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P. M. C. de Oliveira

Publications and source records attributed to P. M. C. de Oliveira.

At least 19 recordsLinked to original sources
arXiv2016

Drag force in wind tunnels: a new method

A rigid object of general shape is fixed inside a wind tunnel. The drag force exerted on it by the wind is determined by a new method based on simple basic Physics concepts, provided one has a solver, any solver, for the corresponding dynamic Navier-Stokes equation which determines the wind velocity field around the object. The method is completely general, but here we apply it to the traditional problem of a long cylinder perpendicular to the wind.

physics.flu-dyn↗
arXiv2009

Modelling survival and allele complementation in the evolution of genomes with polymorphic loci

We have simulated the evolution of sexually reproducing populations composed of individuals represented by diploid genomes. A series of eight bits formed an allele occupying one of 128 loci of one haploid genome (chromosome). The environment required a specific activity of each locus, this being the sum of the activities of both alleles located at the corresponding loci on two chromosomes. This activity is represented by the number of bits set to zero. In a constant environment the best fitted individuals were homozygous with alleles' activities corresponding to half of the environment requirement for a locus (in diploid genome two alleles at corresponding loci produced a proper activity). Changing the environment under a relatively low recombination rate promotes generation of more polymorphic alleles. In the heterozygous loci, alleles of different activities complement each other fulfilling the environment requirements. Nevertheless, the genetic pool of populations evolves in the direction of a very restricted number of complementing haplotypes and a fast changing environment kills the population. If simulations start with all loci heterozygous, they stay heterozygous for a long time.

q-bio.GN↗
arXiv2009

Mapping the train model for earthquakes onto the stochastic sandpile model

We perform a computational study of a variant of the ``train'' model for earthquakes [PRA 46, 6288 (1992)], where we assume a static friction that is a stochastic function of position rather than being velocity dependent. The model consists of an array of blocks coupled by springs, with the forces between neighbouring blocks balanced by static friction. We calculate the probability, P(s), of the occurrence of avalanches with a size s or greater, finding that our results are consistent with the phenomenology and also with previous models which exhibit a power law over a wide range. We show that the train model may be mapped onto a stochastic sandpile model and study a variant of the latter for non-spherical grains. We show that, in this case, the model has critical behaviour only for grains with large aspect ratio, as was already shown in experiments with real ricepiles. We also demonstrate a way to introduce randomness in a physically motivated manner into the model.

cond-mat.stat-mech↗
arXiv2008

A simple branching model that reproduces language family and language population distributions

Human history leaves fingerprints in human languages. Little is known over language evolution and its study is of great importance. Here, we construct a simple stochastic model and compare its results to statistical data of real languages. The model bases on the recent findings that language changes occur independently on the population size. We find agreement with the data additionally assuming that languages may be distinguished by having at least one among a finite, small number of different features. This finite set is used also in order to define the distance between two languages, similarly to linguistics tradition since Swadesh.

physics.soc-ph↗
arXiv2008

Simulated self-organisation of death by inherited mutations

An agent-based computer simulation of death by inheritable mutations in a changing environment shows a maximal population, or avoids extinction, at so intermediate mutation rate of the individuals. Thus death seems needed to al for evolution of the fittest, as required by a changing environment.

q-bio.PE↗
arXiv2007

Does Sex Induce a Phase Transition?

We discovered a dynamic phase transition induced by sexual reproduction. The dynamics is a pure Darwinian rule with both fundamental ingredients to drive evolution: 1) random mutations and crossings which act in the sense of increasing the entropy (or diversity); and 2) selection which acts in the opposite sense by limiting the entropy explosion. Selection wins this competition if mutations performed at birth are few enough. By slowly increasing the average number m of mutations, however, the population suddenly undergoes a mutational degradation precisely at a transition point mc. Above this point, the "bad" alleles spread over the genetic pool of the population, overcoming the selection pressure. Individuals become selectively alike, and evolution stops. Only below this point, m < mc, evolutionary life is possible. The finite-size-scaling behaviour of this transition is exhibited for large enough "chromosome" lengths L. One important and surprising observation is the L-independence of the transition curves, for large L. They are also independent on the population size. Another is that mc is near unity, i.e. life cannot be stable with much more than one mutation per diploid genome, independent of the chromosome length, in agreement with reality. One possible consequence is that an eventual evolutionary jump towards larger L enabling the storage of more genetic information would demand an improved DNA copying machinery in order to keep the same total number of mutations per offspring.

