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Paweł Gawrychowski

Publications and source records attributed to Paweł Gawrychowski.

At least 37 records · Page 2Linked to original sources
arXiv2023

Optimal Square Detection Over General Alphabets

Squares (fragments of the form $xx$, for some string $x$) are arguably the most natural type of repetition in strings. The basic algorithmic question concerning squares is to check if a given string of length $n$ is square-free, that is, does not contain a fragment of such form. Main and Lorentz [J. Algorithms 1984] designed an $\mathcal{O}(n\log n)$ time algorithm for this problem, and proved a matching lower bound assuming the so-called general alphabet, meaning that the algorithm is only allowed to check if two characters are equal. However, their lower bound also assumes that there are $Ω(n)$ distinct symbols in the string. As an open question, they asked if there is a faster algorithm if one restricts the size of the alphabet. Crochemore [Theor. Comput. Sci. 1986] designed a linear-time algorithm for constant-size alphabets, and combined with more recent results his approach in fact implies such an algorithm for linearly-sortable alphabets. Very recently, Ellert and Fischer [ICALP 2021] significantly relaxed this assumption by designing a linear-time algorithm for general ordered alphabets, that is, assuming a linear order on the characters that permits constant time order comparisons. However, the open question of Main and Lorentz from 1984 remained unresolved for general (unordered) alphabets. In this paper, we show that testing square-freeness of a length-$n$ string over general alphabet of size $σ$ can be done with $\mathcal{O}(n\log σ)$ comparisons, and cannot be done with $o(n\log σ)$ comparisons. We complement this result with an $\mathcal{O}(n\log σ)$ time algorithm in the Word RAM model. Finally, we extend the algorithm to reporting all the runs (maximal repetitions) in the same complexity.

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arXiv2023

Optimal Heaviest Induced Ancestors

We revisit the Heaviest Induced Ancestors (HIA) problem that was introduced by Gagie, Gawrychowski, and Nekrich [CCCG 2013] and has a number of applications in string algorithms. Let $T_1$ and $T_2$ be two rooted trees whose nodes have weights that are increasing in all root-to-leaf paths, and labels on the leaves, such that no two leaves of a tree have the same label. A pair of nodes $(u, v)\in T_1 \times T_2$ is \emph{induced} if and only if there is a label shared by leaf-descendants of $u$ and $v$. In an HIA query, given nodes $x \in T_1$ and $y \in T_2$, the goal is to find an induced pair of nodes $(u, v)$ of the maximum total weight such that $u$ is an ancestor of~$x$ and $v$ is an ancestor of $y$. Let $n$ be the upper bound on the sizes of the two trees. It is known that no data structure of size $\tilde{\mathcal{O}}(n)$ can answer HIA queries in $o(\log n / \log \log n)$ time [Charalampopoulos, Gawrychowski, Pokorski; ICALP 2020]. This (unconditional) lower bound is a $\operatorname{polyloglog} n$ factor away from the query time of the fastest $\tilde{\mathcal{O}}(n)$-size data structure known to date for the HIA problem [Abedin, Hooshmand, Ganguly, Thankachan; Algorithmica 2022]. In this work, we resolve the query-time complexity of the HIA problem for the near-linear space regime by presenting a data structure that can be built in $\tilde{\mathcal{O}}(n)$ time and answers HIA queries in $\mathcal{O}(\log n/\log\log n)$ time. As a direct corollary, we obtain an $\tilde{\mathcal{O}}(n)$-size data structure that maintains the LCS of a static string and a dynamic string, both of length at most $n$, in time optimal for this space regime. The main ingredients of our approach are fractional cascading and the utilization of an $\mathcal{O}(\log n/ \log\log n)$-depth tree decomposition.

