arXiv subjects

Paulo E. Arratia

Publications and source records attributed to Paulo E. Arratia.

At least 37 records · Page 2Linked to original sources

arXiv2022

Polymers in Swarming Bacterial Turbulence

We experimentally investigate the effects of polymer additives on the collective dynamics of swarming Serratia marcescens in quasi two-dimensional (2D) liquid films. We find that even minute amounts of polymers (< 20 ppm) can significantly enhance swimming speed and promote largescale coherent structures. Velocity statistics show that polymers suppress large velocity fluctuation, transforming the velocity distributions from super-Gaussian to Gaussian. Spatial and temporal correlation functions suggest that polymers increase both the size and lifetime of flow structures. The energy spectra show an exponential decay at low wavenumbers, with a characteristic length scale increasing with polymer concentration. Overall, these result show polymers can mediate bacteria interaction and promote large-scale coherence in dense active suspensions.

cond-mat.soft↗

arXiv2022

Flow and aerosol dispersion from wind musical instruments

In the midst of the COVID-19 pandemic, many live musical activities had to be postponed and even canceled to protect musicians and audience. Orchestral ensembles face a particular challenge of contamination because they are personnel heavy and instrumentally diverse. A chief concern is whether wind instruments are vectors of contamination through aerosol dispersion. This study, made possible by the participation of members of the Philadelphia Orchestra, brings insight on the modes of production and early life of aerosols of human origin emitted by wind instruments. We find that these instruments produce aerosol levels that are comparable to normal speech in quantity and size distribution. However, the exit jet flow speeds are much lower than violent expiratory events (coughing, sneezing). For most wind instruments, the flow decays to background indoor-air levels at approximately 2 meters away from the instrument's opening. Long range aerosol dispersion is thus via ambient air currents.

physics.flu-dyn↗

arXiv2021

Spatters and Spills: Spreading Dynamics for Partially Wetting Droplets

We present a solvable model inspired by dimensional analysis for the time-dependent spreading of droplets that partially wet a substrate, where the spreading eventually stops and the contact angle reaches a nonzero equilibrium value. We separately consider small droplets driven by capillarity and large droplets driven by gravity. To explore both regimes, we first measure the equilibrium radius versus a comprehensive range of droplet volumes for four household fluids, and we compare the results with predictions based on minimizing the sum of gravitational and interfacial energies. The agreement is good, and gives a reliable measurement of an equilibrium contact angle that is consistent in both small and large droplet regimes. Next we use energy considerations to develop equations of motion for the time dependence of the spreading, in both regimes, where the driving forces are balanced against viscous drag in the bulk of the droplet and by friction at the moving contact line. Our approach leads to explicit prediction of the functional form of the spreading dynamics. It successfully describes prior data for a small capillary-driven droplet, and it fits well to new data we obtain for large gravity-driven droplets with a wide range of volumes.

physics.flu-dyn↗

arXiv2021

Perspectives on viscoelastic flow instabilities and elastic turbulence

Viscoelastic fluids are a common subclass of rheologically complex materials that are encountered in diverse fields from biology to polymer processing. Often the flows of viscoelastic fluids are unstable in situations where ordinary Newtonian fluids are stable, owing to the nonlinear coupling of the elastic and viscous stresses. Perhaps more surprisingly, the instabilities produce flows with the hallmarks of turbulence -- even though the effective Reynolds numbers may be $O(1)$ or smaller. We provide perspectives on viscoelastic flow instabilities by integrating the input from speakers at a recent international workshop: historical remarks, characterization of fluids and flows, discussion of experimental and simulation tools, and modern questions and puzzles that motivate further studies of this fascinating subject. The materials here will be useful for researchers and educators alike, especially as the subject continues to evolve in both fundamental understanding and applications in engineering and the sciences.

physics.flu-dyn↗

arXiv2021

Bacteria hinder large-scale transport and enhance small-scale mixing in time-periodic flows

