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Peng Ye

Publications and source records attributed to Peng Ye.

At least 55 records · Page 3Linked to original sources
arXiv2026

Infinite-component $BF$ field theory: Connection of fracton order, Toeplitz braiding, and non-Hermitian amplification

Building on the infinite-component Chern--Simons theory of three-dimensional fracton phases by Ma et al. [Phys. Rev. B 105, 195124 (2022)] and the Toeplitz braiding of anyons by Li et al.~[Phys. Rev B 110, 205108 (2024)], we show that stacking $(3+1)$D $BF$ topological field theories, which serve as low-energy effective descriptions of a class of three-dimensional topological orders, along a fourth spatial direction gives rise to an exotic class of four-dimensional fracton phases. Their low-energy physics is governed by a new field-theoretic framework, namely \textit{infinite-component $BF$} (i$BF$) \textit{theories}, characterized by asymmetric integer Toeplitz $K$ matrices. Under open boundary conditions along the stacking direction, i$BF$ theories with properly chosen $K$ matrices exhibit a striking phenomenon termed \textit{Toeplitz particle--loop braiding}, where a particle and a loop placed on opposite three-dimensional boundaries acquire a strongly oscillating yet robustly nonvanishing braiding phase even at infinite separation. This nonlocal braiding admits a geometric interpretation: adiabatically transporting the particle induces a winding boundary trajectory on the opposite boundary that encircles the loop. We show that this robustness originates from boundary zero singular modes (ZSMs) of Toeplitz $K$ matrices revealed by singular value decomposition, rather than from boundary zero eigenmodes responsible for previously known Toeplitz braiding of anyons, and that the same ZSM mechanism also underlies directional amplification in the rapidly developing field of non-Hermitian physics. We analytically and numerically study representative i$BF$ theories with Hatano--Nelson--type and non-Hermitian Su--Schrieffer--Heeger--type $K$ matrices, establishing a universal correspondence between ZSMs and Toeplitz particle--loop braiding.

cond-mat.str-el↗
arXiv2026

Fair splits flip the leaderboard: CHANRG reveals limited generalization in RNA secondary-structure prediction

Accurate prediction of RNA secondary structure underpins transcriptome annotation, mechanistic analysis of non-coding RNAs, and RNA therapeutic design. Recent gains from deep learning and RNA foundation models are difficult to interpret because current benchmarks may overestimate generalization across RNA families. We present the Comprehensive Hierarchical Annotation of Non-coding RNA Groups (CHANRG), a benchmark of 170{,}083 structurally non-redundant RNAs curated from more than 10 million sequences in Rfam~15.0 using structure-aware deduplication, genome-aware split design and multiscale structural evaluation. Across 29 predictors, foundation-model methods achieved the highest held-out accuracy but lost most of that advantage out of distribution, whereas structured decoders and direct neural predictors remained markedly more robust. This gap persisted after controlling for sequence length and reflected both loss of structural coverage and incorrect higher-order wiring. Together, CHANRG and a padding-free, symmetry-aware evaluation stack provide a stricter and batch-invariant framework for developing RNA structure predictors with demonstrable out-of-distribution robustness.

q-bio.BM↗
arXiv2026

Revisiting Multimodal KV Cache Compression: A Frequency-Domain-Guided Outlier-KV-Aware Approach

Multimodal large language models suffer from substantial inference overhead since multimodal KV Cache grows proportionally with the visual input length. Existing multimodal KV Cache compression methods mostly rely on attention score to reduce cache size, which makes them are incompatible with established efficient attention kernels (e.g., FlashAttention) and ignores the contribution of value vectors to the attention output. In this work, we revisit multimodal KV Cache compression from the perspective of the KV matrices' distribution. First, we observe that frequency-domain energy of multimodal KV matrices is predominantly concentrated in low-frequency and extract this principal energy via a low-pass filter. Further, we find that removing KV pairs that deviate substantially from this principal energy leads to a pronounced performance drop, which we define as Outlier KVs. Considering Outlier KVs are more likely to encode features critical for inference, we propose FlashCache, a frequency-domain-guided, Outlier-KV-aware KV Cache compression framework. First, we introduce an Outlier KV Recognition Module that models the principal component of multimodal KV matrices in the frequency domain and preferentially retains KV pairs that significantly deviate from it. Furthermore, Dynamic Budget Allocation Module is designed to adaptively determine the per-layer KV Cache size to retain more Outlier KVs. Experiments on multiple MLLMs and benchmarks demonstrate that FlashCache outperforms state-of-the-art multimoal KV compression methods, achieving up to 1.69 times faster decoding with 80% lower KV memory usage while maintaining task performance.

