arXiv subjects

Pankaj Gupta

Publications and source records attributed to Pankaj Gupta.

At least 37 records · Page 2Linked to original sources

arXiv2022

Unsupervised Contrastive Learning of Image Representations from Ultrasound Videos with Hard Negative Mining

Rich temporal information and variations in viewpoints make video data an attractive choice for learning image representations using unsupervised contrastive learning (UCL) techniques. State-of-the-art (SOTA) contrastive learning techniques consider frames within a video as positives in the embedding space, whereas the frames from other videos are considered negatives. We observe that unlike multiple views of an object in natural scene videos, an Ultrasound (US) video captures different 2D slices of an organ. Hence, there is almost no similarity between the temporally distant frames of even the same US video. In this paper we propose to instead utilize such frames as hard negatives. We advocate mining both intra-video and cross-video negatives in a hardness-sensitive negative mining curriculum in a UCL framework to learn rich image representations. We deploy our framework to learn the representations of Gallbladder (GB) malignancy from US videos. We also construct the first large-scale US video dataset containing 64 videos and 15,800 frames for learning GB representations. We show that the standard ResNet50 backbone trained with our framework improves the accuracy of models pretrained with SOTA UCL techniques as well as supervised pretrained models on ImageNet for the GB malignancy detection task by 2-6%. We further validate the generalizability of our method on a publicly available lung US image dataset of COVID-19 pathologies and show an improvement of 1.5% compared to SOTA. Source code, dataset, and models are available at https://gbc-iitd.github.io/usucl.

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arXiv2022

Surpassing the Human Accuracy: Detecting Gallbladder Cancer from USG Images with Curriculum Learning

We explore the potential of CNN-based models for gallbladder cancer (GBC) detection from ultrasound (USG) images as no prior study is known. USG is the most common diagnostic modality for GB diseases due to its low cost and accessibility. However, USG images are challenging to analyze due to low image quality, noise, and varying viewpoints due to the handheld nature of the sensor. Our exhaustive study of state-of-the-art (SOTA) image classification techniques for the problem reveals that they often fail to learn the salient GB region due to the presence of shadows in the USG images. SOTA object detection techniques also achieve low accuracy because of spurious textures due to noise or adjacent organs. We propose GBCNet to tackle the challenges in our problem. GBCNet first extracts the regions of interest (ROIs) by detecting the GB (and not the cancer), and then uses a new multi-scale, second-order pooling architecture specializing in classifying GBC. To effectively handle spurious textures, we propose a curriculum inspired by human visual acuity, which reduces the texture biases in GBCNet. Experimental results demonstrate that GBCNet significantly outperforms SOTA CNN models, as well as the expert radiologists. Our technical innovations are generic to other USG image analysis tasks as well. Hence, as a validation, we also show the efficacy of GBCNet in detecting breast cancer from USG images. Project page with source code, trained models, and data is available at https://gbc-iitd.github.io/gbcnet

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arXiv2021

Multi-source Neural Topic Modeling in Multi-view Embedding Spaces

Though word embeddings and topics are complementary representations, several past works have only used pretrained word embeddings in (neural) topic modeling to address data sparsity in short-text or small collection of documents. This work presents a novel neural topic modeling framework using multi-view embedding spaces: (1) pretrained topic-embeddings, and (2) pretrained word-embeddings (context insensitive from Glove and context-sensitive from BERT models) jointly from one or many sources to improve topic quality and better deal with polysemy. In doing so, we first build respective pools of pretrained topic (i.e., TopicPool) and word embeddings (i.e., WordPool). We then identify one or more relevant source domain(s) and transfer knowledge to guide meaningful learning in the sparse target domain. Within neural topic modeling, we quantify the quality of topics and document representations via generalization (perplexity), interpretability (topic coherence) and information retrieval (IR) using short-text, long-text, small and large document collections from news and medical domains. Introducing the multi-source multi-view embedding spaces, we have shown state-of-the-art neural topic modeling using 6 source (high-resource) and 5 target (low-resource) corpora.

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arXiv2020

TopicBERT for Energy Efficient Document Classification

Prior research notes that BERT's computational cost grows quadratically with sequence length thus leading to longer training times, higher GPU memory constraints and carbon emissions. While recent work seeks to address these scalability issues at pre-training, these issues are also prominent in fine-tuning especially for long sequence tasks like document classification. Our work thus focuses on optimizing the computational cost of fine-tuning for document classification. We achieve this by complementary learning of both topic and language models in a unified framework, named TopicBERT. This significantly reduces the number of self-attention operations - a main performance bottleneck. Consequently, our model achieves a 1.4x ($\sim40\%$) speedup with $\sim40\%$ reduction in $CO_2$ emission while retaining $99.9\%$ performance over 5 datasets.