Understanding mixing and transport of passive scalars in active fluids is important to many natural (e.g. algal blooms) and industrial (e.g. biofuel, vaccine production) processes. Here, we study the mixing of a passive scalar (dye) in dilute suspensions of swimming Escherichia coli in experiments using a two-dimensional (2D) time-periodic flow and in a simple simulation. Results show that the presence of bacteria hinders large scale transport and reduce overall mixing rate. Stretching fields, calculated from experimentally measured velocity fields, show that bacterial activity attenuates fluid stretching and lowers flow chaoticity. Simulations suggest that this attenuation may be attributed to a transient accumulation of bacteria along regions of high stretching. Spatial power spectra and correlation functions of dye concentration fields show that the transport of scalar variance across scales is also hindered by bacterial activity, resulting in an increase in average size and lifetime of structures. On the other hand, at small scales, activity seems to enhance local mixing. One piece of evidence is that the probability distribution of the spatial concentration gradients is nearly symmetric with a vanishing skewness. Overall, our results show that the coupling between activity and flow can lead to nontrivial effects on mixing and transport.

physics.flu-dyn↗

arXiv2021

Scaling of relaxation and excess entropy in plastically deformed amorphous solids

When stressed sufficiently, solid materials yield and deform plastically via reorganization of microscopic constituents. Indeed, it is possible to alter the micro-structure of materials by judicious application of stress, an empirical pro- cess utilized in practice to enhance the mechanical properties of metals. Un- derstanding the interdependence of plastic flow and microscopic structure in these non-equilibrium states, however, remains a major challenge. Here, we ex- perimentally investigate this relationship, between the relaxation dynamics and microscopic structure of disordered colloidal solids during plastic deformation. We apply oscillatory shear to solid colloidal monolayers and study their particle trajectories as a function of shear rate in the plastic regime. Under these cir- cumstances, the strain rate, the relaxation rate associated with plastic flow, and the sample microscopic structure oscillate together but with different phases. Interestingly, the experiments reveal that the relaxation rate associated with plastic flow at time t is correlated with the strain rate and sample microscopic structure measured at earlier and later times, respectively. The relaxation rate, in this non-stationary condition, exhibits power-law shear-thinning behavior and scales exponentially with sample excess entropy. Thus, measurement of sample static structure (excess entropy) provides insight about both strain-rate and constituent rearrangement dynamics in the sample at earlier times.

cond-mat.soft↗

arXiv2021

Bacterial activity hinders particle sedimentation

Sedimentation in active fluids has come into focus due to the ubiquity of swimming micro-organisms in natural and industrial processes. Here, we investigate sedimentation dynamics of passive particles in a fluid as a function of bacteria E. coli concentration. Results show that the presence of swimming bacteria significantly reduces the speed of the sedimentation front even in the dilute regime, in which the sedimentation speed is expected to be independent of particle concentration. Furthermore, bacteria increase the dispersion of the passive particles, which determines the width of the sedimentation front. For short times, particle sedimentation speed has a linear dependence on bacterial concentration. Mean square displacement data shows, however, that bacterial activity decays over long experimental (sedimentation) times. An advection-diffusion equation coupled to bacteria population dynamics seems to capture concentration profiles relatively well. A single parameter, the ratio of single particle speed to the bacteria flow speed can be used to predict front sedimentation speed.

physics.flu-dyn↗

arXiv2020

Crystalline shielding mitigates structural rearrangement and localizes memory in jammed systems under oscillatory shear

The nature of yield in amorphous materials under stress has yet to be fully elucidated. In particular, understanding how microscopic rearrangement gives rise to macroscopic structural and rheological signatures in disordered systems is vital for the prediction and characterization of yield and for the study of how memory is stored in disordered materials. Here, we investigate the evolution of local structural homogeneity on an individual particle level in amorphous jammed two-dimensional systems under oscillatory shear, and relate this evolution to rearrangement, memory, and macroscale rheological measurements. We identify a new structural metric, crystalline shielding, that is predictive of rearrangement propensity and the structural volatility of individual particles under shear. We use this metric to identify localized regions of the system in which the material's memory of its preparation is preserved. Our results contribute to a growing understanding of how local structure relates to dynamic response and memory in disordered systems.

cond-mat.soft↗

arXiv2019

Formation of stable aggregates by fluid-assembled solid bridges

When a colloidal suspension is dried, capillary pressure may overwhelm repulsive electrostatic forces, assembling aggregates that are out of thermal equilibrium. This poorly understood process confers cohesive strength to many geological and industrial materials. Here we observe evaporation-driven aggregation of natural and synthesized particulates, probe their stability under rewetting, and measure bonding strength using an atomic force microscope. Cohesion arises at a common length scale (~ 5 um), where interparticle attractive forces exceed particle weight. In polydisperse mixtures, smaller particles condense within shrinking capillary bridges to build stabilizing 'solid bridges' among larger grains. This dynamic repeats across scales forming remarkably strong, hierarchical clusters, whose cohesion derives from grain size rather than mineralogy. Results may help to understand and control the stability of natural soils and synthetic materials.