cs.LG↗
arXiv2026

Learning to Explore with Parameter-Space Noise: A Deep Dive into Parameter-Space Noise for Reinforcement Learning with Verifiable Rewards

Reinforcement Learning with Verifiable Rewards (RLVR) improves LLM reasoning, yet growing evidence indicates an exploration ceiling: it often reweights existing solution traces rather than discovering new strategies, limiting gains under large sampling budgets (e.g., pass-at-256). We address this limitation with PSN-RLVR, which perturbs policy parameters before rollout generation to induce temporally consistent, trajectory-level exploration that better preserves long-horizon chain-of-thought coherence than action-space noise. To mitigate the resulting sampling-update mismatch, we incorporate truncated importance sampling (TIS). To avoid expensive KL-based adaptive noise control, we propose a computationally efficient real-time adaptive noise scheduler driven by a lightweight surrogate that combines semantic diversity with normalized self-certainty. Instantiated on GRPO, a widely used RLVR method, PSN-GRPO consistently expands the effective reasoning capability boundary across multiple mathematical reasoning benchmarks and model families, yielding higher pass-at-k under large sampling budgets and outperforming prior exploration-oriented RLVR methods (e.g., Pass-at-k-style training) while remaining orthogonal and thus composable for additional gains.

cs.LG↗
arXiv2026

Beyond Gemini-3-Pro: Revisiting LLM Routing and Aggregation at Scale

Large Language Models (LLMs) have rapidly advanced, with Gemini-3-Pro setting a new performance milestone. In this work, we explore collective intelligence as an alternative to monolithic scaling, and demonstrate that open-source LLMs' collaboration can surpass Gemini-3-Pro. We first revisit LLM routing and aggregation at scale and identify three key bottlenecks: (1) current train-free routers are limited by a query-based paradigm focusing solely on textual similarity; (2) recent aggregation methods remain largely static, failing to select appropriate aggregators for different tasks;(3) the complementarity of routing and aggregation remains underutilized. To address these problems, we introduce JiSi, a novel framework designed to release the full potential of LLMs' collaboration through three innovations: (1) Query-Response Mixed Routing capturing both semantic information and problem difficulty; (2) Support-Set-based Aggregator Selection jointly evaluating the aggregation and domain capacity of aggregators; (3) Adaptive Routing-Aggregation Switch dynamically leveraging the advantages of routing and aggregation. Comprehensive experiments on nine benchmarks demonstrate that JiSi can surpass Gemini-3-Pro with only 47% costs by orchestrating ten open-source LLMs, while outperforming mainstream baselines. It suggests that collective intelligence represents a novel path towards Artificial General Intelligence (AGI).

cs.AI↗
arXiv2026

P1-VL: Bridging Visual Perception and Scientific Reasoning in Physics Olympiads

The transition from symbolic manipulation to science-grade reasoning represents a pivotal frontier for Large Language Models (LLMs), with physics serving as the critical test anchor for binding abstract logic to physical reality. Physics demands that a model maintain physical consistency with the laws governing the universe, a task that fundamentally requires multimodal perception to ground abstract logic in reality. At the Olympiad level, diagrams are often constitutive rather than illustrative, containing essential constraints, such as boundary conditions and spatial symmetries, that are absent from the text. To bridge this visual-logical gap, we introduce P1-VL, a family of open-source vision-language models engineered for advanced scientific reasoning. Our method harmonizes Curriculum Reinforcement Learning, which employs progressive difficulty expansion to stabilize post-training, with Agentic Augmentation, enabling iterative self-verification at inference. Evaluated on HiPhO, a rigorous benchmark of 13 exams from 2024-2025, our flagship P1-VL-235B-A22B becomes the first open-source Vision-Language Model (VLM) to secure 12 gold medals and achieves the state-of-the-art performance in the open-source models. Our agent-augmented system achieves the No.2 overall rank globally, trailing only Gemini-3-Pro. Beyond physics, P1-VL demonstrates remarkable scientific reasoning capacity and generalizability, establishing significant leads over base models in STEM benchmarks. By open-sourcing P1-VL, we provide a foundational step toward general-purpose physical intelligence to better align visual perceptions with abstract physical laws for machine scientific discovery.