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arXiv2019

Linguistically Informed Relation Extraction and Neural Architectures for Nested Named Entity Recognition in BioNLP-OST 2019

Named Entity Recognition (NER) and Relation Extraction (RE) are essential tools in distilling knowledge from biomedical literature. This paper presents our findings from participating in BioNLP Shared Tasks 2019. We addressed Named Entity Recognition including nested entities extraction, Entity Normalization and Relation Extraction. Our proposed approach of Named Entities can be generalized to different languages and we have shown it's effectiveness for English and Spanish text. We investigated linguistic features, hybrid loss including ranking and Conditional Random Fields (CRF), multi-task objective and token-level ensembling strategy to improve NER. We employed dictionary based fuzzy and semantic search to perform Entity Normalization. Finally, our RE system employed Support Vector Machine (SVM) with linguistic features. Our NER submission (team:MIC-CIS) ranked first in BB-2019 norm+NER task with standard error rate (SER) of 0.7159 and showed competitive performance on PharmaCo NER task with F1-score of 0.8662. Our RE system ranked first in the SeeDev-binary Relation Extraction Task with F1-score of 0.3738.

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arXiv2019

BioNLP-OST 2019 RDoC Tasks: Multi-grain Neural Relevance Ranking Using Topics and Attention Based Query-Document-Sentence Interactions

This paper presents our system details and results of participation in the RDoC Tasks of BioNLP-OST 2019. Research Domain Criteria (RDoC) construct is a multi-dimensional and broad framework to describe mental health disorders by combining knowledge from genomics to behaviour. Non-availability of RDoC labelled dataset and tedious labelling process hinders the use of RDoC framework to reach its full potential in Biomedical research community and Healthcare industry. Therefore, Task-1 aims at retrieval and ranking of PubMed abstracts relevant to a given RDoC construct and Task-2 aims at extraction of the most relevant sentence from a given PubMed abstract. We investigate (1) attention based supervised neural topic model and SVM for retrieval and ranking of PubMed abstracts and, further utilize BM25 and other relevance measures for re-ranking, (2) supervised and unsupervised sentence ranking models utilizing multi-view representations comprising of query-aware attention-based sentence representation (QAR), bag-of-words (BoW) and TF-IDF. Our best systems achieved 1st rank and scored 0.86 mean average precision (mAP) and 0.58 macro average accuracy (MAA) in Task-1 and Task-2 respectively.

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arXiv2019

Lifelong Neural Topic Learning in Contextualized Autoregressive Topic Models of Language via Informative Transfers

Topic models such as LDA, DocNADE, iDocNADEe have been popular in document analysis. However, the traditional topic models have several limitations including: (1) Bag-of-words (BoW) assumption, where they ignore word ordering, (2) Data sparsity, where the application of topic models is challenging due to limited word co-occurrences, leading to incoherent topics and (3) No Continuous Learning framework for topic learning in lifelong fashion, exploiting historical knowledge (or latent topics) and minimizing catastrophic forgetting. This thesis focuses on addressing the above challenges within neural topic modeling framework. We propose: (1) Contextualized topic model that combines a topic and a language model and introduces linguistic structures (such as word ordering, syntactic and semantic features, etc.) in topic modeling, (2) A novel lifelong learning mechanism into neural topic modeling framework to demonstrate continuous learning in sequential document collections and minimizing catastrophic forgetting. Additionally, we perform a selective data augmentation to alleviate the need for complete historical corpora during data hallucination or replay.

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arXiv2019

Multi-view and Multi-source Transfers in Neural Topic Modeling with Pretrained Topic and Word Embeddings

Though word embeddings and topics are complementary representations, several past works have only used pre-trained word embeddings in (neural) topic modeling to address data sparsity problem in short text or small collection of documents. However, no prior work has employed (pre-trained latent) topics in transfer learning paradigm. In this paper, we propose an approach to (1) perform knowledge transfer using latent topics obtained from a large source corpus, and (2) jointly transfer knowledge via the two representations (or views) in neural topic modeling to improve topic quality, better deal with polysemy and data sparsity issues in a target corpus. In doing so, we first accumulate topics and word representations from one or many source corpora to build a pool of topics and word vectors. Then, we identify one or multiple relevant source domain(s) and take advantage of corresponding topics and word features via the respective pools to guide meaningful learning in the sparse target domain. We quantify the quality of topic and document representations via generalization (perplexity), interpretability (topic coherence) and information retrieval (IR) using short-text, long-text, small and large document collections from news and medical domains. We have demonstrated the state-of-the-art results on topic modeling with the proposed framework.

