arXiv subjects

Pavel Jelinek

Publications and source records attributed to Pavel Jelinek.

At least 19 recordsLinked to original sources

arXiv2026

Cotunneling theory and multiplet excitations: emergence of asymmetric line shape in inelastic scanning tunneling spectroscopy of correlated molecules on surfaces

Recent advances in on-surface chemistry, combined with scanning probe microscopy, have enabled the synthesis of correlated molecules on surfaces and the characterization of their chemical and electronic properties with unprecedented spatial resolution. Low-energy magnetic excitations of individual molecules are frequently investigated by scanning tunneling spectroscopy (STS) and often appear as symmetric step-like features in the differential conductance as a function of bias voltage. The interpretation of such steps is well established within cotunneling theory and effective model Hamiltonians (e.g., Hubbard- and spin-based models). Here, we extend the cotunneling formalism to general multireference systems. We show that multireference character, together with orbital-dependent and strongly asymmetric tip/substrate couplings, can produce pronounced asymmetric line shapes in inelastic STS. These results provide an alternative microscopic mechanism for the asymmetric peaks and dips near the Fermi level frequently observed in STS experiments.

cond-mat.mes-hall↗

arXiv2026

Strongly entangled Quantum Spin Rings driven by H\"uckel rule

Quantum spin rings represent an intriguing platform for studying unconventional magnetic order and exotic quantum phases, and they are also promising materials for emerging quantum technologies. Conventional spin systems consist of a set of weakly interacting localized spins that are well described by the Heisenberg spin models. Here, we demonstrate that strong interactions between radical centers in macrocycles of different sizes lead to fluctuations in the total number of unpaired electrons and to non-trivial antiferromagnetic order that extends beyond the Heisenberg picture. We demonstrate that the electronic structure of these spin rings is governed by the concept of 4n/4n+2 H\"uckel (anti)aromaticity for even-membered rings, whereas odd-membered rings possess a highly degenerate frustrated magnetic ground state. The strongly coupled spin rings are experimentally realized through the on-surface synthesis of {\pi}-magnetic carbon-based macrocycles, which consist of [2]triangulene units. The close correlation between the electronic structure and the H\"uckel aromaticity rule is revealed by scanning tunneling spectroscopy and multireference calculations. This work establishes a novel design principle employing the concept of H\"uckel aromaticity for quantum spin macrocycles.

cond-mat.mes-hall↗

arXiv2026

Quantum Spin-1/2 Rings Built from [2]Triangulene Molecular Units

Quantum spin rings represent fundamental model systems that exhibit distinctive quantum phenomena-such as quantum critical behavior and quasiparticle excitations-arising from their periodic boundary conditions and enhanced quantum fluctuations. Here, we report the on-surface synthesis and atomic-scale characterization of antiferromagnetic S=1/2 quantum spin rings composed of pristine and unmodified [2]triangulene units on a Au(111) surface. Using stepwise on-surface synthesis followed by STM tip-induced dehydrogenation, we precisely constructed cyclic five- and six-membered spin rings and investigated their spin states via scanning probe microscopy and multireference calculations. Nc-AFM imaging reveals that the six-membered ring retains a planar geometry, whereas the five-membered ring exhibits pronounced structural distortion. The six-membered ring hosts a uniform excitation gap that can be accurately described by a Heisenberg spin model and multireference CASCI calculations. In contrast, the distorted five-membered ring displays spin ground states with asymmetric spatial distributions due to degeneracy lifting induced by structural distortion. Our findings establish a versatile molecular platform for exploring correlated magnetism and quantum spin phenomena in cyclic organic magnetic architectures with disorder.

