arXiv subjects

Oylum Şeker

Publications and source records attributed to Oylum Şeker.

6 recordsLinked to original sources

arXiv2022

A Multiobjective Approach for Sector Duration Optimization in Stereotactic Radiosurgery Treatment Planning

Sector duration optimization (SDO) is a problem arising in treatment planning for stereotactic radiosurgery on Gamma Knife. Given a set of isocenter locations, SDO aims to select collimator size configurations and irradiation times thereof such that target tissues receive prescribed doses in a reasonable amount of treatment time, while healthy tissues nearby are spared. We present a multiobjective linear programming model for SDO to generate a diverse collection of solutions so that clinicians can select the most appropriate treatment. We develop a generic two-phase solution strategy based on the epsilon-constraint method for solving multiobjective optimization models, which aims to systematically increase the number of high-quality solutions obtained, instead of conducting a traditional uniform search. To improve solution quality further and to accelerate the procedure, we incorporate some general and problem-specific enhancements. Moreover, we propose an alternative version of our two-phase strategy, which makes use of machine learning tools to reduce the computational effort. In our computational study on eight previously treated real test cases, a significant portion of obtained solutions outperformed clinical results and those from a single-objective model from the literature. In addition to significant benefits of the algorithmic enhancements, our experiments illustrate the usefulness of machine learning strategies to reduce the overall run times nearly by half while maintaining or besting the clinical practice.

math.OC↗

arXiv2021

Routing and Wavelength Assignment with Protection: A Quadratic Unconstrained Binary Optimization Approach

The routing and wavelength assignment with protection is an important problem in telecommunications. Given an optical network and incoming connection requests, a commonly studied variant of the problem aims to grant maximum number of requests by assigning lightpaths at minimum network resource usage level, while ensuring the provided services remain functional in case of a single-link failure through dedicated path protection. We consider a practically relevant version where alternative lightpaths for requests are assumed to be given as a precomputed set, and show that it is NP-hard. We formulate the problem as an integer programming (IP) model, and also use it as a foundation to develop a novel quadratic unconstrained binary optimization (QUBO) model, which can be both directly solved by a state-of-the-art solver like GUROBI. We present necessary and sufficient conditions on objective function parameters to prioritize request granting objective over wavelength-link usage for both models, and a sufficient condition to ensure the exactness of the QUBO model. Moreover, we implement a problem-specific branch-and-cut algorithm for the IP model, and employ a new quantum-inspired technology, Digital Annealer (DA), for the QUBO model. We conduct computational experiments on a large suite of instances that are hard to optimally solve in order to assess the efficiency and efficacy of all of these approaches as well as a problem-specific heuristic. The results show that the emerging technology DA outperforms the considered established techniques coupled with GUROBI, in finding mostly significantly better or as good solutions in only two minutes compared to two hours of run time, whereas the problem-specific heuristic fails to be competitive.

math.OC↗

arXiv2020

An Exact Cutting Plane Algorithm to Solve the Selective Graph Coloring Problem in Perfect Graphs

We consider the selective graph coloring problem, which is a generalization of the classical graph coloring problem. Given a graph together with a partition of its vertex set into clusters, we want to choose exactly one vertex per cluster so that the number of colors needed to color the selected set of vertices is minimized. This problem is known to be NP-hard. In this study, we focus on an exact cutting plane algorithm for selective graph coloring in perfect graphs. Since there exists no suite of perfect graph instances to the best of our knowledge, we also propose an algorithm to randomly (but not uniformly) generate perfect graphs, and provide a large collection of instances available online. We conduct computational experiments to test our method on graphs with varying size and densities, and compare our results with a state-of-the-art algorithm from the literature and with solving an integer programming formulation of the problem by CPLEX. Our experiments demonstrate that our solution strategy significantly improves the solvability of the problem.

cs.DS↗

arXiv2020

Digital Annealer for quadratic unconstrained binary optimization: a comparative performance analysis

