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Pedro Assis

Publications and source records attributed to Pedro Assis.

9 recordsLinked to original sources
arXiv2023

Data navigation on the ENCODE portal

Spanning two decades, the Encyclopaedia of DNA Elements (ENCODE) is a collaborative research project that aims to identify all the functional elements in the human and mouse genomes. To best serve the scientific community, all data generated by the consortium is shared through a web-portal (https://www.encodeproject.org/) with no access restrictions. The fourth and final phase of the project added a diverse set of new samples (including those associated with human disease), and a wide range of new assays aimed at detection, characterization and validation of functional genomic elements. The ENCODE data portal hosts results from over 23,000 functional genomics experiments, over 800 functional elements characterization experiments (including in vivo transgenic enhancer assays, reporter assays and CRISPR screens) along with over 60,000 results of computational and integrative analyses (including imputations, predictions and genome annotations). The ENCODE Data Coordination Center (DCC) is responsible for development and maintenance of the data portal, along with the implementation and utilisation of the ENCODE uniform processing pipelines to generate uniformly processed data. Here we report recent updates to the data portal. Specifically, we have completely redesigned the home page, improved search interface, added several new pages to highlight collections of biologically related data (deeply profiled cell lines, immune cells, Alzheimer's Disease, RNA-Protein interactions, degron matrix and a matrix of experiments organised by human donors), added single-cell experiments, and enhanced the cart interface for visualisation and download of user-selected datasets.

q-bio.GN↗
arXiv2017

Autonomous RPCs for a Cosmic Ray ground array

We report on the behaviour of Resistive Plate Chambers (RPC) developed for muon detection in ultra-high energy cosmic ray (UHECR) experiments. The RPCs were developed for the MARTA project and were tested on field conditions. These RPCs cover an area of $1.5 \times 1.2\,{m^2}$ and are instrumented with 64 pickup electrodes providing a segmentation better than $20\,$cm. By shielding the detector units with enough slant mass to absorb the electromagnetic component in the air showers, a clean measurement of the muon content is allowed, a concept to be implemented in a next generation of UHECR experiments. The operation of a ground array detector poses challenging demands, as the RPC must operate remotely under extreme environmental conditions, with limited budgets for power and minimal maintenance. The RPC, DAQ, High Voltage and monitoring systems are enclosed in an aluminium-sealed case, providing a compact and robust unit suited for outdoor environments, which can be easily deployed and connected. The RPCs developed at LIP-Coimbra are able to operate using a very low gas flux, which allows running them for few years with a small gas reservoir. Several prototypes have already been built and tested both in the laboratory and outdoors. We report on the most recent tests done in the field that show that the developed RPCs have operated in a stable way for more than 2 years in field conditions.

astro-ph.IM↗
arXiv2016

Measurement of the Radiation Energy in the Radio Signal of Extensive Air Showers as a Universal Estimator of Cosmic-Ray Energy

We measure the energy emitted by extensive air showers in the form of radio emission in the frequency range from 30 to 80 MHz. Exploiting the accurate energy scale of the Pierre Auger Observatory, we obtain a radiation energy of 15.8 \pm 0.7 (stat) \pm 6.7 (sys) MeV for cosmic rays with an energy of 1 EeV arriving perpendicularly to a geomagnetic field of 0.24 G, scaling quadratically with the cosmic-ray energy. A comparison with predictions from state-of-the-art first-principle calculations shows agreement with our measurement. The radiation energy provides direct access to the calorimetric energy in the electromagnetic cascade of extensive air showers. Comparison with our result thus allows the direct calibration of any cosmic-ray radio detector against the well-established energy scale of the Pierre Auger Observatory.

astro-ph.HE↗
arXiv2016

Energy Estimation of Cosmic Rays with the Engineering Radio Array of the Pierre Auger Observatory

The Auger Engineering Radio Array (AERA) is part of the Pierre Auger Observatory and is used to detect the radio emission of cosmic-ray air showers. These observations are compared to the data of the surface detector stations of the Observatory, which provide well-calibrated information on the cosmic-ray energies and arrival directions. The response of the radio stations in the 30 to 80 MHz regime has been thoroughly calibrated to enable the reconstruction of the incoming electric field. For the latter, the energy deposit per area is determined from the radio pulses at each observer position and is interpolated using a two-dimensional function that takes into account signal asymmetries due to interference between the geomagnetic and charge-excess emission components. The spatial integral over the signal distribution gives a direct measurement of the energy transferred from the primary cosmic ray into radio emission in the AERA frequency range. We measure 15.8 MeV of radiation energy for a 1 EeV air shower arriving perpendicularly to the geomagnetic field. This radiation energy -- corrected for geometrical effects -- is used as a cosmic-ray energy estimator. Performing an absolute energy calibration against the surface-detector information, we observe that this radio-energy estimator scales quadratically with the cosmic-ray energy as expected for coherent emission. We find an energy resolution of the radio reconstruction of 22% for the data set and 17% for a high-quality subset containing only events with at least five radio stations with signal.