cond-mat.mtrl-sci↗

arXiv2025

Adsorption-induced surface magnetism

We report the emergence of adsorption-induced magnetism from heterohelicene molecules on a non-magnetic Cu(100) surface. Spin-polarized low-energy electron microscopy (SP-LEEM) measurements reveal spin-dependent electron reflectivity for enantiopure 7,12,17-trioxa[11]helicene (TO[11]H) monolayers, indicating the formation of a spin-polarized state localized in the topmost copper layer. Control experiments on clean Cu(100) and TO[11]H on highly oriented pyrolytic graphite show no such effect, excluding artifacts and chirality-induced spin selectivity as origins. Spin-polarized density functional theory calculations with hybrid functionals attribute the magnetism to strong chemisorption, which induces hybridization between the molecular HOMO and copper s- and d-states, driving asymmetric spin-polarized charge redistribution at the interface. An extended Newns-Anderson-Grimley model incorporating on-site Coulomb repulsion in Cu d-orbitals reproduces the emergence of interfacial spin polarization above a threshold interaction strength, highlighting the key roles of hybridization parameters and Coulomb correlation. These findings reveal a mechanism for inducing magnetism at molecule-metal interfaces without inherently magnetic components, offering avenues for engineering spin-polarized states in organic-inorganic hybrid systems.

cond-mat.mtrl-sci↗

arXiv2025

Designer polyradical nanographenes with strong spin entanglement and perturbation resilience via Clar's goblet extension

Polyradical nanographenes featuring strong spin entanglement and robust many-body spin states against external magnetic perturbations not only enable the exploration of correlated quantum magnetism at the molecular scale, but also constitute promising candidates for developing molecular qubits with chemical tunability and building scalable quantum networks. Here, we employed a predictive design strategy to achieve the on-surface synthesis of two homologues of Clar goblet, C62H22 and C76H26, via lateral and vertical extensions of the parent structure, respectively. Vertical extension increases the number of topologically frustrated zero-energy modes, which scale linearly with the total number of benzene ring rows. In contrast, the lateral extension enhances electron-electron interactions, leading to the emergence of additional radical states beyond those predicted by the topological zero-energy modes. Consequently, both structures exhibit correlated tetraradical character and a many-body singlet ground state as confirmed by multireference theoretical calculations. These magnetic states arise from unique magnetic origins and also display distinct resilience to external perturbations, which can be experimentally validated using nickelocene-functionalized scanning probe techniques. Our work presents a general strategy for rational design of highly entangled polyradical nanographenes with tunable spin numbers and resilience of their many-body spin states to perturbations, opening exciting possibilities for exploring novel correlated spin phases in molecular systems and advancing quantum information technologies.

cond-mat.mes-hall↗

arXiv2025

Theory of scanning tunneling spectroscopy beyond one-electron molecular orbitals: can we image molecular orbitals?

The interpretation of experimental spatially resolved scanning tunneling spectroscopy (STS) maps of close-shell molecules on surfaces is usually interpreted within the framework of oneelectron molecular orbitals. Although this standard practice often gives relatively good agreement with experimental data, it contradicts one of the basic assumptions of quantum mechanics, postulating the impossibility of direct observation of the wavefunction, i.e., individual molecular orbitals. The scanning probe community often considers this contradiction about observing molecular orbitals as a philosophical question rather than a genuine problem. Moreover, in the case of polyradical strongly correlated molecules, the interpretation of STS maps based on one-electron molecular orbitals often fails. Thus, for a precise interpretation of STS maps and their connection to the electronic structure of molecules, a theoretical description, including non-equilibrium tunneling processes going beyond one-electron process, is required. In this contribution, we first show why, in selected cases, it is possible to achieve good agreement with experimental data based on one-electron canonical molecular orbitals and Tersoff-Hamann approximation. Next, we will show that for an accurate interpretation of strongly correlated molecules, it is necessary to describe the process of removing/adding an electron within the formalism of many-electron wavefunctions for the neutral and charged states. This can be accomplished by the concept of so-called Dyson orbitals.

cond-mat.mtrl-sci↗

arXiv2023

Selective Activation of Aromatic C-H Bonds Catalyzed by Single Gold Atoms at Room Temperature

Selective activation and controlled functionalization of C-H bonds in organic molecules is one of the most desirable processes in synthetic chemistry. Despite progress in heterogeneous catalysis using metal surfaces, this goal remains challenging due to the stability of C-H bonds and their ubiquity in precursor molecules, hampering regioselectivity. Here, we examine the interaction between 9,10-dicyanoanthracene (DCA) molecules and Au adatoms on a Ag(111) surface at room temperature (RT). Characterization via low-temperature scanning tunneling microscopy, spectroscopy, and noncontact atomic force microscopy, supported by theoretical calculations, revealed the formation of organometallic DCA-Au-DCA dimers, where C atoms at the ends of the anthracene moieties are bonded covalently to single Au atoms. The formation of this organometallic compound is initiated by a regioselective cleaving of C-H bonds at RT. Hybrid quantum mechanics/molecular mechanics calculations show that this regioselective C-H bond cleaving is enabled by an intermediate metal-organic complex which significantly reduces the dissociation barrier of a specific C-H bond. Harnessing the catalytic activity of single metal atoms, this regioselective on-surface C-H activation reaction at RT offers promising routes for future synthesis of functional organic and organometallic materials.

