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Owen Visser

Publications and source records attributed to Owen Visser.

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Estimating Association Between Paired Outcomes in Clustered Data with Informative Subgroup Size

Informative cluster size (ICS) and informative subgroup size (ISS) can distort marginal association estimates when the number of observed units, or their distribution across outcome-defined categories, is related to the outcomes under study. This issue is especially relevant for paired outcomes, where the observed association can depend on cluster size, paired-category composition, and the process by which units become available for analysis. We propose three weighted estimating approaches for marginal association between paired outcomes in clustered data. The weights are derived from within-cluster resampling arguments and extend inverse cluster-size and subgroup-size weighting to paired outcome categories. We also modify an existing ISS testing procedure by utilizing Stouffer's method to reduce computational burden. To evaluate the methods, we develop a simulator for clustered paired outcomes that separates unit-level association, latent cluster-level association, and outcome-dependent retention. Simulations show that pair-based weighting can reduce bias when association arises through unit-level dependence and subgroup composition is informative, but can attenuate association carried by latent cluster-level structure. Typical inverse-cluster weighting remains more stable when the association is primarily cluster-level. Application to NHANES oral-health data shows small positive periodontal and caries associations overall, with filled-surface outcomes showing stronger ISS evidence and greater sensitivity to pair-based weighting than decayed-surface outcomes. These results indicate that marginal association under ICS and ISS should be interpreted in relation to the source of association, observed-unit structure, and assumptions used to choose the weighting scheme.

stat.ME

Selection of single cell clustering methodologies through rank aggregation of multiple performance measures

As single-cell gene expression data analysis continues to grow, the need for reliable clustering methods has become increasingly important. The prevalence of heuristic means for method choice could lead to inaccurate reports if comprehensive evaluation of the methods is omitted. Typical comparisons of methods fail to address the complexity presented by the data, transformations, or internal parameters. Previous work in the field of microarray data provided measures to evaluate the stability characteristic of clustering algorithms. Additional work on aggregation in the same era presented a way to compare multiple methodologies using several performance measures. In this paper, we provide adaptations to these measures and employ two aggregation schemes to create ranked lists of method and parameter choices for six unique datasets. Our findings demonstrate that an ensemble of validation measures, combined with ranking based on measures' dataset specific preferences, provides an objective way to select clustering methodologies, taking into account characteristic evaluation from each measure.

q-bio.QM