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arXiv2023

Order-Preserving Squares in Strings

An order-preserving square in a string is a fragment of the form $uv$ where $u\neq v$ and $u$ is order-isomorphic to $v$. We show that a string $w$ of length $n$ over an alphabet of size $σ$ contains $\mathcal{O}(σn)$ order-preserving squares that are distinct as words. This improves the upper bound of $\mathcal{O}(σ^{2}n)$ by Kociumaka, Radoszewski, Rytter, and Waleń [TCS 2016]. Further, for every $σ$ and $n$ we exhibit a string with $Ω(σn)$ order-preserving squares that are distinct as words, thus establishing that our upper bound is asymptotically tight. Finally, we design an $\mathcal{O}(σn)$ time algorithm that outputs all order-preserving squares that occur in a given string and are distinct as words. By our lower bound, this is optimal in the worst case.

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arXiv2022

Sublinear Dynamic Interval Scheduling (on one or multiple machines)

We revisit the complexity of the classical Interval Scheduling in the dynamic setting. In this problem, the goal is to maintain a set of intervals under insertions and deletions and report the size of the maximum size subset of pairwise disjoint intervals after each update. Nontrivial approximation algorithms are known for this problem, for both the unweighted and weighted versions [Henzinger, Neumann, Wiese, SoCG 2020]. Surprisingly, it was not known if the general exact version admits an exact solution working in sublinear time, that is, without recomputing the answer after each update. Our first contribution is a structure for Dynamic Interval Scheduling with amortized $\tilde{\mathcal{O}}(n^{1/3})$ update time. Then, building on the ideas used for the case of one machine, we design a sublinear solution for any constant number of machines: we describe a structure for Dynamic Interval Scheduling on $m\geq 2$ machines with amortized $\tilde{\mathcal{O}}(n^{1 - 1/m})$ update time. We complement the above results by considering Dynamic Weighted Interval Scheduling on one machine, that is maintaining (the weight of) the maximum weight subset of pairwise disjoint intervals. We show an almost linear lower bound (conditioned on the hardness of Minimum Weight $k$-Clique) for the update/query time of any structure for this problem. Hence, in the weighted case one should indeed seek approximate solutions.

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arXiv2022

The Theory of Universal Graphs for Infinite Duration Games

We introduce the notion of universal graphs as a tool for constructing algorithms solving games of infinite duration such as parity games and mean payoff games. In the first part we develop the theory of universal graphs, with two goals: showing an equivalence and normalisation result between different recently introduced related models, and constructing generic value iteration algorithms for any positionally determined objective. In the second part we give four applications: to parity games, to mean payoff games, to a disjunction between a parity and a mean payoff objective, and to disjunctions of several mean payoff objectives. For each of these four cases we construct algorithms achieving or improving over the best known time and space complexity.

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arXiv2022

Matching Patterns with Variables Under Edit Distance

A pattern $α$ is a string of variables and terminal letters. We say that $α$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $α$ by terminal words. The matching problem, i.e., deciding whether a given pattern matches a given word, was heavily investigated: it is NP-complete in general, but can be solved efficiently for classes of patterns with restricted structure. If we are interested in what is the minimum Hamming distance between $w$ and any word $u$ obtained by replacing the variables of $α$ by terminal words (so matching under Hamming distance), one can devise efficient algorithms and matching conditional lower bounds for the class of regular patterns (in which no variable occurs twice), as well as for classes of patterns where we allow unbounded repetitions of variables, but restrict the structure of the pattern, i.e., the way the occurrences of different variables can be interleaved. Moreover, under Hamming distance, if a variable occurs more than once and its occurrences can be interleaved arbitrarily with those of other variables, even if each of these occurs just once, the matching problem is intractable. In this paper, we consider the problem of matching patterns with variables under edit distance. We still obtain efficient algorithms and matching conditional lower bounds for the class of regular patterns, but show that the problem becomes, in this case, intractable already for unary patterns, consisting of repeated occurrences of a single variable interleaved with terminals.