q-bio.PE↗
arXiv2006

Fragmentation Experiment and Model for Falling Mercury Drops

The experiment consists of counting and measuring the size of the many fragments observed after the fall of a mercury drop on the floor. The size distribution follows a power-law for large enough fragments. We address the question of a possible crossover to a second, different power-law for small enough fragments. Two series of experiments were performed. The first uses a traditional film photographic camera, and the picture is later treated on a computer in order to count the fragments and classify them according to their sizes. The second uses a modern digital camera. The first approach has the advantage of a better resolution for small fragment sizes. The second, although with a poorer size resolution, is more reliable concerning the counting of all fragments up to its resolution limit. Both together clearly indicate the real existence of the quoted crossover. The model treats the system microscopically during the tiny time interval when the initial drop collides with the floor. The drop is modelled by a connected cluster of Ising spins pointing up (mercury) surrounded by Ising spins pointing down (air). The Ising coupling which tends to keep the spins segregated represents the surface tension. Initially the cluster carries an extra energy equally shared among all its spins, corresponding to the coherent kinetic energy due to the fall. Each spin which touches the floor loses its extra energy transformed into a thermal, incoherent energy represented by a temperature used then to follow the dynamics through Monte Carlo simulations. Whenever a small piece becomes disconnected from the big cluster, it is considered a fragment, and counted. The results also indicate the existence of the quoted crossover in the fragment-size distribution.

cond-mat.stat-mech↗
arXiv2006

Bit-strings and other modifications of Viviane model for language competition

The language competition model of Viviane de Oliveira et al is modified by associating with each language a string of 32 bits. Whenever a language changes in this Viviane model, also one randomly selected bit is flipped. If then only languages with different bit-strings are counted as different, the resulting size distribution of languages agrees with the empirically observed slightly asymmetric log-normal distribution. Several other modifications were also tried but either had more free parameters or agreed less well with reality.

physics.soc-ph↗
arXiv2006

Optimization of hierarchical structures of information flow

The efficiency of a large hierarchical organisation is simulated on Barabasi-Albert networks, when each needed link leads to a loss of information. The optimum is found at a finite network size, corresponding to about five hierarchical layers, provided a cost for building the network is included in our optimization.

physics.soc-ph↗
arXiv2006

Ising Ferromagnet: Zero-Temperature Dynamic Evolution

The dynamic evolution at zero temperature of a uniform Ising ferromagnet on a square lattice is followed by Monte Carlo computer simulations. The system always eventually reaches a final, absorbing state, which sometimes coincides with a ground state (all spins parallel), and sometimes does not (parallel stripes of spins up and down). We initiate here the numerical study of ``Chaotic Time Dependence'' (CTD) by seeing how much information about the final state is predictable from the randomly generated quenched initial state. CTD was originally proposed to explain how nonequilibrium spin glasses could manifest equilibrium pure state structure, but in simpler systems such as homogeneous ferromagnets it is closely related to long-term predictability and our results suggest that CTD might indeed occur in the infinite volume limit.

physics.comp-ph↗
arXiv2004

Simple Bit-String Model for Lineage Branching

We introduce a population dynamics model, where individual genomes are represented by bit-strings. Selection is described by death probabilities which depend on these genomes, and new individuals continuously replace the ones that die, keeping the population constant. An offspring has the same genome as its (randomly chosen) parent, except for a small amount of (also random) mutations. Chance may thus generate a newborn with a genome that is better than that of its parent, and the newborn will have a smaller death probability. When this happens, this individual is a would-be founder of a new lineage. A new lineage is considered created if its alive descendence grows above a certain previously defined threshold. The time evolution of populations evolving under these rules is followed by computer simulations and the probability densities of lineage duration and size, among others, are computed. These densities show a scale-free behaviour, in accordance with some conjectures in paleoevolution, and suggesting a simple mechanism as explanation for the ubiquity of these power-laws.

cond-mat.stat-mech↗
arXiv2003

Are the Tails of Percolation Thresholds Gaussians ?

