is good in agreement with our CET results, and very well consistent with the previous calculation from a first principles local density function approximation. Using the expanded Lenosky model, we calculate the strain energy of bending tube. The obtained results are good in agreement with the previous theoretical expectation. It shows the model may be a good simple replacement of some more sophisticated methods on determining carbon networks deformations.

cond-mat.mtrl-sci↗

The Polarizability and Electric Field-Induced Energy Gaps In Carbon Nanotubes

A simple method to calculate the static electric polarization of single-walled carbon nanotube (SWNT) is obtained within the second-order perturbation approximation. The results are in agreement with the previous calculation within the random-phase approximation. We also find that the low energy electronic band structure of SWNT can be affected by an external electric field perpendicular to the axis of the tube. The field-induced energy gap shows strong dependence on the electric field and the size of the tubes, and a metal-insulator transition is predicted for all $(n, n)$ tubes. Universal scaling is found for the gap as function of the electric field and the radius of SWNTs. The fact that the external field required to induce a 0.1 ${\rm eV}$ gap in SWNTs can be reached under the currently available experimental conditions indicates a possibility of further applying nanotubes to electric signal-controlled nanoscale switching devices.

cond-mat.mes-hall↗

The strain energy and Young's Moduli of single-wall Carbon nanotubules calculated from the electronic energy-band theory

The strain energies in straight and bent single-walled carbon nanotubes (SWNTs) are calculated by taking account of the total energy of all the occupied band electrons. The obtained results are in good agreement with previous theoretical studies and experimental observations. The Young's modulus and the effective wall thickness of SWNT are obtained from the bending strain energies of SWNTs with various cross-sectional radii. The repulsion potential between ions contributes the main part of the Young's modulus of SWNT. The wall thickness of SWNT comes completely from the overlap of electronic orbits, and is approximately of the extension of $π$ orbit of carbon atom. Both the Young's modulus and the wall thickness are independent of the radius and the helicity of SWNT, and insensitive to the fitting parameters. The results show that continuum elasticity theory can serve well to describe the mechanical properties of SWNTs.

cond-mat.mes-hall↗

Can pulling cause right- to left-handed structural transitions in negatively supercoiled DNA double-helix?

The folding angle distribution of stretched and negatively supercoiled DNA double-helix is investigated based on a theoretical model we proposed earlier [H. Zhou et al., Phys. Rev. Lett. 82, 4560 (1999)]. It is shown that pulling can transit a negatively supercoiled DNA double-helix from the right-handed B-form to a left-handed configuration which resembles DNA Z-form in some important respects. The energetics of this possible transition is calculated and the comparison with recent experimental observations are qualitatively discussed.

cond-mat.soft↗

Entropic Elasticity, Cooperative Extensibility and Supercoiling Property of DNA: A Unified Viewpoint

A unified model is constructed to study the recently observed DNA entropic elasticity, cooperative extensibility, and supercoiling property. With the introduction of a new structural parameter (the folding angle $ϕ$), bending deformations of sugar-phosphate backbones, steric effects of nucleotide basepairs, and short-range basestacking interactions are considered. The comprehensive agreement of theoretical results with experimental observations on both torsionally relaxed and negatively supercoiled DNAs strongly indicates that, basestacking interactions, although short-ranged in nature, dominate the elasticity of DNA and hence are of vital biological significance.

cond-mat.soft↗

Bending and Base-Stacking Interactions in Double-Stranded Semiflexible Polymer

Simple expressions for the bending and the base-stacking energy of double-stranded semiflexible biopolymers (such as DNA and actin) are derived. The distribution of the folding angle between the two strands is obtained by solving a Schrödinger equation variationally. Theoretical results based on this model on the extension versus force and extension versus degree of supercoiling relations of DNA chain are in good agreement with the experimental observations of Cluzel {\it et al.} [Science {\bf 271}, 792 (1996)], Smith {\it et al.} [{\it ibid.} {\bf 271}, 795 (1996)], and Strick {\it et al.} [{\it ibid.} {\bf 271}, 1835 (1996)].

cond-mat.soft↗

Spontaneous curvature-induced dynamical instability of Kirchhoff filaments: Application to DNA kink deformations

The Kirchhoff elastic theory of thin filaments with spontaneous curvature is employed in the understanding of the onset of the kink transitions observed in short DNA rings. Dynamical analysis shows that when its actual curvature is less than some threshold value determined by the spontaneous curvature, a circular DNA will begin to buckle to other shapes. The observable and the dominant deformation modes are also determined by dynamical instability analysis, and the different effects of Zn$^{2+}$ and Mg$^{2+}$ ions on DNA configurational properties are qualitatively discussed.

physics.bio-ph↗

Theory on quench-induced pattern formation: Application to the isotropic to smectic-A phase transitions

During catastrophic processes of environmental variations of a thermodynamic system, such as rapid temperature decreasing, many novel and complex patterns often form. To understand such phenomena, a general mechanism is proposed based on the competition between heat transfer and conversion of heat to other energy forms. We apply it to the smectic-A filament growth process during quench-induced isotropic to smectic-A phase transition. Analytical forms for the buckling patterns are derived and we find good agreement with experimental observation [Phys. Rev. {\bf E55} (1997) 1655]. The present work strongly indicates that rapid cooling will lead to structural transitions in the smectic-A filament at the molecular level to optimize heat conversion. The force associated with this pattern formation process is estimated to be in the order of $10^{-1}$ piconewton.

cond-mat.soft↗

Bending and Twisting Elasticity: a Revised Marko-Siggia Model on DNA Chirality

A revised Marko-Siggia elastic model for DNA double helix [Macromolecules 27, 981 (1994)] is proposed, which includes the WLC bending energy and a new chiral twisting energy term. It is predicted that the mean helical repeat length (HRL) for short DNA rings increases with the decreasing of chain length; while for very long chains, their mean HRL is the same, independent of both the chain length and whether the ends are closed, it is longer than the value for rectilinear DNAs. Our results are in good agreement with experiments.

cond-mat.soft↗

Instability and Periodic Deformation in Bilayer Membranes Induced by Freezing

The instability and periodic deformation of bilayer membranes during freezing processes are studied as a function of the difference of the shape energy between the high and the low temperature membrane states. It is shown that there exists a threshold stability condition, bellow which a planar configuration will be deformed. Among the deformed shapes, the periodic curved square textures are shown being one kind of the solutions of the associated shape equation. In consistency with recent expe rimental observations, the optimal ratio of period and amplitude for such a texture is found to be approximately equal to (2)^{1/2}π.

cond-mat.soft↗

Coil Formation in Multishell Carbon Nanotubes: Competition between Curvature Elasticity and Interlayer Adhesion

To study the shape formation process of carbon nanotubes, a string equation describing the possible existing shapes of the axis-curve of multishell carbon tubes (MCTs) is obtained in the continuum limit by minimizing the shape energy, that is the difference between the MCT energy and the energy of the carbonaceous mesophase (CM). It is shown that there exists a threshold relation of the outmost and inmost radii, that gives a parameter regime in which a straight MCT will be bent or twisted. Among the deformed shapes, the regular coiled MCTs are shown being one of the solutions of the string equation. In particular,the optimal ratio of pitch $p$ and radius $r_0$ for such a coil is found to be equal to $2π$, which is in good agreement with recent observation of coil formation in MCTs by Zhang et al.

cond-mat↗