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arXiv2022

The Dynamic k-Mismatch Problem

The text-to-pattern Hamming distances problem asks to compute the Hamming distances between a given pattern of length $m$ and all length-$m$ substrings of a given text of length $n\ge m$. We focus on the $k$-mismatch version of the problem, where a distance needs to be returned only if it does not exceed a threshold $k$. We assume $n\le 2m$ (in general, one can partition the text into overlapping blocks). In this work, we show data structures for the dynamic version of this problem supporting two operations: An update performs a single-letter substitution in the pattern or the text, and a query, given an index $i$, returns the Hamming distance between the pattern and the text substring starting at position $i$, or reports that it exceeds $k$. First, we show a data structure with $\tilde{O}(1)$ update and $\tilde{O}(k)$ query time. Then we show that $\tilde{O}(k)$ update and $\tilde{O}(1)$ query time is also possible. These two provide an optimal trade-off for the dynamic $k$-mismatch problem with $k \le \sqrt{n}$: we prove that, conditioned on the strong 3SUM conjecture, one cannot simultaneously achieve $k^{1-Ω(1)}$ time for all operations. For $k\ge \sqrt{n}$, we give another lower bound, conditioned on the Online Matrix-Vector conjecture, that excludes algorithms taking $n^{1/2-Ω(1)}$ time per operation. This is tight for constant-sized alphabets: Clifford et al. (STACS 2018) achieved $\tilde{O}(\sqrt{n})$ time per operation in that case, but with $\tilde{O}(n^{3/4})$ time per operation for large alphabets. We improve and extend this result with an algorithm that, given $1\le x\le k$, achieves update time $\tilde{O}(\frac{n}{k} +\sqrt{\frac{nk}{x}})$ and query time $\tilde{O}(x)$. In particular, for $k\ge \sqrt{n}$, an appropriate choice of $x$ yields $\tilde{O}(\sqrt[3]{nk})$ time per operation, which is $\tilde{O}(n^{2/3})$ when no threshold $k$ is provided.

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arXiv2022

Cut query algorithms with star contraction

We study the complexity of determining the edge connectivity of a simple graph with cut queries. We show that (i) there is a bounded-error randomized algorithm that computes edge connectivity with $O(n)$ cut queries, and (ii) there is a bounded-error quantum algorithm that computes edge connectivity with $Õ(\sqrt{n})$ cut queries. We prove these results using a new technique called "star contraction" to randomly contract edges of a graph while preserving non-trivial minimum cuts. In star contraction vertices randomly contract an edge incident on a small set of randomly chosen vertices. In contrast to the related 2-out contraction technique of Ghaffari, Nowicki, and Thorup [SODA'20], star contraction only contracts vertex-disjoint star subgraphs, which allows it to be efficiently implemented via cut queries. The $O(n)$ bound from item (i) was not known even for the simpler problem of connectivity, and improves the $O(n\log^3 n)$ bound by Rubinstein, Schramm, and Weinberg [ITCS'18]. The bound is tight under the reasonable conjecture that the randomized communication complexity of connectivity is $Ω(n\log n)$, an open question since the seminal work of Babai, Frankl, and Simon [FOCS'86]. The bound also excludes using edge connectivity on simple graphs to prove a superlinear randomized query lower bound for minimizing a symmetric submodular function. Item (ii) gives a nearly-quadratic separation with the randomized complexity and addresses an open question of Lee, Santha, and Zhang [SODA'21]. The algorithm can also be viewed as making $Õ(\sqrt{n})$ matrix-vector multiplication queries to the adjacency matrix. Finally, we demonstrate the use of star contraction outside of the cut query setting by designing a one-pass semi-streaming algorithm for computing edge connectivity in the vertex arrival setting. This contrasts with the edge arrival setting where two passes are required.

