arXiv subjects

Pablo Márquez-Neila

Publications and source records attributed to Pablo Márquez-Neila.

At least 19 recordsLinked to original sources

arXiv2025

Inferring geometry and material properties from Mueller matrices with machine learning

Mueller matrices (MMs) encode information on geometry and material properties, but recovering both simultaneously is an ill-posed problem. We explore whether MMs contain sufficient information to infer surface geometry and material properties with machine learning. We use a dataset of spheres of various isotropic materials, with MMs captured over the full angular domain at five visible wavelengths (450-650 nm). We train machine learning models to predict material properties and surface normals using only these MMs as input. We demonstrate that, even when the material type is unknown, surface normals can be predicted and object geometry reconstructed. Moreover, MMs allow models to identify material types correctly. Further analyses show that diagonal elements are key for material characterization, and off-diagonal elements are decisive for normal estimation.

physics.optics↗

arXiv2025

Iterative Deployment Exposure for Unsupervised Out-of-Distribution Detection

Deep learning models are vulnerable to performance degradation when encountering out-of-distribution (OOD) images, potentially leading to misdiagnoses and compromised patient care. These shortcomings have led to great interest in the field of OOD detection. Existing unsupervised OOD (U-OOD) detection methods typically assume that OOD samples originate from an unconcentrated distribution complementary to the training distribution, neglecting the reality that deployed models passively accumulate task-specific OOD samples over time. To better reflect this real-world scenario, we introduce Iterative Deployment Exposure (IDE), a novel and more realistic setting for U-OOD detection. We propose CSO, a method for IDE that starts from a U-OOD detector that is agnostic to the OOD distribution and slowly refines it during deployment using observed unlabeled data. CSO uses a new U-OOD scoring function that combines the Mahalanobis distance with a nearest-neighbor approach, along with a novel confidence-scaled few-shot OOD detector to effectively learn from limited OOD examples. We validate our approach on a dedicated benchmark, showing that our method greatly improves upon strong baselines on three medical imaging modalities.

cs.CV↗

arXiv2024

Non-Linear Outlier Synthesis for Out-of-Distribution Detection

The reliability of supervised classifiers is severely hampered by their limitations in dealing with unexpected inputs, leading to great interest in out-of-distribution (OOD) detection. Recently, OOD detectors trained on synthetic outliers, especially those generated by large diffusion models, have shown promising results in defining robust OOD decision boundaries. Building on this progress, we present NCIS, which enhances the quality of synthetic outliers by operating directly in the diffusion's model embedding space rather than combining disjoint models as in previous work and by modeling class-conditional manifolds with a conditional volume-preserving network for more expressive characterization of the training distribution. We demonstrate that these improvements yield new state-of-the-art OOD detection results on standard ImageNet100 and CIFAR100 benchmarks and provide insights into the importance of data pre-processing and other key design choices. We make our code available at \url{https://github.com/LarsDoorenbos/NCIS}.

cs.CV↗

arXiv2024

Galaxy spectroscopy without spectra: Galaxy properties from photometric images with conditional diffusion models

Modern spectroscopic surveys can only target a small fraction of the vast amount of photometrically cataloged sources in wide-field surveys. Here, we report the development of a generative AI method capable of predicting optical galaxy spectra from photometric broad-band images alone. This method draws from the latest advances in diffusion models in combination with contrastive networks. We pass multi-band galaxy images into the architecture to obtain optical spectra. From these, robust values for galaxy properties can be derived with any methods in the spectroscopic toolbox, such as standard population synthesis techniques and Lick indices. When trained and tested on 64x64-pixel images from the Sloan Digital Sky Survey, the global bimodality of star-forming and quiescent galaxies in photometric space is recovered, as well as a mass-metallicity relation of star-forming galaxies. The comparison between the observed and the artificially created spectra shows good agreement in overall metallicity, age, Dn4000, stellar velocity dispersion, and E(B-V) values. Photometric redshift estimates of our generative algorithm can compete with other current, specialized deep-learning techniques. Moreover, this work is the first attempt in the literature to infer velocity dispersion from photometric images. Additionally, we can predict the presence of an active galactic nucleus up to an accuracy of 82%. With our method, scientifically interesting galaxy properties, normally requiring spectroscopic inputs, can be obtained in future data sets from large-scale photometric surveys alone. The spectra prediction via AI can further assist in creating realistic mock catalogs.