cond-mat.soft↗

arXiv2018

Flow Resistance and Structures in Viscoelastic Channel Flows at Low Re

The flow of viscoelastic fluids in channels and pipes remain poorly understood, particularly at low Reynolds numbers. Here, we investigate the flow of polymeric solutions in straight channels using pressure measurements and particle tracking. The law of flow resistance is established by measuring the flow friction factor $f_η$ versus flow rate. Two regimes are found: a transitional regime marked by rapid increase in drag, and a turbulent-like regime characterized by a sudden decrease in drag and a weak dependence on flow rate. Lagrangian trajectories show finite transverse modulations not seen in Newtonian fluids. These curvature perturbations far downstream can generate sufficient hoop stresses to sustain the flow instabilities in the parallel shear flow.

physics.flu-dyn↗

arXiv2018

The propagation of active-passive interfaces in bacterial swarms

Propagating interfaces are ubiquitous in nature, underlying instabilities and pattern formation in biology and material science. Physical principles governing interface growth are well understood in passive settings; however, our understanding of interfaces in active systems is still in its infancy. Here, we study the evolution of an active-passive interface using a model active matter system, bacterial swarms. We use ultra-violet light exposure to create compact domains of passive bacteria within Serratia marcescens swarms, thereby creating interfaces separating motile and immotile cells. Post-exposure, the boundary re-shapes and erodes due to self-emergent collective flows. We demonstrate that the active-passive boundary acts as a diffuse interface with mechanical properties set by the flow. Intriguingly, interfacial velocity couples to local swarm speed and interface curvature, suggesting that an active analogue to classic Gibbs-Thomson-Stefan conditions controls boundary propagation. Our results generalize interface theories to mixing and segregation in active systems with collective flows.

physics.bio-ph↗

arXiv2017

Shear-Induced Reversibility of quasi-2D Colloids in Presence of Thermal Noise

The effects of thermal noise on particle rearrangements in colloidal suspensions undergoing cyclic shear are experimentally investigated using particle tracking methods. The experimental model system consists of polystyrene particles adsorbed at an oil- water interface, in which the particles exhibit small but non-negligible Brownian motion. We perform experiments on bidisperse (1 and 1.2 $μ$m in size) colloidal samples with area fractions ($ϕ$ ) of 0.20 and 0.32. Reversibility of particle rearrangements are characterized, and we show that unlike dense athermal systems, reversible clusters are not stable; once a particle enters into a reversible trajectory, it has a nonzero probability of becoming irreversible in the following shearing cycle. This probability was previously found to be approximately zero for an analogous athermal system. We demonstrate that the stability of reversibility depends both on packing fraction, $ϕ$ , and the shearing amplitude, $γ_0$. In addition, we identify hysteresis in the dynamics of rearrangements for reversible particles, which indicates that such rearrangements are dissipative. At lower packing fractions, this hysteresis becomes less prominent, and the dynamics is moved closer to equilibrium by thermal noise.

cond-mat.soft↗

arXiv2017

Sedimentation and diffusion of passive particles in suspensions of swimming Escherichia coli

Sedimentation in active fluids has come into focus due to the ubiquity of swimming micro-organisms in natural and artificial environments. Here, we experimentally investigate sedimentation of passive particles in water containing various concentrations of the bacterium E. coli. Results show that the presence of living bacteria reduces the velocity of the sedimentation front even in the dilute regime, where the sedimentation velocity is expected to be independent of particle concentration. Bacteria increase the effective diffusion coefficient of the passive particles, which determines the width of the sedimentation front. For higher bacteria concentration, we find the development of two sedimentation fronts due to bacterial death. A model in which an advection-diffusion equation describing the settling of particles under gravity is coupled to the population dynamics of the bacteria seems to capture the experimental trends relatively well.

physics.flu-dyn↗

arXiv2017

Characterizing Elastic Turbulence in Channel Flows at Low Reynolds number

We experimentally investigate the flow of a viscoelastic fluid in a parallel shear geometry at low Reynolds number. As the flow becomes unstable via a nonlinear subcritical instability, velocimetry measurements show non-periodic fluctuations over a broad range of frequencies and wavelengths, consistent with the main features of elastic turbulence. Using the same experimental setup, we compare these features to those in the flow around cylinders, which is upstream to the parallel shear region; we find significant differences in power spectra scaling, intermittency statistics, and flow structures. We propose a simple mechanism to explain the growth of velocity fluctuations in parallel shear flows based on polymer stretching due to fluctuations in streamwise velocity gradients.