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arXiv2021

Pattern Matching on Grammar-Compressed Strings in Linear Time

The most fundamental problem considered in algorithms for text processing is pattern matching: given a pattern $p$ of length $m$ and a text $t$ of length $n$, does $p$ occur in $t$? Multiple versions of this basic question have been considered, and by now we know algorithms that are fast both in practice and in theory. However, the rapid increase in the amount of generated and stored data brings the need of designing algorithms that operate directly on compressed representations of data. In the compressed pattern matching problem we are given a compressed representation of the text, with $n$ being the length of the compressed representation and $N$ being the length of the text, and an uncompressed pattern of length $m$. The most challenging (and yet relevant when working with highly repetitive data, say biological information) scenario is when the chosen compression method is capable of describing a string of exponential length (in the size of its representation). An elegant formalism for such a compression method is that of straight-line programs, which are simply context-free grammars describing exactly one string. While it has been known that compressed pattern matching problem can be solved in $O(m+n\log N)$ time for this compression method, designing a linear-time algorithm remained open. We resolve this open question by presenting an $O(n+m)$ time algorithm that, given a context-free grammar of size $n$ that produces a single string $t$ and a pattern $p$ of length $m$, decides whether $p$ occurs in $t$ as a substring. To this end, we devise improved solutions for the weighted ancestor problem and the substring concatenation problem.

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arXiv2021

Finding the KT partition of a weighted graph in near-linear time

In a breakthrough work, Kawarabayashi and Thorup (J.~ACM'19) gave a near-linear time deterministic algorithm for minimum cut in a simple graph $G = (V,E)$. A key component is finding the $(1+\varepsilon)$-KT partition of $G$, the coarsest partition $\{P_1, \ldots, P_k\}$ of $V$ such that for every non-trivial $(1+\varepsilon)$-near minimum cut with sides $\{S, \bar{S}\}$ it holds that $P_i$ is contained in either $S$ or $\bar{S}$, for $i=1, \ldots, k$. Here we give a near-linear time randomized algorithm to find the $(1+\varepsilon)$-KT partition of a weighted graph. Our algorithm is quite different from that of Kawarabayashi and Thorup and builds on Karger's framework of tree-respecting cuts (J.~ACM'00). We describe applications of the algorithm. (i) The algorithm makes progress towards a more efficient algorithm for constructing the polygon representation of the set of near-minimum cuts in a graph. This is a generalization of the cactus representation initially described by Benczúr (FOCS'95). (ii) We improve the time complexity of a recent quantum algorithm for minimum cut in a simple graph in the adjacency list model from $\widetilde O(n^{3/2})$ to $\widetilde O(\sqrt{mn})$. (iii) We describe a new type of randomized algorithm for minimum cut in simple graphs with complexity $O(m + n \log^6 n)$. For slightly dense graphs this matches the complexity of the current best $O(m + n \log^2 n)$ algorithm which uses a different approach based on random contractions. The key technical contribution of our work is the following. Given a weighted graph $G$ with $m$ edges and a spanning tree $T$, consider the graph $H$ whose nodes are the edges of $T$, and where there is an edge between two nodes of $H$ iff the corresponding 2-respecting cut of $T$ is a non-trivial near-minimum cut of $G$. We give a $O(m \log^4 n)$ time deterministic algorithm to compute a spanning forest of $H$.

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arXiv2021

Streaming dictionary matching with mismatches

In the $k$-mismatch problem we are given a pattern of length $n$ and a text and must find all locations where the Hamming distance between the pattern and the text is at most $k$. A series of recent breakthroughs have resulted in an ultra-efficient streaming algorithm for this problem that requires only $O(k \log \frac{n}{k})$ space and $O(\log \frac{n}{k} (\sqrt{k \log k} + \log^3 n))$ time per letter [Clifford, Kociumaka, Porat, SODA 2019]. In this work, we consider a strictly harder problem called dictionary matching with $k$ mismatches. In this problem, we are given a dictionary of $d$ patterns, where the length of each pattern is at most $n$, and must find all substrings of the text that are within Hamming distance $k$ from one of the patterns. We develop a streaming algorithm for this problem with $O(k d \log^k d \mathrm{polylog}(n))$ space and $O(k \log^{k} d \mathrm{polylog}(n) + |\mathrm{occ}|)$ time per position of the text. The algorithm is randomised and outputs correct answers with high probability. On the lower bound side, we show that any streaming algorithm for dictionary matching with $k$ mismatches requires $Ω(k d)$ bits of space.