cs.AI↗
arXiv2026

InternAgent-1.5: A Unified Agentic Framework for Long-Horizon Autonomous Scientific Discovery

We introduce InternAgent-1.5, a unified system designed for end-to-end scientific discovery across computational and empirical domains. The system is built on a structured architecture composed of three coordinated subsystems for generation, verification, and evolution. These subsystems are supported by foundational capabilities for deep research, solution optimization, and long horizon memory. The architecture allows InternAgent-1.5 to operate continuously across extended discovery cycles while maintaining coherent and improving behavior. It also enables the system to coordinate computational modeling and laboratory experimentation within a single unified system. We evaluate InternAgent-1.5 on scientific reasoning benchmarks such as GAIA, HLE, GPQA, and FrontierScience, and the system achieves leading performance that demonstrates strong foundational capabilities. Beyond these benchmarks, we further assess two categories of discovery tasks. In algorithm discovery tasks, InternAgent-1.5 autonomously designs competitive methods for core machine learning problems. In empirical discovery tasks, it executes complete computational or wet lab experiments and produces scientific findings in earth, life, biological, and physical domains. Overall, these results show that InternAgent-1.5 provides a general and scalable framework for autonomous scientific discovery.

cs.AI↗
arXiv2026

MARTI-MARS$^2$: Scaling Multi-Agent Self-Search via Reinforcement Learning for Code Generation

While the complex reasoning capability of Large Language Models (LLMs) has attracted significant attention, single-agent systems often encounter inherent performance ceilings in complex tasks such as code generation. Multi-agent collaboration offers a promising avenue to transcend these boundaries. However, existing frameworks typically rely on prompt-based test-time interactions or multi-role configurations trained with homogeneous parameters, limiting error correction capabilities and strategic diversity. In this paper, we propose a Multi-Agent Reinforced Training and Inference Framework with Self-Search Scaling (MARTI-MARS2), which integrates policy learning with multi-agent tree search by formulating the multi-agent collaborative exploration process as a dynamic and learnable environment. By allowing agents to iteratively explore and refine within the environment, the framework facilitates evolution from parameter-sharing homogeneous multi-role training to heterogeneous multi-agent training, breaking through single-agent capability limits. We also introduce an efficient inference strategy MARTI-MARS2-T+ to fully exploit the scaling potential of multi-agent collaboration at test time. We conduct extensive experiments across varied model scales (8B, 14B, and 32B) on challenging code generation benchmarks. Utilizing two collaborating 32B models, MARTI-MARS2 achieves 77.7%, outperforming strong baselines like GPT-5.1. Furthermore, MARTI-MARS2 reveals a novel scaling law: shifting from single-agent to homogeneous multi-role and ultimately to heterogeneous multi-agent paradigms progressively yields higher RL performance ceilings, robust TTS capabilities, and greater policy diversity, suggesting that policy diversity is critical for scaling intelligence via multi-agent reinforcement learning.