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arXiv2019

Neural Architectures for Fine-Grained Propaganda Detection in News

This paper describes our system (MIC-CIS) details and results of participation in the fine-grained propaganda detection shared task 2019. To address the tasks of sentence (SLC) and fragment level (FLC) propaganda detection, we explore different neural architectures (e.g., CNN, LSTM-CRF and BERT) and extract linguistic (e.g., part-of-speech, named entity, readability, sentiment, emotion, etc.), layout and topical features. Specifically, we have designed multi-granularity and multi-tasking neural architectures to jointly perform both the sentence and fragment level propaganda detection. Additionally, we investigate different ensemble schemes such as majority-voting, relax-voting, etc. to boost overall system performance. Compared to the other participating systems, our submissions are ranked 3rd and 4th in FLC and SLC tasks, respectively.

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arXiv2019

textTOvec: Deep Contextualized Neural Autoregressive Topic Models of Language with Distributed Compositional Prior

We address two challenges of probabilistic topic modelling in order to better estimate the probability of a word in a given context, i.e., P(word|context): (1) No Language Structure in Context: Probabilistic topic models ignore word order by summarizing a given context as a "bag-of-word" and consequently the semantics of words in the context is lost. The LSTM-LM learns a vector-space representation of each word by accounting for word order in local collocation patterns and models complex characteristics of language (e.g., syntax and semantics), while the TM simultaneously learns a latent representation from the entire document and discovers the underlying thematic structure. We unite two complementary paradigms of learning the meaning of word occurrences by combining a TM (e.g., DocNADE) and a LM in a unified probabilistic framework, named as ctx-DocNADE. (2) Limited Context and/or Smaller training corpus of documents: In settings with a small number of word occurrences (i.e., lack of context) in short text or data sparsity in a corpus of few documents, the application of TMs is challenging. We address this challenge by incorporating external knowledge into neural autoregressive topic models via a language modelling approach: we use word embeddings as input of a LSTM-LM with the aim to improve the word-topic mapping on a smaller and/or short-text corpus. The proposed DocNADE extension is named as ctx-DocNADEe. We present novel neural autoregressive topic model variants coupled with neural LMs and embeddings priors that consistently outperform state-of-the-art generative TMs in terms of generalization (perplexity), interpretability (topic coherence) and applicability (retrieval and classification) over 6 long-text and 8 short-text datasets from diverse domains.

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arXiv2019

Document Informed Neural Autoregressive Topic Models with Distributional Prior

We address two challenges in topic models: (1) Context information around words helps in determining their actual meaning, e.g., "networks" used in the contexts "artificial neural networks" vs. "biological neuron networks". Generative topic models infer topic-word distributions, taking no or only little context into account. Here, we extend a neural autoregressive topic model to exploit the full context information around words in a document in a language modeling fashion. The proposed model is named as iDocNADE. (2) Due to the small number of word occurrences (i.e., lack of context) in short text and data sparsity in a corpus of few documents, the application of topic models is challenging on such texts. Therefore, we propose a simple and efficient way of incorporating external knowledge into neural autoregressive topic models: we use embeddings as a distributional prior. The proposed variants are named as DocNADEe and iDocNADEe. We present novel neural autoregressive topic model variants that consistently outperform state-of-the-art generative topic models in terms of generalization, interpretability (topic coherence) and applicability (retrieval and classification) over 7 long-text and 8 short-text datasets from diverse domains.

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arXiv2019

Neural Relation Extraction Within and Across Sentence Boundaries

Past work in relation extraction mostly focuses on binary relation between entity pairs within single sentence. Recently, the NLP community has gained interest in relation extraction in entity pairs spanning multiple sentences. In this paper, we propose a novel architecture for this task: inter-sentential dependency-based neural networks (iDepNN). iDepNN models the shortest and augmented dependency paths via recurrent and recursive neural networks to extract relationships within (intra-) and across (inter-) sentence boundaries. Compared to SVM and neural network baselines, iDepNN is more robust to false positives in relationships spanning sentences. We evaluate our models on four datasets from newswire (MUC6) and medical (BioNLP shared task) domains that achieve state-of-the-art performance and show a better balance in precision and recall for inter-sentential relationships. We perform better than 11 teams participating in the BioNLP shared task 2016 and achieve a gain of 5.2% (0.587 vs 0.558) in F1 over the winning team. We also release the crosssentence annotations for MUC6.