astro-ph.GA↗

arXiv2024

Targeted Visual Prompting for Medical Visual Question Answering

With growing interest in recent years, medical visual question answering (Med-VQA) has rapidly evolved, with multimodal large language models (MLLMs) emerging as an alternative to classical model architectures. Specifically, their ability to add visual information to the input of pre-trained LLMs brings new capabilities for image interpretation. However, simple visual errors cast doubt on the actual visual understanding abilities of these models. To address this, region-based questions have been proposed as a means to assess and enhance actual visual understanding through compositional evaluation. To combine these two perspectives, this paper introduces targeted visual prompting to equip MLLMs with region-based questioning capabilities. By presenting the model with both the isolated region and the region in its context in a customized visual prompt, we show the effectiveness of our method across multiple datasets while comparing it to several baseline models. Our code and data are available at https://github.com/sergiotasconmorales/locvqallm.

cs.CV↗

arXiv2024

Learning Non-Linear Invariants for Unsupervised Out-of-Distribution Detection

The inability of deep learning models to handle data drawn from unseen distributions has sparked much interest in unsupervised out-of-distribution (U-OOD) detection, as it is crucial for reliable deep learning models. Despite considerable attention, theoretically-motivated approaches are few and far between, with most methods building on top of some form of heuristic. Recently, U-OOD was formalized in the context of data invariants, allowing a clearer understanding of how to characterize U-OOD, and methods leveraging affine invariants have attained state-of-the-art results on large-scale benchmarks. Nevertheless, the restriction to affine invariants hinders the expressiveness of the approach. In this work, we broaden the affine invariants formulation to a more general case and propose a framework consisting of a normalizing flow-like architecture capable of learning non-linear invariants. Our novel approach achieves state-of-the-art results on an extensive U-OOD benchmark, and we demonstrate its further applicability to tabular data. Finally, we show our method has the same desirable properties as those based on affine invariants.

cs.CV↗

arXiv2024

Hyperbolic Random Forests

Hyperbolic space is becoming a popular choice for representing data due to the hierarchical structure - whether implicit or explicit - of many real-world datasets. Along with it comes a need for algorithms capable of solving fundamental tasks, such as classification, in hyperbolic space. Recently, multiple papers have investigated hyperbolic alternatives to hyperplane-based classifiers, such as logistic regression and SVMs. While effective, these approaches struggle with more complex hierarchical data. We, therefore, propose to generalize the well-known random forests to hyperbolic space. We do this by redefining the notion of a split using horospheres. Since finding the globally optimal split is computationally intractable, we find candidate horospheres through a large-margin classifier. To make hyperbolic random forests work on multi-class data and imbalanced experiments, we furthermore outline a new method for combining classes based on their lowest common ancestor and a class-balanced version of the large-margin loss. Experiments on standard and new benchmarks show that our approach outperforms both conventional random forest algorithms and recent hyperbolic classifiers.

cs.LG↗

arXiv2024

Masked Image Modelling for retinal OCT understanding

This work explores the effectiveness of masked image modelling for learning representations of retinal OCT images. To this end, we leverage Masked Autoencoders (MAE), a simple and scalable method for self-supervised learning, to obtain a powerful and general representation for OCT images by training on 700K OCT images from 41K patients collected under real world clinical settings. We also provide the first extensive evaluation for a model of OCT on a challenging battery of 6 downstream tasks. Our model achieves strong performance when fully finetuned but can also serve as a versatile frozen feature extractor for many tasks using lightweight adapters. Furthermore, we propose an extension of the MAE pretraining to fuse OCT with an auxiliary modality, namely, IR fundus images and learn a joint model for both. We demonstrate our approach improves performance on a multimodal downstream application. Our experiments utilize most publicly available OCT datasets, thus enabling future comparisons. Our code and model weights are publicly available https://github.com/TheoPis/MIM_OCT.

cs.CV↗

arXiv2023

Stochastic Segmentation with Conditional Categorical Diffusion Models

Semantic segmentation has made significant progress in recent years thanks to deep neural networks, but the common objective of generating a single segmentation output that accurately matches the image's content may not be suitable for safety-critical domains such as medical diagnostics and autonomous driving. Instead, multiple possible correct segmentation maps may be required to reflect the true distribution of annotation maps. In this context, stochastic semantic segmentation methods must learn to predict conditional distributions of labels given the image, but this is challenging due to the typically multimodal distributions, high-dimensional output spaces, and limited annotation data. To address these challenges, we propose a conditional categorical diffusion model (CCDM) for semantic segmentation based on Denoising Diffusion Probabilistic Models. Our model is conditioned to the input image, enabling it to generate multiple segmentation label maps that account for the aleatoric uncertainty arising from divergent ground truth annotations. Our experimental results show that CCDM achieves state-of-the-art performance on LIDC, a stochastic semantic segmentation dataset, and outperforms established baselines on the classical segmentation dataset Cityscapes.

