arXiv subjects

Patrick Winter

Publications and source records attributed to Patrick Winter.

4 recordsLinked to original sources

arXiv2026

Toward Clinical Translation of Deep Learning-Based Intracranial Super-Resolution 4D Flow MRI Using Multi-Cohort Transfer Learning

We evaluated synthetic pretraining and multi-cohort transfer learning for deep learning-based super-resolution of intracranial 4D Flow MRI across heterogeneous neurologic cohorts. This mixed prospective-retrospective study analyzed 18 participants (12 healthy participants, 3 with moyamoya disease, and 3 with multiple sclerosis) with paired 1.2-mm and 0.6-mm 4D Flow MRI scans. A convolutional neural network pretrained on synthetic cerebrovascular data was fine-tuned using cohort-specific or pooled multi-cohort in vivo data. High-resolution-derived inputs enabled voxel-wise evaluation; native standard-resolution scans were used for angiographic and hemodynamic analyses. Synthetic pretraining reduced mean artery-wise velocity-normalized root mean square error (vNRMSE) versus interpolation (0.147 vs 0.166). Pooled transfer learning yielded the lowest mean vNRMSE (0.119 vs 0.127 for cohort-specific models and 0.147 for synthetic pretraining), with narrower 95% limits-of-agreement widths than synthetic pretraining across all test cases (0.109-0.222 vs 0.154-0.278 m/s). Super-resolved phase-contrast angiography achieved higher precision-recall area under the curve than native standard-resolution imaging in all cohorts (0.848-0.896 vs 0.486-0.805). These results indicate that pooled transfer learning improves cross-cohort reconstruction agreement and that super-resolution can improve vessel depiction, supporting further multi-center validation for cerebrovascular imaging.

cs.CV↗

arXiv2026

Spectrally optimized implicit neural representations mitigate acquisition-related image quality trade-offs in intracranial 4D Flow MRI

4D Flow MRI promises opportunities for non-invasive mapping of neurovascular hemodynamics, but its clinical utility faces trade-offs between resolution, acquisition time, and noise. Deep learning-based super-resolution offers a post-scan solution, but supervised approaches require paired or domain-specific data, while patient-specific physics-informed models can be computationally demanding. This creates a need for unsupervised reconstruction models that can adapt to individual acquisitions without paired high-resolution training data, while remaining robust across anatomy, disease severity, and acquisition quality. To address this, we introduce a spectrally tuned implicit neural representation (INR) framework for intracranial 4D Flow MRI, representing the velocity field as a continuous coordinate-based neural field using WIRE activation functions with tunable spectral bias. Data-driven and physics-informed variants were evaluated in nine cerebrovascular cases spanning healthy controls and moderate-to-severe intracranial atherosclerotic disease, using CFD-derived high-resolution reference fields, MR-realistic synthetic low-resolution inputs, and direct fitting to acquired in-vivo data. Cohort-optimal spectral-bias settings generalized across subjects with only small increases in relative error compared with subject-specific optima, reducing the need for case-specific hyperparameter tuning. Physics-informed regularization provided modest additional accuracy but required substantially longer optimization, whereas the data-driven INR achieved near-comparable reconstruction performance within minutes. The framework also remained robust to acquisition-realistic noise and moderate VENC-dependent aliasing. These findings establish spectrally optimized INRs as a flexible unsupervised approach for mitigating acquisition-related trade-offs in intracranial 4D Flow MRI.

eess.IV↗

arXiv2025

Automated Labeling of Intracranial Arteries with Uncertainty Quantification Using Deep Learning

Accurate anatomical labeling of intracranial arteries is essential for cerebrovascular diagnosis and hemodynamic analysis but remains time-consuming and subject to interoperator variability. We present a deep learning-based framework for automated artery labeling from 3D Time-of-Flight Magnetic Resonance Angiography (3D ToF-MRA) segmentations (n=35), incorporating uncertainty quantification to enhance interpretability and reliability. We evaluated three convolutional neural network architectures: (1) a UNet with residual encoder blocks, reflecting commonly used baselines in vascular labeling; (2) CS-Net, an attention-augmented UNet incorporating channel and spatial attention mechanisms for enhanced curvilinear structure recognition; and (3) nnUNet, a self-configuring framework that automates preprocessing, training, and architectural adaptation based on dataset characteristics. Among these, nnUNet achieved the highest labeling performance (average Dice score: 0.922; average surface distance: 0.387 mm), with improved robustness in anatomically complex vessels. To assess predictive confidence, we implemented test-time augmentation (TTA) and introduced a novel coordinate-guided strategy to reduce interpolation errors during augmented inference. The resulting uncertainty maps reliably indicated regions of anatomical ambiguity, pathological variation, or manual labeling inconsistency. We further validated clinical utility by comparing flow velocities derived from automated and manual labels in co-registered 4D Flow MRI datasets, observing close agreement with no statistically significant differences. Our framework offers a scalable, accurate, and uncertainty-aware solution for automated cerebrovascular labeling, supporting downstream hemodynamic analysis and facilitating clinical integration.

cs.CV↗

arXiv2023

Generalized super-resolution 4D Flow MRI $\unicode{x2013}$ using ensemble learning to extend across the cardiovascular system

4D Flow Magnetic Resonance Imaging (4D Flow MRI) is a non-invasive measurement technique capable of quantifying blood flow across the cardiovascular system. While practical use is limited by spatial resolution and image noise, incorporation of trained super-resolution (SR) networks has potential to enhance image quality post-scan. However, these efforts have predominantly been restricted to narrowly defined cardiovascular domains, with limited exploration of how SR performance extends across the cardiovascular system; a task aggravated by contrasting hemodynamic conditions apparent across the cardiovasculature. The aim of our study was to explore the generalizability of SR 4D Flow MRI using a combination of heterogeneous training sets and dedicated ensemble learning. With synthetic training data generated across three disparate domains (cardiac, aortic, cerebrovascular), varying convolutional base and ensemble learners were evaluated as a function of domain and architecture, quantifying performance on both in-silico and acquired in-vivo data from the same three domains. Results show that both bagging and stacking ensembling enhance SR performance across domains, accurately predicting high-resolution velocities from low-resolution input data in-silico. Likewise, optimized networks successfully recover native resolution velocities from downsampled in-vivo data, as well as show qualitative potential in generating denoised SR-images from clinical level input data. In conclusion, our work presents a viable approach for generalized SR 4D Flow MRI, with ensemble learning extending utility across various clinical areas of interest.

eess.IV↗