cs.LG↗
arXiv2026

Spurious Strange Correlators in Symmetry-Protected Topological Phases

Strange correlator is a powerful tool widely used in detecting symmetry-protected topological (SPT) phases. However, the result of strange correlator crucially relies on the adoption of the reference state. In this work, we report that an ill-chosen reference state can induce spurious long-range strange correlators in trivial SPT phases, leading to false positives in SPT diagnosis. Focusing on 1D gapped bosonic/spin systems described by matrix product states (MPS), we trace the origin of these spurious signals in trivial SPT phases to the magnitude-degeneracy of the transfer matrix. We systematically classify three distinct mechanisms responsible for such degeneracy, each substantiated by concrete examples: (1) the presence of high-dimensional irreducible representations (abbreviated as \emph{irrep}) in the eigenspace corresponding to the entanglment spectrum (entanglement space); (2) a phase mismatch in symmetry representations between the target and reference states; and (3) long-range order arising from symmetry breaking. Our findings clarify the importance of the choice of proper reference states, providing a guideline to avoid pitfalls and correctly identify SPT order using strange correlators.

cond-mat.str-el↗
arXiv2026

Non-invertible symmetries and mixed anomalies from conserved current construction in (3+1)D twisted $BF$ topological quantum field theories

We develop a current-based construction of generalized symmetries in $(3+1)$D twisted $BF$ topological quantum field theories (TQFTs), focusing on intrinsically non-invertible higher-form symmetries and their mixed anomalies. Starting from the equations of motion, we extract conserved currents and exponentiate the corresponding charges to obtain topological symmetry operators. This gives a step-by-step procedure for constructing symmetry operators, fusion, and anomaly diagnostics directly from the continuum action. We focus on twisted $BF$ theories with gauge group $G=\prod_i \mathbb{Z}_{N_i}$ and an $a\wedge a\wedge b$ twist, where $a$'s and $b$ are 1-form and 2-form gauge fields, respectively. These theories realize non-Abelian $(3+1)$D TQFTs supporting Borromean-rings braiding and describe three-dimensional non-Abelian topological orders in condensed matter. For $G=(\mathbb{Z}_2)^3$, a microscopic realization is given by the $\mathbb{D}_4$ Kitaev quantum double model. Two distinct classes of conserved currents emerge: Type-I currents generate invertible higher-form symmetries with group-like fusion, while Type-II currents require additional consistency conditions on gauge-field configurations, leading to intrinsically non-invertible symmetries dressed by projectors. We compute the fusion algebra: invertible operators admit inverses, while non-invertible ones exhibit multi-channel fusion governed by projector fusion. We diagnose mixed anomalies by coupling multiple conserved currents to background gauge fields, revealing two outcomes: anomalies canceled by anomaly inflow from a higher-dimensional theory, and intrinsic gauging obstructions encoded in the $(3+1)$D continuum theory. Overall, our results provide a unified and practical approach for constructing and characterizing higher-form symmetries, which can be extended to more general TQFTs and topological orders.

cond-mat.str-el↗
arXiv2026

A Unified Study of LoRA Variants: Taxonomy, Review, Codebase, and Empirical Evaluation

Low-Rank Adaptation (LoRA) is a fundamental parameter-efficient fine-tuning method that balances efficiency and performance in large-scale neural networks. However, the proliferation of LoRA variants has led to fragmentation in methodology, theory, code, and evaluation. To this end, this work presents the first unified study of LoRA variants, offering a systematic taxonomy, unified theoretical review, structured codebase, and standardized empirical assessment. First, we categorize LoRA variants along four principal axes: rank, optimization dynamics, initialization, and integration with Mixture-of-Experts. Then, we review their relationships and evolution within a common theoretical framework focused on low-rank update dynamics. Further, we introduce LoRAFactory, a modular codebase that implements variants through a unified interface, supporting plug-and-play experimentation and fine-grained analysis. Last, using this codebase, we conduct a large-scale evaluation across natural language generation, natural language understanding, and image classification tasks, systematically exploring key hyperparameters. Our results uncover several findings, notably: LoRA and its variants exhibit pronounced sensitivity to the choices of learning rate compared to other hyperparameters; moreover, with proper hyperparameter configurations, LoRA consistently matches or surpasses the performance of most of its variants.

cs.LG↗
arXiv2026

scMRDR: A scalable and flexible framework for unpaired single-cell multi-omics data integration