cs.CV↗

arXiv2023

Localized Questions in Medical Visual Question Answering

Visual Question Answering (VQA) models aim to answer natural language questions about given images. Due to its ability to ask questions that differ from those used when training the model, medical VQA has received substantial attention in recent years. However, existing medical VQA models typically focus on answering questions that refer to an entire image rather than where the relevant content may be located in the image. Consequently, VQA models are limited in their interpretability power and the possibility to probe the model about specific image regions. This paper proposes a novel approach for medical VQA that addresses this limitation by developing a model that can answer questions about image regions while considering the context necessary to answer the questions. Our experimental results demonstrate the effectiveness of our proposed model, outperforming existing methods on three datasets. Our code and data are available at https://github.com/sergiotasconmorales/locvqa.

cs.CV↗

arXiv2023

Unsupervised out-of-distribution detection for safer robotically guided retinal microsurgery

Purpose: A fundamental problem in designing safe machine learning systems is identifying when samples presented to a deployed model differ from those observed at training time. Detecting so-called out-of-distribution (OoD) samples is crucial in safety-critical applications such as robotically guided retinal microsurgery, where distances between the instrument and the retina are derived from sequences of 1D images that are acquired by an instrument-integrated optical coherence tomography (iiOCT) probe. Methods: This work investigates the feasibility of using an OoD detector to identify when images from the iiOCT probe are inappropriate for subsequent machine learning-based distance estimation. We show how a simple OoD detector based on the Mahalanobis distance can successfully reject corrupted samples coming from real-world ex vivo porcine eyes. Results: Our results demonstrate that the proposed approach can successfully detect OoD samples and help maintain the performance of the downstream task within reasonable levels. MahaAD outperformed a supervised approach trained on the same kind of corruptions and achieved the best performance in detecting OoD cases from a collection of iiOCT samples with real-world corruptions. Conclusion: The results indicate that detecting corrupted iiOCT data through OoD detection is feasible and does not need prior knowledge of possible corruptions. Consequently, MahaAD could aid in ensuring patient safety during robotically guided microsurgery by preventing deployed prediction models from estimating distances that put the patient at risk.

cs.CV↗

arXiv2023

Logical Implications for Visual Question Answering Consistency

Despite considerable recent progress in Visual Question Answering (VQA) models, inconsistent or contradictory answers continue to cast doubt on their true reasoning capabilities. However, most proposed methods use indirect strategies or strong assumptions on pairs of questions and answers to enforce model consistency. Instead, we propose a novel strategy intended to improve model performance by directly reducing logical inconsistencies. To do this, we introduce a new consistency loss term that can be used by a wide range of the VQA models and which relies on knowing the logical relation between pairs of questions and answers. While such information is typically not available in VQA datasets, we propose to infer these logical relations using a dedicated language model and use these in our proposed consistency loss function. We conduct extensive experiments on the VQA Introspect and DME datasets and show that our method brings improvements to state-of-the-art VQA models, while being robust across different architectures and settings.

cs.CV↗

arXiv2022

Generating astronomical spectra from photometry with conditional diffusion models

A trade-off between speed and information controls our understanding of astronomical objects. Fast-to-acquire photometric observations provide global properties, while costly and time-consuming spectroscopic measurements enable a better understanding of the physics governing their evolution. Here, we tackle this problem by generating spectra directly from photometry, through which we obtain an estimate of their intricacies from easily acquired images. This is done by using multi-modal conditional diffusion models, where the best out of the generated spectra is selected with a contrastive network. Initial experiments on minimally processed SDSS galaxy data show promising results.

astro-ph.IM↗

arXiv2022

ULISSE: A Tool for One-shot Sky Exploration and its Application to Active Galactic Nuclei Detection

Modern sky surveys are producing ever larger amounts of observational data, which makes the application of classical approaches for the classification and analysis of objects challenging and time-consuming. However, this issue may be significantly mitigated by the application of automatic machine and deep learning methods. We propose ULISSE, a new deep learning tool that, starting from a single prototype object, is capable of identifying objects sharing the same morphological and photometric properties, and hence of creating a list of candidate sosia. In this work, we focus on applying our method to the detection of AGN candidates in a Sloan Digital Sky Survey galaxy sample, since the identification and classification of Active Galactic Nuclei (AGN) in the optical band still remains a challenging task in extragalactic astronomy. Intended for the initial exploration of large sky surveys, ULISSE directly uses features extracted from the ImageNet dataset to perform a similarity search. The method is capable of rapidly identifying a list of candidates, starting from only a single image of a given prototype, without the need for any time-consuming neural network training. Our experiments show ULISSE is able to identify AGN candidates based on a combination of host galaxy morphology, color and the presence of a central nuclear source, with a retrieval efficiency ranging from 21% to 65% (including composite sources) depending on the prototype, where the random guess baseline is 12%. We find ULISSE to be most effective in retrieving AGN in early-type host galaxies, as opposed to prototypes with spiral- or late-type properties. Based on the results described in this work, ULISSE can be a promising tool for selecting different types of astrophysical objects in current and future wide-field surveys (e.g. Euclid, LSST etc.) that target millions of sources every single night.

