arXiv subjects

Pablo Ordejón

Publications and source records attributed to Pablo Ordejón.

18 recordsLinked to original sources

arXiv2026

Water Flow Through Polar and Non-Polar Nanopores: Insights from Multiscale Simulations

Global water stress has emerged as a critical challenge, driving the search for advanced membrane materials that enable efficient, selective water filtration and transport. In this context, two-dimensional nanoporous membranes provide an ideal platform to elucidate how atomic-scale structure and electronic polarization govern water flow under extreme confinement. In this study, we employ multiscale simulations to investigate the effect of water flow through nanopores in graphene and hexagonal boron nitride (hBN) membranes. Our results reveal significantly higher water flow in hBN membranes than in graphene. This enhanced flow is attributed to the asymmetry of the hBN pores, which induces an electric dipole moment, as confirmed by quantum-mechanical (QM) calculations. Classical molecular dynamics simulations further demonstrate that water molecules exhibit a random distribution with no preferential orientation near the graphene pores, whereas hBN induces strong structuring. Furthermore, hybrid quantum mechanics/molecular mechanics (QM/MM) simulations indicate that the dipole moment of the hBN pore increases in the presence of water, as evidenced by the average charge distribution. Conversely, the symmetric nature of graphene pores results in non-polar characteristics, as verified by both QM/MM and QM calculations. These findings provide valuable insights into the distinct water-transport properties when flowing through graphene and hBN nanopores, with potential implications for designing advanced nanofiltration membranes.

cond-mat.mtrl-sci↗

arXiv2025

Quantum Transport with Spin Orbit Coupling: New Developments in TranSIESTA

We present the implementation of spinor quantum transport within the non-equilibrium Green's function (NEGF) code TranSIESTA based on Density Functional Theory (DFT). First-principles methods play an essential role in molecular and material modelling, and the DFT+NEGF approach has become a widely-used tool for quantum transport simulation. Exisiting (open source) DFT-based quantum transport codes either model non-equilibrium/finite-bias cases in an approximate way or rely on the collinear spin approximation. Our new implementation closes this gap and enables the TranSIESTA code to use full spinor-wave functions. Thereby it provides a method for transport simulation of topological materials and devices based on spin-orbit coupling (SOC) or non-collinear spins. These materials hold enormous potential for the development of ultra-low energy electronics urgently needed for the design of sustainable technology. The new feature is tested for relevant systems determining magnetoresistance in iron nanostructures and transport properties of a lateral transition metal dichalcogenide heterojunction.

cond-mat.mes-hall↗

arXiv2023

Independent and coherent transitions between antiferromagnetic states of few-molecule systems

Spin-electronic devices are poised to become part of mainstream microelectronic technology .Downsizing them, however, faces the intrinsic difficulty that as ferromagnets become smaller, it becomes more difficult to stabilize their magnetic moment. Antiferromagnets are much more stable, and thus research on antiferromagnetic spintronics has developed into a fast-growing field. Here, we provide proof of concept data that allows us to expand the area of antiferromagnetic spintronics to the hitherto elusive level of individual molecules. In contrast to all previous work on molecular spintronics, our detection scheme of the molecule's spin state does not rely on a magnetic moment. Instead, we use field-effect transistor devices constituting of an isolated, contacted single-wall carbon nanotube covalently bound to a limited number of molecular antiferromagnets incorporating four Mn(II) or Co(II) ions. Time-dependent quantum transport measurement along the functionalized nanotube show step-like transitions between several distinct current levels, which we attribute to transitions between different antiferromagnetic states of individual molecular complexes grafted on the nanotube. A statistical analysis of the switching events using factorial cumulants indicates that the cobalt complexes switch independently from each other, while a coherent superposition of the antiferromagnetic spin states of the molecules along the nanotube is observed for the manganese complexes. The long coherence time (several seconds at 100 mK) is made possible by the absence of spin and orbital momentum in the relevant states of the manganese complex, while the cobalt complex includes a significant orbital momentum contribution due to the pseudo-octahedral d$^7$ metal centers.

cond-mat.mes-hall↗

arXiv2022

A pre-time-zero spatiotemporal microscopy technique for the ultrasensitive determination of the thermal diffusivity of thin films

