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Paul Fieguth

Publications and source records attributed to Paul Fieguth.

At least 37 records · Page 2Linked to original sources
arXiv2022

Machine Learning Challenges of Biological Factors in Insect Image Data

The BIOSCAN project, led by the International Barcode of Life Consortium, seeks to study changes in biodiversity on a global scale. One component of the project is focused on studying the species interaction and dynamics of all insects. In addition to genetically barcoding insects, over 1.5 million images per year will be collected, each needing taxonomic classification. With the immense volume of incoming images, relying solely on expert taxonomists to label the images would be impossible; however, artificial intelligence and computer vision technology may offer a viable high-throughput solution. Additional tasks including manually weighing individual insects to determine biomass, remain tedious and costly. Here again, computer vision may offer an efficient and compelling alternative. While the use of computer vision methods is appealing for addressing these problems, significant challenges resulting from biological factors present themselves. These challenges are formulated in the context of machine learning in this paper.

cs.CV↗
arXiv2022

Deep Learning for Instance Retrieval: A Survey

In recent years a vast amount of visual content has been generated and shared from many fields, such as social media platforms, medical imaging, and robotics. This abundance of content creation and sharing has introduced new challenges, particularly that of searching databases for similar content-Content Based Image Retrieval (CBIR)-a long-established research area in which improved efficiency and accuracy are needed for real-time retrieval. Artificial intelligence has made progress in CBIR and has significantly facilitated the process of instance search. In this survey we review recent instance retrieval works that are developed based on deep learning algorithms and techniques, with the survey organized by deep network architecture types, deep features, feature embedding and aggregation methods, and network fine-tuning strategies. Our survey considers a wide variety of recent methods, whereby we identify milestone work, reveal connections among various methods and present the commonly used benchmarks, evaluation results, common challenges, and propose promising future directions.

cs.CV↗
arXiv2022

K-Means for Noise-Insensitive Multi-Dimensional Feature Learning

Many measurement modalities which perform imaging by probing an object pixel-by-pixel, such as via Photoacoustic Microscopy, produce a multi-dimensional feature (typically a time-domain signal) at each pixel. In principle, the many degrees of freedom in the time-domain signal would admit the possibility of significant multi-modal information being implicitly present, much more than a single scalar "brightness", regarding the underlying targets being observed. However, the measured signal is neither a weighted-sum of basis functions (such as principal components) nor one of a set of prototypes (K-means), which has motivated the novel clustering method proposed here. Signals are clustered based on their shape, but not amplitude, via angular distance and centroids are calculated as the direction of maximal intra-cluster variance, resulting in a clustering algorithm capable of learning centroids (signal shapes) that are related to the underlying, albeit unknown, target characteristics in a scalable and noise-robust manner.

cs.CV↗
arXiv2022

Building Spatio-temporal Transformers for Egocentric 3D Pose Estimation

Egocentric 3D human pose estimation (HPE) from images is challenging due to severe self-occlusions and strong distortion introduced by the fish-eye view from the head mounted camera. Although existing works use intermediate heatmap-based representations to counter distortion with some success, addressing self-occlusion remains an open problem. In this work, we leverage information from past frames to guide our self-attention-based 3D HPE estimation procedure -- Ego-STAN. Specifically, we build a spatio-temporal Transformer model that attends to semantically rich convolutional neural network-based feature maps. We also propose feature map tokens: a new set of learnable parameters to attend to these feature maps. Finally, we demonstrate Ego-STAN's superior performance on the xR-EgoPose dataset where it achieves a 30.6% improvement on the overall mean per-joint position error, while leading to a 22% drop in parameters compared to the state-of-the-art.

cs.CV↗
arXiv2022

Virtual Histological Staining of Label-Free Total Absorption Photoacoustic Remote Sensing (TA-PARS)