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arXiv2021

Matching Patterns with Variables under Hamming Distance

A pattern $α$ is a string of variables and terminal letters. We say that $α$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $α$ by terminal words. The matching problem, i.e., deciding whether a given pattern matches a given word, was heavily investigated: it is NP-complete in general, but can be solved efficiently for classes of patterns with restricted structure. In this paper, we approach this problem in a generalized setting, by considering approximate pattern matching under Hamming distance. More precisely, we are interested in what is the minimum Hamming distance between $w$ and any word $u$ obtained by replacing the variables of $α$ by terminal words. Firstly, we address the class of regular patterns (in which no variable occurs twice) and propose efficient algorithms for this problem, as well as matching conditional lower bounds. We show that the problem can still be solved efficiently if we allow repeated variables, but restrict the way the different variables can be interleaved according to a locality parameter. However, as soon as we allow a variable to occur more than once and its occurrences can be interleaved arbitrarily with those of other variables, even if none of them occurs more than once, the problem becomes intractable.

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arXiv2021

Lower Bounds for the Number of Repetitions in 2D Strings

A two-dimensional string is simply a two-dimensional array. We continue the study of the combinatorial properties of repetitions in such strings over the binary alphabet, namely the number of distinct tandems, distinct quartics, and runs. First, we construct an infinite family of $n\times n$ 2D strings with $Ω(n^{3})$ distinct tandems. Second, we construct an infinite family of $n\times n$ 2D strings with $Ω(n^{2}\log n)$ distinct quartics. Third, we construct an infinite family of $n\times n$ 2D strings with $Ω(n^{2}\log n)$ runs. This resolves an open question of Charalampopoulos, Radoszewski, Rytter, Waleń, and Zuba [ESA 2020], who asked if the number of distinct quartics and runs in an $n\times n$ 2D string is $\mathcal{O}(n^{2})$.

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arXiv2021

Elastic-Degenerate String Matching via Fast Matrix Multiplication

An elastic-degenerate (ED) string is a sequence of $n$ sets of strings of total length $N$, which was recently proposed to model a set of similar sequences. The ED string matching (EDSM) problem is to find all occurrences of a pattern of length $m$ in an ED text. An $O(nm^{1.5}\sqrt{\log m}+N)$-time algorithm for EDSM is known [Aoyama et al., CPM 2018]. The standard assumption in the prior work on this question is that $N$ is substantially larger than both $n$ and $m$, and thus we would like to have a linear dependency on the former. Under this assumption, the natural open problem is whether we can decrease the 1.5 exponent in the time complexity, similarly as in the related (but, to the best of our knowledge, not equivalent) word break problem [Backurs and Indyk, FOCS 2016]. Our starting point is a conditional lower bound for EDSM. We use the popular combinatorial Boolean Matrix Multiplication (BMM) conjecture stating that there is no truly subcubic combinatorial algorithm for BMM [Abboud and Williams, FOCS 2014]. By designing an appropriate reduction we show that a combinatorial algorithm solving the EDSM problem in $O(nm^{1.5-e}+N)$ time, for any $e>0$, refutes this conjecture. Our reduction should be understood as an indication that decreasing the exponent requires fast matrix multiplication. String periodicity and fast Fourier transform are two standard tools in string algorithms. Our main technical contribution is that we successfully combine these tools with fast matrix multiplication to design a non-combinatorial $\tilde{O}(nm^{ω-1}+N)$-time algorithm for EDSM, where $ω$ denotes the matrix multiplication exponent. To the best of our knowledge, we are the first to combine these tools. In particular, using the fact that $ω<2.373$ [Le Gall, ISSAC 2014; Williams, STOC 2012], we obtain an $O(nm^{1.373}+N)$-time algorithm for EDSM.