physics.chem-ph↗

arXiv2023

Highly-Entangled Polyradical Nanographene with Coexisting Strong Correlation and Topological Frustration

Open-shell benzenoid polycyclic aromatic hydrocarbons, known as magnetic nanographenes, exhibit unconventional p-magnetism arising from topological frustration or strong electronic-electron (e-e) interaction. Imprinting multiple strongly entangled spins into polyradical nanographenes creates a major paradigm shift in realizing non-trivial collective quantum behaviors and exotic quantum phases in organic quantum materials. However, conventional design approaches are limited by a single magnetic origin, which can restrict the number of correlated spins or the type of magnetic ordering in open-shell nanographenes. Here, we present a novel design strategy combing topological frustration and e-e interactions to fabricate the largest fully-fused open-shell nanographene reported to date, a 'butterfly'-shaped tetraradical on Au(111). We employed bond-resolved scanning tunneling microscopy and spin excitation spectroscopy to unambiguously resolve the molecular backbone and reveal the strongly correlated open-shell character, respectively. This nanographene contains four unpaired electrons with both ferromagnetic and anti-ferromagnetic interactions, harboring a many-body singlet ground state and strong multi-spin entanglement, which can be well described by many-body calculations. Furthermore, we demonstrate that the nickelocene magnetic probe can sense highly-correlated spin states in nanographene. The ability to imprint and characterize many-body strongly correlated spins in polyradical nanographenes not only presents exciting opportunities for realizing non-trivial quantum magnetism and phases in organic materials but also paves the way toward high-density ultrafast spintronic devices and quantum information technologies.

cond-mat.mtrl-sci↗

arXiv2022

Designer magnetic topological graphene nanoribbons

The interplay of magnetism and topology lies at the heart of condensed matter physics, which offers great opportunities to design intrinsic magnetic topological materials hosting a variety of exotic topological quantum states including the quantum anomalous Hall effect (QAHE), axion insulator state, and Majorana bound states. Extending this concept to one-dimension (1D) systems offers additional rich quantum spin physics with great promise for molecular-scale spintronics. Despite recent progress in the discovery of symmetry-protected topological quantum phases in 1D graphene nanoribbons (GNRs), the rational design and realization of magnetic topological GNRs (MT-GNRs) represents a grand challenge, as one must tackle multiple dimensions of complexity including time-reversal symmetry (TRS), spatial symmetry (width, edge, end geometry) and many-electron correlations. Here, we devised a new route involving the real- and reciprocal-space descriptions by unifying the chemists and physicists perspectives, for the design of such MT-GNRs with non-trivial electronic topology and robust magnetic terminal. Classic Clar's rule offers a conceptually qualitative real-space picture to predict the transition from closed-shell to open-shell with terminal magnetism, and band gap reopening with possible non-trivial electronic topology in a series of wave-like GNRs, which are further verified by first principle calculations of band-structure topology in a momentum-space. With the advance of on-surface synthesis and careful design of molecular precursors, we have fabricated these MT-GNRs with observation of topological edge bands, whose terminal pi-magnetism can be directly captured using a single-nickelocene spin sensor. Moreover, the transition from strong anti-ferromagnetic to weak coupling (paramagnetism-like) between terminal spins can be controlled by tuning the length of MT-GNRs.

cond-mat.mes-hall↗

arXiv2022

Z3 Charge Density Wave of Silicon Atomic Chains on a Vicinal Silicon Surface

An ideal one-dimensional electronic system is formed along atomic chains on Au-decorated vicinal silicon surfaces but the nature of its low temperature phases has been puzzled for last two decades. Here, we unambiguously identify the low temperature structural distortion of this surface using high resolution atomic force microscopy and scanning tunneling microscopy. The most important structural ingredient of this surface, the step-edge Si chains are found to be strongly buckled, every third atoms down, forming trimer unitcells. This observation is consistent with the recent model of rehybridized dangling bonds and rules out the antiferromagnetic spin ordering proposed earlier. The spectroscopy and electronic structure calculation indicate a charge density wave insulator with a Z3 topology making it possible to exploit topological phases and excitations. Tunneling current was found to substantially lower the energy barrier between three degenerate CDW states, which induces a dynamically fluctuating CDW at very low temperature.