Diffusion is one of the most ubiquitous transport phenomena in nature. Experimentally, it can be tracked by following point spreading in space and time. Here, we introduce a spatiotemporal pump-probe microscopy technique that exploits the residual spatial temperature profile obtained through the transient reflectivity when probe pulses arrive before pump pulses. This corresponds to an effective pump-probe time delay of 13 ns, determined by the repetition rate of our laser system (76 MHz). This pre-time-zero technique enables probing the diffusion of long-lived excitations created by previous pump pulses with nanometer accuracy, and is particularly powerful for following in-plane heat diffusion in thin films. In contrast to existing techniques for quantifying thermal transport it does not require any material input parameters or strong heating. We demonstrate the direct determination of the thermal diffusivities of the layered materials MoSe$_2$ (0.18 cm$^2$/s), WSe$_2$ (0.20 cm$^2$/s), MoS$_2$ (0.35 cm$^2$/s), and WS$_2$ (0.59 cm$^2$/s). This technique paves the way for observing novel nanoscale thermal transport phenomena and tracking diffusion of a broad range of species.

cond-mat.mes-hall↗

arXiv2022

Electrical Control of Spin-polarized Topological Currents in Monolayer WTe$_2$

We evidence the possibility for coherent electrical manipulation of the spin orientation of topologically protected edge states in a low-symmetry quantum spin Hall insulator. By using a combination of ab-initio simulations, symmetry-based modeling, and large-scale calculations of the spin Hall conductivity, it is shown that small electric fields can efficiently vary the spin textures of edge currents in monolayer 1T'-WTe2 by up to a 90-degree spin rotation, without jeopardizing their topological character. These findings suggest a new kind of gate-controllable spin-based device, topologically protected against disorder and of relevance for the development of topological spintronics.

cond-mat.mes-hall↗

arXiv2022

Colossal phonon drag enhanced thermopower in lightly doped diamond

Diamond is one of the most studied materials because of its unique combination of remarkable electrical, mechanical, thermal and optical properties. Using a fully self-consistent ab initio theory of coupled electron-phonon transport, we reveal another striking behavior: a huge drag enhancement of the thermopower of lightly doped diamond. Thermopower values of around 100,000 microvolts per Kelvin are found at 100 K, significantly exceeding the highest previously measured value in the correlated metal FeSb2, and occurring at much higher temperatures. The enormous thermopower in diamond arises primarily from exceptionally weak anharmonic phonon decay around and below 100 K that facilitates efficient momentum exchange between charge carriers and phonons through electron-phonon interactions. Exceedingly large thermoelectric power factors are also identified. This work gives insights into the physics of the coupled electron-phonon system in solids and advances our understanding of thermoelectric transport in the regime of strong drag.

cond-mat.mtrl-sci↗

arXiv2022

Tuning the Topological Band Gap of Bismuthene with Silicon-based Substrate

Some meta-stable polymorphs of bismuth monolayer (bismuthene) can host topologically nontrivial phases. However, it remains unclear if these polymorphs can become stable through interaction with a substrate, whether their topological properties are preserved, and how to design an optimal substrate to make the topological phase more robust. Using first-principles techniques we demonstrate that bismuthene polymorphs can become stable over silicon carbide (SiC), silicon (Si), silicon dioxide (SiO2) and that the proximity interaction in the heterostructures has a significant effect on the electronic structure of the monolayer, even when bonding is weak. We show that the van der Waals interactions and the breaking of the sublattice symmetry are the main factors driving changes in the electronic structure. Our work demonstrates that substrate interaction can strengthen the topological properties of bismuthene polymorphs and make them accessible for experimental investigation and technological applications.

cond-mat.mtrl-sci↗

arXiv2022

The elphbolt ab initio solver for the coupled electron-phonon Boltzmann transport equations

elphbolt is a modern Fortran (2018 standard) code for efficiently solving the coupled electron-phonon Boltzmann transport equations from first principles. Using results from density functional and density functional perturbation theory as inputs, it can calculate the effect of the non-equilibrium phonons on the electronic transport (phonon drag) and non-equilibrium electrons on the phononic transport (electron drag) in a fully self-consistent manner and obeying the constraints mandated by thermodynamics. It can calculate the lattice, charge, and thermoelectric transport coefficients for the temperature gradient and electric fields, and the effect of the mutual electron-phonon drag on these transport properties. The code fully exploits the symmetries of the crystal and the transport-active window to allow the sampling of extremely fine electron and phonon wave vector meshes required for accurately capturing the drag phenomena. The coarray feature of modern Fortran, which offers native and convenient support for parallelization, is utilized. The code is compact, readable, well-documented, and extensible by design.

cond-mat.mtrl-sci↗

arXiv2021

Competition between Ta-Ta and Te-Te bonding leading to the commensurate charge density wave in TaTe4