Digital Annealer (DA) is a computer architecture designed for tackling combinatorial optimization problems formulated as quadratic unconstrained binary optimization (QUBO) models. In this paper, we present the results of an extensive computational study to evaluate the performance of DA in a systematic way in comparison to multiple state-of-the-art solvers for different problem classes. We examine pure QUBO models, as well as QUBO reformulations of three constrained problems, namely quadratic assignment, quadratic cycle partition, and selective graph coloring, with the last two being new applications for DA. For the selective graph coloring problem, we also present a size reduction heuristic that significantly increases the number of eligible instances for DA. Our experimental results show that despite being in its development stage, DA can provide high-quality solutions quickly and in that regard rivals the state of the art, particularly for large instances. Moreover, as opposed to established solvers, within its limit on the number of decision variables, DA's solution times are not affected by the increase in instance size. These findings illustrate that DA has the potential to become a successful technology in tackling combinatorial optimization problems.

math.OC↗

arXiv2019

The Complexity of Subtree Intersection Representation of Chordal Graphs and Linear Time Chordal Graph Generation

It is known that any chordal graph on $n$ vertices can be represented as the intersection of $n$ subtrees in a tree on $n$ nodes. This fact is recently used in [2] to generate random chordal graphs on $n$ vertices by generating $n$ subtrees of a tree on $n$ nodes. It follows that the space (and thus time) complexity of such an algorithm is at least the sum of the sizes of the generated subtrees assuming that a tree is given by a set of nodes. In [2], this complexity was mistakenly claimed to be linear in the number $m$ of edges of the generated chordal graph. This error is corrected in [3] where the space complexity is shown to be $Ω(m n^{1/4})$. The exact complexity of the algorithm is left as an open question. In this paper, we show that the sum of the sizes of $n$ subtrees in a tree on $n$ nodes is $Θ(m\sqrt{n})$. We also show that we can confine ourselves to contraction-minimal subtree intersection representations since they are sufficient to generate every chordal graph. Furthermore, the sum of the sizes of the subtrees in such a representation is at most $2m+n$. We use this result to derive the first linear time random chordal graph generator. Based on contraction-minimal representations, we also derive structural properties of chordal graphs related to their connectivity. In addition to these theoretical results, we conduct experiments to study the quality of the chordal graphs generated by our algorithm and compare them to those in the literature. Our experimental study indicates that the generated graphs do not have a restricted structure and the sizes of maximal cliques are distributed fairly over the range. Furthermore, our algorithm is simple to implement and produces graphs with 10000 vertices and $4 . 10^7$ edges in less than one second on a laptop computer.

cs.DS↗

arXiv2018

Generation of random chordal graphs using subtrees of a tree

Chordal graphs form one of the most studied graph classes. Several graph problems that are NP-hard in general become solvable in polynomial time on chordal graphs, whereas many others remain NP-hard. For a large group of problems among the latter, approximation algorithms, parameterized algorithms, and algorithms with moderately exponential or sub-exponential running time have been designed. Chordal graphs have also gained increasing interest during the recent years in the area of enumeration algorithms. Being able to test these algorithms on instances of chordal graphs is crucial for understanding the concepts of tractability of hard problems on graph classes. Unfortunately, only few studies give algorithms for generating chordal graphs. Even in these papers, only very few methods aim for generating a large variety of chordal graphs. Surprisingly, none of these methods is directly based on the "intersection of subtrees of a tree" characterization of chordal graphs. In this paper, we give an algorithm for generating chordal graphs, based on the characterization that a graph is chordal if and only if it is the intersection graph of subtrees of a tree. Upon generating a random host tree, we give and test various methods that generate subtrees of the host tree. We compare our methods to one another and to existing ones for generating chordal graphs. Our experiments show that one of our methods is able to generate the largest variety of chordal graphs in terms of maximal clique sizes. Moreover, two of our subtree generation methods result in an overall complexity of our generation algorithm that is the best possible time complexity for a method generating the entire node set of subtrees in a "intersection of subtrees of a tree" representation. The instances corresponding to the results presented in this paper, and also a set of relatively small-sized instances are made available online.

cs.DM↗