cond-mat.mtrl-sci↗

arXiv2021

Creation and annihilation of mobile fractional solitons in atomic chains

Localized modes in one dimensional topological systems, such as Majonara modes in topological superconductors, are promising platforms for robust information processing. In one dimensional topological insulators, mobile topological solitons are expected but have not been fully realized yet. We discover fractionalized phase defects moving along trimer silicon atomic chains formed along step edges of a vicinal silicon surface. Tunneling microscopy identifies local defects with phase shifts of 2{\pi}/3 and 4{\pi}/3 with their electronic states within the band gap and with their motions activated above 100 K. Theoretical calculations reveal the topological soliton origin of the phase defects with fractional charges of {\pm}2e/3 and {\pm}4e/3. An individual soliton can be created and annihilated at a desired location by current pulse from the probe tip. Mobile and manipulatable topological solitons discovered here provide a new platform of robustly-protected informatics with extraordinary functionalities.

cond-mat.mtrl-sci↗

arXiv2021

Theory of Chirality Induced Spin Selectivity: Progress and Challenges

We provide a critical overview of the theory of the chirality-induced spin selectivity (CISS) effect, i.e., phenomena in which the chirality of molecular species imparts significant spin selectivity to various electron processes. Based on discussions in a recently held workshop, and further work published since, we review the status of CISS effects - in electron transmission, electron transport, and chemical reactions. For each, we provide a detailed discussion of the state-of-the-art in theoretical understanding and identify remaining challenges and research opportunities.

cond-mat.mtrl-sci↗

arXiv2021

Circumventing the Stability Problems of Graphene Nanoribbon Zigzag Edges

Carbon nanostructures with zigzag edges exhibit unique properties with exciting potential applications. Such nanostructures are generally synthesized under vacuum because their zigzag edges are unstable under ambient conditions: a barrier that must be surmounted to achieve their scalable exploitation. Here, we prove the viability of chemical protection/deprotection strategies for this aim, demonstrated on labile chiral graphene nanoribbons (chGNRs). Upon hydrogenation, the chGNRs survive an exposure to air, after which they are easily converted back to their original structure via annealing. We also approach the problem from another angle by synthesizing a chemically stable oxidized form of the chGNRs that can be converted to the pristine hydrocarbon form via hydrogenation and annealing. These findings may represent an important step toward the integration of zigzag-edged nanostructures in devices.

cond-mat.mtrl-sci↗

arXiv2021

Atomic scale control and visualization of topological quantum phase transition in {\pi}-conjugated polymers driven by their length

Quantum phase transitions, which are driven by quantum fluctuations, mark a frontier between distinct quantum phases of matter. However, our understanding and control of such phenomena is still limited. Here we report an atomic scale control of quantum phase transition between two different topological quantum classes of a well-defined {\pi}-conjugated polymer controlled by their length. We reveal that a pseudo Jahn-Teller effect is the driving mechanism of the phase transition, being activated above a certain polymer chain length. In addition, our theoretical calculations indicate the presence of long-time coherent fluctuations at finite temperature between the two quantum phases of the polymer near the phase transition. This work may pave new ways to achieve atomic scale control of quantum phase transitions, in particular in organic matter.

cond-mat.mes-hall↗

arXiv2020

Controlling the stereospecific bonding motif of Au-thiolate links

Organosulfur compounds at the interface to noble metals have proved over the last decades to be extremely versatile systems for both fundamental and applied research. However, the anchoring of thiols to gold remained an object of controversy for long times. The RS-Au-SR linkage, in particular, is a robust bonding configuration that displays interesting properties. It is generated spontaneously at room temperature and can be used for the production of extended molecular nanostructures. In this work we explore the behavior of 1,4-Bis(4-mercaptophenyl)benzene (BMB) on the Au(111) surface, which results in the formation of 2D crystalline metal-organic assemblies stabilized by this type of Au-thiolate bonds. We show how to control the thiolates stereospecific bonding motif and thereby choose whether to form ordered arrays of Au3BMB3 units with embedded triangular nanopores, or linearly stacked metal-organic chains. The former turn out to be the thermodynamically favored structures and display confinement of the underneath Au(111) surface state. The electronic properties of single molecules as well as of the 2D crystalline self-assemblies have been characterized both on the metal-organic backbone and inside the associated pores.