Histopathological visualizations are a pillar of modern medicine and biological research. Surgical oncology relies exclusively on post-operative histology to determine definitive surgical success and guide adjuvant treatments. The current histology workflow is based on bright-field microscopic assessment of histochemical stained tissues and has some major limitations. For example, the preparation of stained specimens for brightfield assessment requires lengthy sample processing, delaying interventions for days or even weeks. Hence, there is a pressing need for improved histopathology methods. In this paper, we present a deep-learning-based approach for virtual label-free histochemical staining of total-absorption photoacoustic remote sensing (TA-PARS) images of unstained tissue. TA-PARS provides an array of directly measured label-free contrasts such as scattering and total absorption (radiative and non-radiative), ideal for developing H&E colorizations without the need to infer arbitrary tissue structures. We use a Pix2Pix generative adversarial network (GAN) to develop visualizations analogous to H&E staining from label-free TA-PARS images. Thin sections of human skin tissue were first virtually stained with the TA-PARS, then were chemically stained with H&E producing a one-to-one comparison between the virtual and chemical staining. The one-to-one matched virtually- and chemically- stained images exhibit high concordance validating the digital colorization of the TA-PARS images against the gold standard H&E. TA-PARS images were reviewed by four dermatologic pathologists who confirmed they are of diagnostic quality, and that resolution, contrast, and color permitted interpretation as if they were H&E. The presented approach paves the way for the development of TA-PARS slide-free histology, which promises to dramatically reduce the time from specimen resection to histological imaging.

eess.IV↗
arXiv2022

Time-domain feature extraction for target-specificity in Photoacoustic Remote Sensing Microscopy

Photoacoustic Remote Sensing (PARS) microscopy is an emerging label-free optical absorption imaging modality. PARS operates by capturing nanosecond-scale optical perturbations generated by photoacoustic pressures. These time-domain (TD) modulations are usually projected by amplitude to determine absorption magnitude. However, significant information on the target's material properties is contained within the TD signals. This work proposes a novel clustering method to learn TD features which relate to underlying biomolecule characteristics. This technique identifies features related to constituent biomolecules, enabling single-acquisition virtual tissue labelling. Colorized visualizations of tissue are produced, highlighting specific tissue components. This is demonstrated on freshly resected murine brain tissue, clearly discerning structures including myelinated and unmyelinated neurons (white and gray matter) and nuclear structures.

physics.med-ph↗
arXiv2021

Survey of Deep Learning Methods for Inverse Problems

In this paper we investigate a variety of deep learning strategies for solving inverse problems. We classify existing deep learning solutions for inverse problems into three categories of Direct Mapping, Data Consistency Optimizer, and Deep Regularizer. We choose a sample of each inverse problem type, so as to compare the robustness of the three categories, and report a statistical analysis of their differences. We perform extensive experiments on the classic problem of linear regression and three well-known inverse problems in computer vision, namely image denoising, 3D human face inverse rendering, and object tracking, selected as representative prototypes for each class of inverse problems. The overall results and the statistical analyses show that the solution categories have a robustness behaviour dependent on the type of inverse problem domain, and specifically dependent on whether or not the problem includes measurement outliers. Based on our experimental results, we conclude by proposing the most robust solution category for each inverse problem class.

cs.CV↗
arXiv2021

In vivo functional and structural retina imaging using multimodal photoacoustic remote sensing microscopy and optical coherence tomography

We have developed a multimodal photoacoustic remote sensing (PARS) microscope combined with swept source optical coherence tomography for in vivo, non-contact retinal imaging. Building on the proven strength of multiwavelength PARS imaging, the system is applied for estimating retinal oxygen saturation in the rat retina. The capability of the technology is demonstrated by imaging both microanatomy and the microvasculature of the retina in vivo. To our knowledge this is the first time a non-contact photoacoustic imaging technique is employed for in vivo oxygen saturation measurement in the retina.

physics.med-ph↗
arXiv2021

A Review of Uncertainty Quantification in Deep Learning: Techniques, Applications and Challenges