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arXiv2021

An Almost Optimal Edit Distance Oracle

We consider the problem of preprocessing two strings $S$ and $T$, of lengths $m$ and $n$, respectively, in order to be able to efficiently answer the following queries: Given positions $i,j$ in $S$ and positions $a,b$ in $T$, return the optimal alignment of $S[i \mathinner{.\,.} j]$ and $T[a \mathinner{.\,.} b]$. Let $N=mn$. We present an oracle with preprocessing time $N^{1+o(1)}$ and space $N^{1+o(1)}$ that answers queries in $\log^{2+o(1)}N$ time. In other words, we show that we can query the alignment of every two substrings in almost the same time it takes to compute just the alignment of $S$ and $T$. Our oracle uses ideas from our distance oracle for planar graphs [STOC 2019] and exploits the special structure of the alignment graph. Conditioned on popular hardness conjectures, this result is optimal up to subpolynomial factors. Our results apply to both edit distance and longest common subsequence (LCS). The best previously known oracle with construction time and size $\mathcal{O}(N)$ has slow $Ω(\sqrt{N})$ query time [Sakai, TCS 2019], and the one with size $N^{1+o(1)}$ and query time $\log^{2+o(1)}N$ (using a planar graph distance oracle) has slow $Ω(N^{3/2})$ construction time [Long & Pettie, SODA 2021]. We improve both approaches by roughly a $\sqrt N$ factor.

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arXiv2021

Conditional Lower Bounds for Variants of Dynamic LIS

In this note, we consider the complexity of maintaining the longest increasing subsequence (LIS) of an array under (i) inserting an element, and (ii) deleting an element of an array. We show that no algorithm can support queries and updates in time $\mathcal{O}(n^{1/2-ε})$ and $\mathcal{O}(n^{1/3-ε})$ for the dynamic LIS problem, for any constant $ε>0$, when the elements are weighted or the algorithm supports 1D-queries (on subarrays), respectively, assuming the All-Pairs Shortest Paths (APSP) conjecture or the Online Boolean Matrix-Vector Multiplication (OMv) conjecture. The main idea in our construction comes from the work of Abboud and Dahlgaard [FOCS 2016], who proved conditional lower bounds for dynamic planar graph algorithm. However, this needs to be appropriately adjusted and translated to obtain an instance of the dynamic LIS problem.

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arXiv2021

Fault-Tolerant Distance Labeling for Planar Graphs

In fault-tolerant distance labeling we wish to assign short labels to the vertices of a graph $G$ such that from the labels of any three vertices $u,v,f$ we can infer the $u$-to-$v$ distance in the graph $G\setminus \{f\}$. We show that any directed weighted planar graph (and in fact any graph in a graph family with $O(\sqrt{n})$-size separators, such as minor-free graphs) admits fault-tolerant distance labels of size $O(n^{2/3})$. We extend these labels in a way that allows us to also count the number of shortest paths, and provide additional upper and lower bounds for labels and oracles for counting shortest paths.

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arXiv2021

Strictly In-Place Algorithms for Permuting and Inverting Permutations

We revisit the problem of permuting an array of length $n$ according to a given permutation in place, that is, using only a small number of bits of extra storage. Fich, Munro and Poblete [FOCS 1990, SICOMP 1995] obtained an elegant $\mathcal{O}(n\log n)$-time algorithm using only $\mathcal{O}(\log^{2}n)$ bits of extra space for this basic problem by designing a procedure that scans the permutation and outputs exactly one element from each of its cycles. However, in the strict sense in place should be understood as using only an asymptotically optimal $\mathcal{O}(\log n)$ bits of extra space, or storing a constant number of indices. The problem of permuting in this version is, in fact, a well-known interview question, with the expected solution being a quadratic-time algorithm. Surprisingly, no faster algorithm seems to be known in the literature. Our first contribution is a strictly in-place generalisation of the method of Fich et al. that works in $\mathcal{O}_{\varepsilon}(n^{1+\varepsilon})$ time, for any $\varepsilon > 0$. Then, we build on this generalisation to obtain a strictly in-place algorithm for inverting a given permutation on $n$ elements working in the same complexity. This is a significant improvement on a recent result of Guśpiel [arXiv 2019], who designed an $\mathcal{O}(n^{1.5})$-time algorithm.

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