The origin of the charge density wave in TaTe$_4$ is discussed on the basis of a first-principles DFT analysis of the Fermi surface, electron-hole response function, phonon band structure of the average structure and structural optimization of the modulated phase. Analysis of the band structure and Fermi surface of the average structure clearly proves that despite the presence of TaTe$_4$ chains in the crystal structure, TaTe$_4$ is in fact a 3D material as far as the electronic structure near the Fermi level is concerned. A Fermi surface nesting mechanism is dismissed as the origin of the 2$a\times2a\times3c$ structural modulation. The optimized 2$a$\xone2$a$\xone3$c$ structure, which is found to be the more stable modulation in agreement with the experimental observations, can be obtained directly from a soft-phonon mode computed for the undistorted structure. Our results suggest that the driving force for the distortion is the maximization of Ta-Ta metal-metal bonding subject to inducing the minimum bonding decrease in the Te sublattice.

cond-mat.mtrl-sci↗

arXiv2021

Interference effects in one-dimensional moiré crystals

Interference effects in finite sections of one-dimensional moiré crystals are investigated using a Landauer-Büttiker formalism within the tight-binding approximation. We explain interlayer transport in double-wall carbon nanotubes and design a predictive model. Wave function interference is visible at the mesoscale: in the strong coupling regime, as a periodic modulation of quantum conductance and emergent localized states; in the localized-insulating regime, as a suppression of interlayer transport, and oscillations of the density of states. These results could be exploited to design quantum electronic devices.

cond-mat.mes-hall↗

arXiv2020

Electron-hole response function of transition metal trichalcogenides NbSe$_3$ and monoclinic-TaS$_3$

NbSe$_3$ and monoclinic-TaS$_3$ ($m$-TaS$_3$) are quasi-1D metals containing three different types of chains and undergoing two different charge density wave (CDW) Peierls transitions at T$_{P_1}$ and T$_{P_2}$. The nature of these transitions is discussed on the basis of first-principles DFT calculation of their electron-hole Lindhard response function. As a result of stronger inter-chain interactions the Fermi surface (FS) and Lindhard function of NbSe$_3$ are considerably more complex than those for $m$-TaS$_3$; however a common scenario can be put forward to rationalize the results. The intra-chain inter-band nesting processes dominate the strongest response for both type I and type III chains of the two compounds. Two well-defined maxima of the Lindhard response for NbSe$_3$ are found with the (0$a$*, 0$c$*) and (1/2$a$*, 1/2$c$*) transverse components at T$_{P_1}$ and T$_{P_2}$, respectively, whereas the second maximum is not observed for $m$-TaS$_3$ at T$_{P2}$. Analysis of the different inter-chain coupling mechanisms leads to the conclusion that FS nesting effects are only relevant to set the transverse $a$* components in NbSe$_3$. For the transverse coupling along $c$* in NbSe$_3$ and along both $a$* and $c$* for $m$-TaS$_3$, one must take into account the strongest inter-chain Coulomb coupling mechanism. Phonon spectrum calculations show the formation of a giant 2$k_F$ Kohn anomaly in $m$-TaS$_3$. All these results support the weak coupling scenario for the Peierls transition of transition metal trichalcogenides.

cond-mat.mtrl-sci↗

arXiv2020

SIESTA: recent developments and applications

A review of the present status, recent enhancements, and applicability of the SIESTA program is presented. Since its debut in the mid-nineties, SIESTA's flexibility, efficiency and free distribution has given advanced materials simulation capabilities to many groups worldwide. The core methodological scheme of SIESTA combines finite-support pseudo-atomic orbitals as basis sets, norm-conserving pseudopotentials, and a real-space grid for the representation of charge density and potentials and the computation of their associated matrix elements. Here we describe the more recent implementations on top of that core scheme, which include: full spin-orbit interaction, non-repeated and multiple-contact ballistic electron transport, DFT+U and hybrid functionals, time-dependent DFT, novel reduced-scaling solvers, density-functional perturbation theory, efficient Van der Waals non-local density functionals, and enhanced molecular-dynamics options. In addition, a substantial effort has been made in enhancing interoperability and interfacing with other codes and utilities, such as Wannier90 and the second-principles modelling it can be used for, an AiiDA plugin for workflow automatization, interface to Lua for steering SIESTA runs, and various postprocessing utilities. SIESTA has also been engaged in the Electronic Structure Library effort from its inception, which has allowed the sharing of various low level libraries, as well as data standards and support for them, in particular the PSML definition and library for transferable pseudopotentials, and the interface to the ELSI library of solvers. Code sharing is made easier by the new open-source licensing model of the program. This review also presents examples of application of the capabilities of the code, as well as a view of on-going and future developments.

physics.comp-ph↗

arXiv2012

Dielectric screening in extended systems using the self-consistent Sternheimer equation and localized basis sets

