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Ozer Duman

Publications and source records attributed to Ozer Duman.

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Collective Dynamics of Self-propelled Semiflexible Filaments

The collective behavior of active semiflexible filaments is studied with a model of tangentially driven self-propelled worm-like chains. The combination of excluded-volume interactions and self-propulsion leads to several distinct dynamic phases as a function of bending rigidity, activity, and aspect ratio of individual filaments. We consider first the case of intermediate filament density. For high-aspect-ratio filaments, we identify a transition with increasing propulsion from a state of free-swimming filaments to a state of spiraled filaments with nearly frozen translational motion. For lower aspect ratios, this gas-of-spirals phase is suppressed with growing density due to filament collisions; instead, filaments form clusters similar to self-propelled rods, as activity increases. Finite bending rigidity strongly effects the dynamics and phase behavior. Flexible filaments form small and transient clusters, while stiffer filaments organize into giant clusters, similarly as self-propelled rods, but with a reentrant phase behavior from giant to smaller clusters as activity becomes large enough to bend the filaments. For high filament densities, we identify a nearly frozen jamming state at low activities, a nematic laning state at intermediate activities, and an active-turbulence state at high activities. The latter state is characterized by a power-law decay of the energy spectrum as a function of wave number. The resulting phase diagrams encapsulate tunable non-equilibrium steady states that can be used in the organization of living matter.

physics.bio-ph

An SDE approximation for stochastic differential delay equations with state-dependent colored noise

We consider a general multidimensional stochastic differential delay equation (SDDE) with state-dependent colored noises. We approximate it by a stochastic differential equation (SDE) system and calculate its limit as the time delays and the correlation times of the noises go to zero. The main result is proven using a theorem about convergence of stochastic integrals by Kurtz and Protter. It formalizes and extends a result that has been obtained in the analysis of a noisy electrical circuit with delayed state-dependent noise, and may be used as a working SDE approximation of an SDDE modeling a real system where noises are correlated in time and whose response to noise sources depends on the system's state at a previous time.

math.PR