astro-ph.IM↗

arXiv2022

Data Invariants to Understand Unsupervised Out-of-Distribution Detection

Unsupervised out-of-distribution (U-OOD) detection has recently attracted much attention due its importance in mission-critical systems and broader applicability over its supervised counterpart. Despite this increase in attention, U-OOD methods suffer from important shortcomings. By performing a large-scale evaluation on different benchmarks and image modalities, we show in this work that most popular state-of-the-art methods are unable to consistently outperform a simple anomaly detector based on pre-trained features and the Mahalanobis distance (MahaAD). A key reason for the inconsistencies of these methods is the lack of a formal description of U-OOD. Motivated by a simple thought experiment, we propose a characterization of U-OOD based on the invariants of the training dataset. We show how this characterization is unknowingly embodied in the top-scoring MahaAD method, thereby explaining its quality. Furthermore, our approach can be used to interpret predictions of U-OOD detectors and provides insights into good practices for evaluating future U-OOD methods.

cs.CV↗

arXiv2022

Consistency-preserving Visual Question Answering in Medical Imaging

Visual Question Answering (VQA) models take an image and a natural-language question as input and infer the answer to the question. Recently, VQA systems in medical imaging have gained popularity thanks to potential advantages such as patient engagement and second opinions for clinicians. While most research efforts have been focused on improving architectures and overcoming data-related limitations, answer consistency has been overlooked even though it plays a critical role in establishing trustworthy models. In this work, we propose a novel loss function and corresponding training procedure that allows the inclusion of relations between questions into the training process. Specifically, we consider the case where implications between perception and reasoning questions are known a-priori. To show the benefits of our approach, we evaluate it on the clinically relevant task of Diabetic Macular Edema (DME) staging from fundus imaging. Our experiments show that our method outperforms state-of-the-art baselines, not only by improving model consistency, but also in terms of overall model accuracy. Our code and data are available at https://github.com/sergiotasconmorales/consistency_vqa.

cs.CV↗

arXiv2020

Information content of JWST-NIRSPEC transmission spectra of warm Neptunes

Warm Neptunes offer a rich opportunity for understanding exo-atmospheric chemistry. With the upcoming James Webb Space Telescope (JWST), there is a need to elucidate the balance between investments in telescope time versus scientific yield. We use the supervised machine learning method of the random forest to perform an information content analysis on a 11-parameter model of transmission spectra from the various NIRSpec modes. The three bluest medium-resolution NIRSpec modes (0.7 - 1.27 microns, 0.97 - 1.84 microns, 1.66 - 3.07 microns) are insensitive to the presence of CO. The reddest medium-resolution mode (2.87 - 5.10 microns) is sensitive to all of the molecules assumed in our model: CO, CO2, CH4, C2H2, H2O, HCN and NH3. It competes effectively with the three bluest modes on the information encoded on cloud abundance and particle size. It is also competitive with the low-resolution prism mode (0.6 - 5.3 microns) on the inference of every parameter except for the temperature and ammonia abundance. We recommend astronomers to use the reddest medium-resolution NIRSpec mode for studying the atmospheric chemistry of 800-1200 K warm Neptunes; its corresponding high-resolution counterpart offers diminishing returns. We compare our findings to previous JWST information content analyses that favor the blue orders, and suggest that the reliance on chemical equilibrium could lead to biased outcomes if this assumption does not apply. A simple, pressure-independent diagnostic for identifying chemical disequilibrium is proposed based on measuring the abundances of H2O, CO and CO2.

astro-ph.EP↗

arXiv2020

Real-Time Camera Pose Estimation for Sports Fields

Given an image sequence featuring a portion of a sports field filmed by a moving and uncalibrated camera, such as the one of the smartphones, our goal is to compute automatically in real time the focal length and extrinsic camera parameters for each image in the sequence without using a priori knowledges of the position and orientation of the camera. To this end, we propose a novel framework that combines accurate localization and robust identification of specific keypoints in the image by using a fully convolutional deep architecture. Our algorithm exploits both the field lines and the players' image locations, assuming their ground plane positions to be given, to achieve accuracy and robustness that is beyond the current state of the art. We will demonstrate its effectiveness on challenging soccer, basketball, and volleyball benchmark datasets.

cs.CV↗