We develop a first-principles computational method for investigating the dielectric screening in extended systems using the self-consistent Sternheimer equation and localized non-orthogonal basis sets. Our approach does not require the explicit calculation of unoccupied electronic states, only uses two-center integrals, and has a theoretical scaling of order O(N^3). We demonstrate this method by comparing our calculations for silicon, germanium, diamond, and LiCl with reference planewaves calculations. We show that accuracy comparable to planewaves calculations can be achieved via a systematic optimization of the basis set.

cond-mat.mtrl-sci↗

arXiv2012

Performance of local orbital basis sets in the self-consistent Sternheimer method for dielectric matrices of extended systems

We present a systematic study of the performance of numerical pseudo-atomic orbital basis sets in the calculation of dielectric matrices of extended systems using the self-consistent Sternheimer approach of [F. Giustino et al., Phys. Rev. B 81 (11), 115105 (2010)]. In order to cover a range of systems, from more insulating to more metallic character, we discuss results for the three semiconductors diamond, silicon, and germanium. Dielectric matrices calculated using our method fall within 1-3% of reference planewaves calculations, demonstrating that this method is promising. We find that polarization orbitals are critical for achieving good agreement with planewaves calculations, and that only a few additional ζ's are required for obtaining converged results, provided the split norm is properly optimized. Our present work establishes the validity of local orbital basis sets and the self-consistent Sternheimer approach for the calculation of dielectric matrices in extended systems, and prepares the ground for future studies of electronic excitations using these methods.

cond-mat.mtrl-sci↗

arXiv2011

Magnetoresistance and Magnetic Ordering Fingerprints in Hydrogenated Graphene

Spin-dependent features in the conductivity of graphene, chemically modified by a random distribution of hydrogen adatoms, are explored theoretically. The spin effects are taken into account using a mean-field self-consistent Hubbard model derived from first-principles calculations. A Kubo-Greenwood transport methodology is used to compute the spin-dependent transport fingerprints of weakly hydrogenated graphene-based systems with realistic sizes. Conductivity responses are obtained for paramagnetic, antiferromagnetic, or ferromagnetic macroscopic states, constructed from the mean-field solutions obtained for small graphene supercells. Magnetoresistance signals up to $\sim 7%$ are calculated for hydrogen densities around 0.25%. These theoretical results could serve as guidance for experimental observation of induced magnetism in graphene.

cond-mat.mes-hall↗

arXiv2010

Band selection and disentanglement using maximally-localized Wannier functions: the cases of Co impurities in bulk copper and the Cu (111) surface

We have adapted the maximally-localized Wannier function approach of [I. Souza, N. Marzari and D. Vanderbilt, Phys. Rev. B 65, 035109 (2002)] to the density functional theory based Siesta method [J. M. Soler et al., J. Phys.: Cond. Mat. 14, 2745 (2002)] and applied it to the study of Co substitutional impurities in bulk copper as well as to the Cu (111) surface. In the Co impurity case, we have reduced the problem to the Co d-electrons and the Cu sp-band, permitting us to obtain an Anderson-like Hamiltonian from well defined density functional parameters in a fully orthonormal basis set. In order to test the quality of the Wannier approach to surfaces, we have studied the electronic structure of the Cu (111) surface by again transforming the density functional problem into the Wannier representation. An excellent description of the Shockley surface state is attained, permitting us to be confident in the application of this method to future studies of magnetic adsorbates in the presence of an extended surface state.

cond-mat.str-el↗

arXiv2006

Resistive and rectifying effects of pulling gold atoms at thiol-gold nano-contacts

We investigate, by means of first-principles calculations, structural and transport properties of junctions made of symmetric dithiolated molecules placed between Au electrodes. As the electrodes are pulled apart, we find that it becomes energetically favorable that Au atoms migrate to positions between the electrode surface and thiol terminations, with junction structures alternating between symmetric and asymmetric. As a result, the calculated $\emph{IV}$ curves alternate between rectifying and non-rectifying behaviors as the electrodes are pulled apart, which is consistent with recent experimental results.

cond-mat.mtrl-sci↗

arXiv2004

Sampling the diffusion paths of a neutral vacancy in Silicon with quantum mechanical calculations

We report a first-principles study of vacancy-induced self-diffusion in crystalline silicon. Starting form a fully relaxed configuration with a neutral vacancy, we proceed to search for local diffusion paths. The diffusion of the vacancy proceeds by hops to first nearest neighbor with an energy barrier of 0.40 eV in agreement with experimental results. Competing mechanisms are identified, like the reorientation, and the recombination of dangling bonds by Wooten-Winer-Weaire process.

cond-mat.mtrl-sci↗