Uncertainty quantification (UQ) plays a pivotal role in reduction of uncertainties during both optimization and decision making processes. It can be applied to solve a variety of real-world applications in science and engineering. Bayesian approximation and ensemble learning techniques are two most widely-used UQ methods in the literature. In this regard, researchers have proposed different UQ methods and examined their performance in a variety of applications such as computer vision (e.g., self-driving cars and object detection), image processing (e.g., image restoration), medical image analysis (e.g., medical image classification and segmentation), natural language processing (e.g., text classification, social media texts and recidivism risk-scoring), bioinformatics, etc. This study reviews recent advances in UQ methods used in deep learning. Moreover, we also investigate the application of these methods in reinforcement learning (RL). Then, we outline a few important applications of UQ methods. Finally, we briefly highlight the fundamental research challenges faced by UQ methods and discuss the future research directions in this field.

cs.LG↗
arXiv2020

Improving Maximal Safe Brain Tumor Resection with Photoacoustic Remote Sensing Microscopy

Malignant brain tumors are among the deadliest neoplasms with the lowest survival rates of any cancer type. In considering surgical tumor resection, suboptimal extent of resection is linked to poor clinical outcomes and lower overall survival rates. Currently available tools for intraoperative histopathological assessment require an average of 20 minutes processing and are of limited diagnostic quality for guiding surgeries. Consequently, there is an unaddressed need for a rapid imaging technique to guide maximal resection of brain tumors. Working towards this goal, presented here is an all optical non-contact label-free reflection mode photoacoustic remote sensing (PARS) microscope. By using a tunable excitation laser, PARS takes advantage of the endogenous optical absorption peaks of DNA and cytoplasm to achieve virtual contrast analogous to standard hematoxylin and eosin (H and E) staining. In conjunction, a fast 266 nm excitation is used to generate large grossing scans and rapidly assess small fields in real-time with hematoxylin-like contrast. Images obtained using this technique show comparable quality and contrast to the current standard for histopathological assessment of brain tissues. Using the proposed method, rapid, high-throughput, histological-like imaging was achieved in unstained brain tissues, indicating PARS utility for intraoperative guidance to improve extent of surgical resection.

eess.IV↗
arXiv2020

Text Detection and Recognition in the Wild: A Review

Detection and recognition of text in natural images are two main problems in the field of computer vision that have a wide variety of applications in analysis of sports videos, autonomous driving, industrial automation, to name a few. They face common challenging problems that are factors in how text is represented and affected by several environmental conditions. The current state-of-the-art scene text detection and/or recognition methods have exploited the witnessed advancement in deep learning architectures and reported a superior accuracy on benchmark datasets when tackling multi-resolution and multi-oriented text. However, there are still several remaining challenges affecting text in the wild images that cause existing methods to underperform due to there models are not able to generalize to unseen data and the insufficient labeled data. Thus, unlike previous surveys in this field, the objectives of this survey are as follows: first, offering the reader not only a review on the recent advancement in scene text detection and recognition, but also presenting the results of conducting extensive experiments using a unified evaluation framework that assesses pre-trained models of the selected methods on challenging cases, and applies the same evaluation criteria on these techniques. Second, identifying several existing challenges for detecting or recognizing text in the wild images, namely, in-plane-rotation, multi-oriented and multi-resolution text, perspective distortion, illumination reflection, partial occlusion, complex fonts, and special characters. Finally, the paper also presents insight into the potential research directions in this field to address some of the mentioned challenges that are still encountering scene text detection and recognition techniques.

cs.CV↗
arXiv2019

Potential adversarial samples for white-box attacks

Deep convolutional neural networks can be highly vulnerable to small perturbations of their inputs, potentially a major issue or limitation on system robustness when using deep networks as classifiers. In this paper we propose a low-cost method to explore marginal sample data near trained classifier decision boundaries, thus identifying potential adversarial samples. By finding such adversarial samples it is possible to reduce the search space of adversarial attack algorithms while keeping a reasonable successful perturbation rate. In our developed strategy, the potential adversarial samples represent only 61% of the test data, but in fact cover more than 82% of the adversarial samples produced by iFGSM and 92% of the adversarial samples successfully perturbed by DeepFool on CIFAR10.