cond-mat.mtrl-sci↗

arXiv2018

On-Surface Structural and Electronic Properties of Spontaneously Formed Tb$_2$Pc$_3$ Single Molecule Magnets

The single molecule magnet (SMM) bis(phthalocyaninato)terbium (III) (TbPc$_2$) has attracted steady research attention as an exemplar system for realizing molecule-based spin electronics. In this paper, we report on the spontaneous formation of Tb$_2$Pc$_3$ species from TbPc$_2$ precursors via sublimation in ultrahigh vacuum (UHV) onto an Ag(111) surface. The molecules on the surface are inspected using combined scanning tunneling (STM) and non-contact atomic force microscopies (nc-AFM) at 5 Kelvin. Submolecular resolution and height dependent measurements supported by density functional theory (DFT) calculations unambiguously show the presence of both TbPc$_2$ and Tb$_2$Pc$_3$ species. The synthesis of Tb$_2$Pc$_3$ species under UHV conditions is independently confirmed by chemical analysis. The high-resolution AFM imaging allows us to register the orientation of the topmost Pc ligand in both Tb$_2$Pc$_3$ and TbPc$_2$ relative to the underlying Ag(111) surface. Measurements of the electronic structure reveal the selective appearance of a Kondo signature with temperature $\sim$ 30K in the Tb$_2$Pc$_3$ species, localized to the Pc ligand lobes. We attribute the presence of the Kondo resonance on select Tb$_2$Pc$_3$ molecules to the orientation of internal molecular ligands. High-resolution AFM imaging identifies geometric distortions between Tb$_2$Pc$_3$ molecules with and without the Kondo effect, the result of the complex interplay between structural and electronic differences.

cond-mat.mes-hall↗

arXiv2018

Iron-based trinuclear metal-organic nanostructures on a surface with local charge accumulation

Coordination chemistry relies on harnessing active metal sites within organic matrices. Polynuclear complexes - consisting of organic ligands binding to clusters of several metal atoms are of particular interest, owing to their electronic/magnetic properties and potential for functional reactivity pathways. However, their synthesis remains challenging; only a limited number of geometries and configurations have been achieved. Here, we synthesise - via supramolecular chemistry on a noble metal surface - one-dimensional metal-organic nanostructures composed of terpyridine (tpy)-based molecules coordinated with well-defined polynuclear iron clusters. By a combination of low-temperature scanning probe microscopy techniques and density functional theory, we demonstrate that the coordination motif consists of coplanar tpy's linked via a linear tri-iron node in a mixed (positive) valence, metal-metal bond configuration. This unusual linkage is stabilized by a local accumulation of electrons at the interface between cations, ligand and surface. The latter, enabled by the bottom-up on-surface synthesis, hints at a chemically active metal centre, and opens the door to the engineering of nanomaterials with novel catalytic and magnetic functionalities.

cond-mat.mes-hall↗

arXiv2014

The mechanism of high-resolution STM/AFM imaging with functionalized tips

High resolution Atomic Force Microscopy (AFM) and Scanning Tunnelling Microscopy (STM) imaging with functionalized tips is well established, but a detailed understanding of the imaging mechanism is still missing. We present a numerical STM/AFM model, which takes into account the relaxation of the probe due to the tip-sample interaction. We demonstrate that the model is able to reproduce very well not only the experimental intra- and intermolecular contrasts, but also their evolution upon tip approach. At close distances, the simulations unveil a significant probe particle relaxation towards local minima of the interaction potential. This effect is responsible for the sharp sub-molecular resolution observed in AFM/STM experiments. In addition, we demonstrate that sharp apparent intermolecular bonds should not be interpreted as true hydrogen bonds, in the sense of representing areas of increased electron density. Instead they represent the ridge between two minima of the potential energy landscape due to neighbouring atoms.

cond-mat.mes-hall↗