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arXiv2018

Document Informed Neural Autoregressive Topic Models

Context information around words helps in determining their actual meaning, for example "networks" used in contexts of artificial neural networks or biological neuron networks. Generative topic models infer topic-word distributions, taking no or only little context into account. Here, we extend a neural autoregressive topic model to exploit the full context information around words in a document in a language modeling fashion. This results in an improved performance in terms of generalization, interpretability and applicability. We apply our modeling approach to seven data sets from various domains and demonstrate that our approach consistently outperforms stateof-the-art generative topic models. With the learned representations, we show on an average a gain of 9.6% (0.57 Vs 0.52) in precision at retrieval fraction 0.02 and 7.2% (0.582 Vs 0.543) in F1 for text categorization.

cs.IR↗

arXiv2018

LISA: Explaining Recurrent Neural Network Judgments via Layer-wIse Semantic Accumulation and Example to Pattern Transformation

Recurrent neural networks (RNNs) are temporal networks and cumulative in nature that have shown promising results in various natural language processing tasks. Despite their success, it still remains a challenge to understand their hidden behavior. In this work, we analyze and interpret the cumulative nature of RNN via a proposed technique named as Layer-wIse-Semantic-Accumulation (LISA) for explaining decisions and detecting the most likely (i.e., saliency) patterns that the network relies on while decision making. We demonstrate (1) LISA: "How an RNN accumulates or builds semantics during its sequential processing for a given text example and expected response" (2) Example2pattern: "How the saliency patterns look like for each category in the data according to the network in decision making". We analyse the sensitiveness of RNNs about different inputs to check the increase or decrease in prediction scores and further extract the saliency patterns learned by the network. We employ two relation classification datasets: SemEval 10 Task 8 and TAC KBP Slot Filling to explain RNN predictions via the LISA and example2pattern.

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arXiv2018

Replicated Siamese LSTM in Ticketing System for Similarity Learning and Retrieval in Asymmetric Texts

The goal of our industrial ticketing system is to retrieve a relevant solution for an input query, by matching with historical tickets stored in knowledge base. A query is comprised of subject and description, while a historical ticket consists of subject, description and solution. To retrieve a relevant solution, we use textual similarity paradigm to learn similarity in the query and historical tickets. The task is challenging due to significant term mismatch in the query and ticket pairs of asymmetric lengths, where subject is a short text but description and solution are multi-sentence texts. We present a novel Replicated Siamese LSTM model to learn similarity in asymmetric text pairs, that gives 22% and 7% gain (Accuracy@10) for retrieval task, respectively over unsupervised and supervised baselines. We also show that the topic and distributed semantic features for short and long texts improved both similarity learning and retrieval.

cs.IR↗

arXiv2018

Deep Temporal-Recurrent-Replicated-Softmax for Topical Trends over Time

Dynamic topic modeling facilitates the identification of topical trends over time in temporal collections of unstructured documents. We introduce a novel unsupervised neural dynamic topic model named as Recurrent Neural Network-Replicated Softmax Model (RNNRSM), where the discovered topics at each time influence the topic discovery in the subsequent time steps. We account for the temporal ordering of documents by explicitly modeling a joint distribution of latent topical dependencies over time, using distributional estimators with temporal recurrent connections. Applying RNN-RSM to 19 years of articles on NLP research, we demonstrate that compared to state-of-the art topic models, RNNRSM shows better generalization, topic interpretation, evolution and trends. We also introduce a metric (named as SPAN) to quantify the capability of dynamic topic model to capture word evolution in topics over time.

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arXiv2018

Joint Bootstrapping Machines for High Confidence Relation Extraction

Semi-supervised bootstrapping techniques for relationship extraction from text iteratively expand a set of initial seed instances. Due to the lack of labeled data, a key challenge in bootstrapping is semantic drift: if a false positive instance is added during an iteration, then all following iterations are contaminated. We introduce BREX, a new bootstrapping method that protects against such contamination by highly effective confidence assessment. This is achieved by using entity and template seeds jointly (as opposed to just one as in previous work), by expanding entities and templates in parallel and in a mutually constraining fashion in each iteration and by introducing higherquality similarity measures for templates. Experimental results show that BREX achieves an F1 that is 0.13 (0.87 vs. 0.74) better than the state of the art for four relationships.

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arXiv2017

What are the visual features underlying human versus machine vision?

Although Deep Convolutional Networks (DCNs) are approaching the accuracy of human observers at object recognition, it is unknown whether they leverage similar visual representations to achieve this performance. To address this, we introduce Clicktionary, a web-based game for identifying visual features used by human observers during object recognition. Importance maps derived from the game are consistent across participants and uncorrelated with image saliency measures. These results suggest that Clicktionary identifies image regions that are meaningful and diagnostic for object recognition but different than those driving eye movements. Surprisingly, Clicktionary importance maps are only weakly correlated with relevance maps derived from DCNs trained for object recognition. Our study demonstrates that the narrowing gap between the object recognition accuracy of human observers and DCNs obscures distinct visual strategies used by each to achieve this performance.

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