physics.flu-dyn↗

arXiv2016

The cost of swimming in generalized Newtonian fluids: Experiments with C. elegans

Numerous natural processes are contingent on microorganisms' ability to swim through fluids with non-Newtonian rheology. Here, we use the model organism Caenorhabditis elegans and tracking methods to experimentally investigate the dynamics of undulatory swimming in shear-thinning fluids. Theory and simulation have proposed that the cost of swimming, or mechanical power, should be lower in a shear-thinning fluid compared to a Newtonian fluid of the same zero-shear viscosity. We aim to provide an experimental investigation into the cost of swimming in a shear-thinning fluid from (i) an estimate of the mechanical power of the swimmer and (ii) the viscous dissipation rate of the flow field, which should yield equivalent results for a self-propelled low Reynolds number swimmer. We find the cost of swimming in shear-thinning fluids is less than or equal to the cost of swimming in Newtonian fluids of the same zero-shear viscosity; furthermore, the cost of swimming in shear-thinning fluids scales with a fluid's effective viscosity and can be predicted using fluid rheology and simple swimming kinematics. Our results agree reasonably well with previous theoretical predictions and provide a framework for understanding the cost of swimming in generalized Newtonian fluids.

physics.flu-dyn↗

arXiv2016

Flow analysis of the low-Reynolds number swimmer C. elegans

Swimming cells and microorganisms are a critical component of many biological processes. In order to better interpret experimental studies of low Reynolds number swimming, we combine experimental and numerical methods to perform an analysis of the flow-field around the swimming nematode Caenorhabditis elegans. We first use image processing and particle tracking velocimetry to extract the body shape, kinematics, and flow-fields around the nematode. We then construct a three-dimensional model using the experimental swimming kinematics and employ a boundary element method to simulate flow-fields, obtaining very good quantitative agreement with experiment. We use this numerical model to show that calculation of flow shear rates using purely planar data results in significant underestimates of the true three-dimensional value. Applying symmetry arguments, validated against numerics, we demonstrate that the out-of-plane contribution can be accounted for via incompressibility and therefore simply calculated from particle tracking velocimetry. Our results show how fundamental fluid mechanics considerations may be used to improve the accuracy of measurements in biofluiddynamics.

physics.flu-dyn↗

arXiv2016

Active colloids in complex fluids

We review recent work on active colloids or swimmers, such as self-propelled microorganisms, phoretic colloidal particles, and artificial micro-robotic systems, moving in fluid-like environments. These environments can be water-like and Newtonian but can frequently contain macromolecules, flexible polymers, soft cells, or hard particles, which impart complex, nonlinear rheological features to the fluid. While significant progress has been made on understanding how active colloids move and interact in Newtonian fluids, little is known on how active colloids behave in complex and non-Newtonian fluids. An emerging literature is starting to show how fluid rheology can dramatically change the gaits and speeds of individual swimmers. Simultaneously, a moving swimmer induces time dependent, three dimensional fluid flows, that can modify the medium (fluid) rheological properties. This two-way, non-linear coupling at microscopic scales has profound implications at meso- and macro-scales: steady state suspension properties, emergent collective behavior, and transport of passive tracer particles. Recent exciting theoretical results and current debate on quantifying these complex active fluids highlight the need for conceptually simple experiments to guide our understanding.

physics.bio-ph↗

arXiv2015

Particle diffusion in active fluids is non-monotonic in size

We experimentally investigate the effect of particle size on the motion of passive polystyrene spheres in suspensions of Escherichia coli. Using particles covering a range of sizes from 0.6 to 39 microns, we probe particle dynamics at both short and long time scales. In all cases, the particles exhibit super-diffusive ballistic behavior at short times before eventually transitioning to diffusive behavior. Surprisingly, we find a regime in which larger particles can diffuse faster than smaller particles: the particle long-time effective diffusivity exhibits a peak in particle size, which is a deviation from classical thermal diffusion. We also find that the active contribution to particle diffusion is controlled by a dimensionless parameter, the Peclet number. A minimal model qualitatively explains the existence of the effective diffusivity peak and its dependence on bacterial concentration. Our results have broad implications on characterizing active fluids using concepts drawn from classical thermodynamics.

physics.bio-ph↗