cs.LG↗
arXiv2019

Deep Learning for Generic Object Detection: A Survey

Object detection, one of the most fundamental and challenging problems in computer vision, seeks to locate object instances from a large number of predefined categories in natural images. Deep learning techniques have emerged as a powerful strategy for learning feature representations directly from data and have led to remarkable breakthroughs in the field of generic object detection. Given this period of rapid evolution, the goal of this paper is to provide a comprehensive survey of the recent achievements in this field brought about by deep learning techniques. More than 300 research contributions are included in this survey, covering many aspects of generic object detection: detection frameworks, object feature representation, object proposal generation, context modeling, training strategies, and evaluation metrics. We finish the survey by identifying promising directions for future research.

cs.CV↗
arXiv2019

Assessing Architectural Similarity in Populations of Deep Neural Networks

Evolutionary deep intelligence has recently shown great promise for producing small, powerful deep neural network models via the synthesis of increasingly efficient architectures over successive generations. Despite recent research showing the efficacy of multi-parent evolutionary synthesis, little has been done to directly assess architectural similarity between networks during the synthesis process for improved parent network selection. In this work, we present a preliminary study into quantifying architectural similarity via the percentage overlap of architectural clusters. Results show that networks synthesized using architectural alignment (via gene tagging) maintain higher architectural similarities within each generation, potentially restricting the search space of highly efficient network architectures.

cs.CV↗
arXiv2018

ProstateGAN: Mitigating Data Bias via Prostate Diffusion Imaging Synthesis with Generative Adversarial Networks

Generative Adversarial Networks (GANs) have shown considerable promise for mitigating the challenge of data scarcity when building machine learning-driven analysis algorithms. Specifically, a number of studies have shown that GAN-based image synthesis for data augmentation can aid in improving classification accuracy in a number of medical image analysis tasks, such as brain and liver image analysis. However, the efficacy of leveraging GANs for tackling prostate cancer analysis has not been previously explored. Motivated by this, in this study we introduce ProstateGAN, a GAN-based model for synthesizing realistic prostate diffusion imaging data. More specifically, in order to generate new diffusion imaging data corresponding to a particular cancer grade (Gleason score), we propose a conditional deep convolutional GAN architecture that takes Gleason scores into consideration during the training process. Experimental results show that high-quality synthetic prostate diffusion imaging data can be generated using the proposed ProstateGAN for specified Gleason scores.

cs.CV↗
arXiv2018

Mitigating Architectural Mismatch During the Evolutionary Synthesis of Deep Neural Networks

Evolutionary deep intelligence has recently shown great promise for producing small, powerful deep neural network models via the organic synthesis of increasingly efficient architectures over successive generations. Existing evolutionary synthesis processes, however, have allowed the mating of parent networks independent of architectural alignment, resulting in a mismatch of network structures. We present a preliminary study into the effects of architectural alignment during evolutionary synthesis using a gene tagging system. Surprisingly, the network architectures synthesized using the gene tagging approach resulted in slower decreases in performance accuracy and storage size; however, the resultant networks were comparable in size and performance accuracy to the non-gene tagging networks. Furthermore, we speculate that there is a noticeable decrease in network variability for networks synthesized with gene tagging, indicating that enforcing a like-with-like mating policy potentially restricts the exploration of the search space of possible network architectures.

cs.CV↗
arXiv2018

From BoW to CNN: Two Decades of Texture Representation for Texture Classification

Texture is a fundamental characteristic of many types of images, and texture representation is one of the essential and challenging problems in computer vision and pattern recognition which has attracted extensive research attention. Since 2000, texture representations based on Bag of Words (BoW) and on Convolutional Neural Networks (CNNs) have been extensively studied with impressive performance. Given this period of remarkable evolution, this paper aims to present a comprehensive survey of advances in texture representation over the last two decades. More than 200 major publications are cited in this survey covering different aspects of the research, which includes (i) problem description; (ii) recent advances in the broad categories of BoW-based, CNN-based and attribute-based methods; and (iii) evaluation issues, specifically benchmark datasets and state of the art results. In retrospect of what has been achieved so far, the survey discusses open challenges and directions for future research.

cs.CV↗