astro-ph.HE↗
arXiv2015

Measurement of the cosmic ray spectrum above $4{\times}10^{18}$ eV using inclined events detected with the Pierre Auger Observatory

A measurement of the cosmic-ray spectrum for energies exceeding $4{\times}10^{18}$ eV is presented, which is based on the analysis of showers with zenith angles greater than $60^{\circ}$ detected with the Pierre Auger Observatory between 1 January 2004 and 31 December 2013. The measured spectrum confirms a flux suppression at the highest energies. Above $5.3{\times}10^{18}$ eV, the "ankle", the flux can be described by a power law $E^{-γ}$ with index $γ=2.70 \pm 0.02 \,\text{(stat)} \pm 0.1\,\text{(sys)}$ followed by a smooth suppression region. For the energy ($E_\text{s}$) at which the spectral flux has fallen to one-half of its extrapolated value in the absence of suppression, we find $E_\text{s}=(5.12\pm0.25\,\text{(stat)}^{+1.0}_{-1.2}\,\text{(sys)}){\times}10^{19}$ eV.

astro-ph.HE↗
arXiv2015

An improved limit to the diffuse flux of ultra-high energy neutrinos from the Pierre Auger Observatory

Neutrinos in the cosmic ray flux with energies near 1 EeV and above are detectable with the Surface Detector array of the Pierre Auger Observatory. We report here on searches through Auger data from 1 January 2004 until 20 June 2013. No neutrino candidates were found, yielding a limit to the diffuse flux of ultra-high energy neutrinos that challenges the Waxman-Bahcall bound predictions. Neutrino identification is attempted using the broad time-structure of the signals expected in the SD stations, and is efficiently done for neutrinos of all flavors interacting in the atmosphere at large zenith angles, as well as for "Earth-skimming" neutrino interactions in the case of tau neutrinos. In this paper the searches for downward-going neutrinos in the zenith angle bins $60^\circ-75^\circ$ and $75^\circ-90^\circ$ as well as for upward-going neutrinos, are combined to give a single limit. The $90\%$ C.L. single-flavor limit to the diffuse flux of ultra-high energy neutrinos with an $E^{-2}$ spectrum in the energy range $1.0 \times 10^{17}$ eV - $2.5 \times 10^{19}$ eV is $E_ν^2 dN_ν/dE_ν< 6.4 \times 10^{-9}~ {\rm GeV~ cm^{-2}~ s^{-1}~ sr^{-1}}$.

astro-ph.HE↗
arXiv2015

Status of the Silicon Photomultiplier Telescope FAMOUS for the Fluorescence Detection of UHECRs

An established technique for the measurement of ultra-high-energy-cosmic-rays is the detection of the fluorescence light induced in the atmosphere of the Earth, by means of telescopes equipped with photomultiplier tubes. Silicon photomultipliers (SiPMs) promise an increase in the photon detection efficiency which outperforms conventional photomultiplier tubes. In combination with their compact package, a moderate bias voltage of several ten volt and single photon resolution, the use of SiPMs can improve the energy and spatial resolution of air fluorescence measurements, and lead to a gain in information on the primary particle. Though, drawbacks like a high dark-noise-rate and a strong temperature dependency have to be managed. FAMOUS is a refracting telescope prototype instrumented with 64 SiPMs of which the main optical element is a Fresnel lens of 549.7 mm diameter and 502.1 mm focal length. The sensitive area of the SiPMs is increased by a special light collection system consisting of Winston cones. The total field of view of the telescope is approximately 12 $^\circ$. The frontend electronics automatically compensates for the temperature dependency of the SiPMs and will provide trigger information for the readout. Already for this prototype, the Geant4 detector simulation indicates full detection efficiency of extensive air showers of $E=10^{18}\,\text{eV}$ up to a distance of 6 km. We present the first working version of FAMOUS with a focal plane prototype providing seven active pixels.

astro-ph.IM↗
arXiv2014

Solar panels as cosmic-ray detectors

Due to fundamental limitations of accelerators, only cosmic rays can give access to centre-of- mass energies more than one order of magnitude above those reached at the LHC. In fact, extreme energy cosmic rays (1018 eV - 1020 eV) are the only possibility to explore the 100 TeV energy scale in the years to come. This leap by one order of magnitude gives a unique way to open new horizons: new families of particles, new physics scales, in-depth investigations of the Lorentz symmetries. However, the flux of cosmic rays decreases rapidly, being less than one particle per square kilometer per year above 1019 eV: one needs to sample large surfaces. A way to develop large-effective area, low cost, detectors, is to build a solar panel-based device which can be used in parallel for power generation and Cherenkov light detection. Using solar panels for Cherenkov light detection would combine power generation and a non-standard detection device.

astro-ph.IM↗