The probability distribution of percolation thresholds in finite lattices were first believed to follow a normal Gaussian behaviour. With increasing computer power and more efficient simulational techniques, this belief turned to a stretched exponential behaviour, instead. Here, based on a further improvement of Monte Carlo data, we show evidences that this question is not yet answered at all.

cond-mat.stat-mech↗
arXiv2003

Corrections to Finite Size Scaling in Percolation

A 1/L-expansion for percolation problems is proposed, where L is the lattice finite length. The square lattice with 27 different sizes L = 18, 22 ... 1594 is considered. Certain spanning probabilities were determined by Monte Carlo simulations, as continuous functions of the site occupation probability p. We estimate the critical threshold pc by applying the quoted expansion to these data. Also, the universal spanning probability at pc for an annulus with aspect ratio r=1/2 is estimated as C = 0.876657(45).

cond-mat.stat-mech↗
arXiv2002

Bit-String Models for Parasex

We present different bit-string models of haploid asexual populations in which individuals may exchange part of their genome with other individuals (parasex) according to a given probability. We study the advantages of this parasex concerning population sizes, genetic fitness and diversity. We find that the exchange of genomes always improves these features.

cond-mat.stat-mech↗
arXiv2001

Dynamic Drop Models

We follow the dynamic evolution of a cluster of Ising spins pointing up surrounded by other spins pointing down, on a lattice. The cluster represents a liquid drop. Under a microscopic point of view, the short range ferromagnetic coupling between these spins plays the role of the van der Waals attraction. Alternatively, under a macroscopic point of view, the same ferromagnetic coupling gives rise to the surface tension along the drop boundary. This naive model is applied to the study of different systems, out of thermodynamic equilibrium. For each such a system, other interaction terms can be included, for instance an external magnetic field with a downwards uniform gradient, representing Earth's gravity. Also, for each system, proper dynamic rules and boundary conditions are adopted. The behaviour of such a drop is monitored as a function of time, through computer simulations. Many quantities of interest, in particular those related to drop fragmentation, were measured and the results were compared with available experimental data. The real systems we have in mind are exemplified by water drops falling from a leaky faucet, nuclear multifragmentation, mercury drops falling on the ground, magnetic hysteresis curves, and interface roughness.

cond-mat↗
arXiv2000

Computer Simulations for Biological Ageing and Sexual Reproduction

The sexual version of the Penna model of biological ageing, simulated since 1996, is compared here with alternative forms of reproduction as well as with models not involving ageing. In particular we want to check how sexual forms of life could have evolved and won over earlier asexual forms hundreds of million years ago. This computer model is based on the mutation-accumulation theory of ageing, using bits-strings to represent the genome. Its population dynamics is studied by Monte Carlo methods.

cond-mat.stat-mech↗
arXiv2000

Pin-Hole Water Flow from Cylindrical Bottles

We performed an experiment on elementary hydrodynamics. The basic system is a cylindrical bottle from which water flows through a pin-hole located at the bottom of its lateral surface. We measured the speed of the water leaving the pin-hole, as a function of both the time and the current level of water still inside the bottle. The experimental results are compared with the theory. The theoretical treatment is a very simple one based on mass and energy conservation, corresponding to a widespread exercise usually adopted in university basic disciplines of Physics. We extended the previous experiment to another similar system using two equal bottles with equal pin-holes. The water flowing from the first bottle feeds the second one located below it. The same concepts of mass and energy conservation now lead to a non-trivial differential equation for the lowest bottle dynamics. We solved this equation both numerically and analytically, comparing the results with the experimental data.

cond-mat↗