Advances in single-cell sequencing have enabled high-resolution profiling of diverse molecular modalities, while integrating unpaired multi-omics single-cell data remains challenging. Existing approaches either rely on pair information or prior correspondences, or require computing a global pairwise coupling matrix, limiting their scalability and flexibility. In this paper, we introduce a scalable and flexible generative framework called single-cell Multi-omics Regularized Disentangled Representations (scMRDR) for unpaired multi-omics integration. Specifically, we disentangle each cell's latent representations into modality-shared and modality-specific components using a well-designed $β$-VAE architecture, which are augmented with isometric regularization to preserve intra-omics biological heterogeneity, adversarial objective to encourage cross-modal alignment, and masked reconstruction loss strategy to address the issue of missing features across modalities. Our method achieves excellent performance on benchmark datasets in terms of batch correction, modality alignment, and biological signal preservation. Crucially, it scales effectively to large-scale datasets and supports integration of more than two omics, offering a powerful and flexible solution for large-scale multi-omics data integration and downstream biological discovery.

q-bio.QM↗
arXiv2026

LLMRouterBench: A Massive Benchmark and Unified Framework for LLM Routing

Large language model (LLM) routing assigns each query to the most suitable model from an ensemble. We introduce LLMRouterBench, a large-scale benchmark and unified framework for LLM routing. It comprises over 400K instances from 21 datasets and 33 models. Moreover, it provides comprehensive metrics for both performance-oriented routing and performance-cost trade-off routing, and integrates 10 representative routing baselines. Using LLMRouterBench, we systematically re-evaluate the field. While confirming strong model complementarity-the central premise of LLM routing-we find that many routing methods exhibit similar performance under unified evaluation, and several recent approaches, including commercial routers, fail to reliably outperform a simple baseline. Meanwhile, a substantial gap remains to the Oracle, driven primarily by persistent model-recall failures. We further show that backbone embedding models have limited impact, that larger ensembles exhibit diminishing returns compared to careful model curation, and that the benchmark also enables latency-aware analysis. All code and data are available at https://github.com/ynulihao/LLMRouterBench.

cs.AI↗
arXiv2026

SciEvalKit: An Open-source Evaluation Toolkit for Scientific General Intelligence

We introduce SciEvalKit, a unified benchmarking toolkit designed to evaluate AI models for science across a broad range of scientific disciplines and task capabilities. Unlike general-purpose evaluation platforms, SciEvalKit focuses on the core competencies of scientific intelligence, including Scientific Multimodal Perception, Scientific Multimodal Reasoning, Scientific Multimodal Understanding, Scientific Symbolic Reasoning, Scientific Code Generation, Science Hypothesis Generation and Scientific Knowledge Understanding. It supports six major scientific domains, spanning from physics and chemistry to astronomy and materials science. SciEvalKit builds a foundation of expert-grade scientific benchmarks, curated from real-world, domain-specific datasets, ensuring that tasks reflect authentic scientific challenges. The toolkit features a flexible, extensible evaluation pipeline that enables batch evaluation across models and datasets, supports custom model and dataset integration, and provides transparent, reproducible, and comparable results. By bridging capability-based evaluation and disciplinary diversity, SciEvalKit offers a standardized yet customizable infrastructure to benchmark the next generation of scientific foundation models and intelligent agents. The toolkit is open-sourced and actively maintained to foster community-driven development and progress in AI4Science.

cs.AI↗
arXiv2025

EGM: Efficiently Learning General Motion Tracking Policy for High Dynamic Humanoid Whole-Body Control

Learning a general motion tracking policy from human motions shows great potential for versatile humanoid whole-body control. Conventional approaches are not only inefficient in data utilization and training processes but also exhibit limited performance when tracking highly dynamic motions. To address these challenges, we propose EGM, a framework that enables efficient learning of a general motion tracking policy. EGM integrates four core designs. Firstly, we introduce a Bin-based Cross-motion Curriculum Adaptive Sampling strategy to dynamically orchestrate the sampling probabilities based on tracking error of each motion bin, eficiently balancing the training process across motions with varying dificulty and durations. The sampled data is then processed by our proposed Composite Decoupled Mixture-of-Experts (CDMoE) architecture, which efficiently enhances the ability to track motions from different distributions by grouping experts separately for upper and lower body and decoupling orthogonal experts from shared experts to separately handle dedicated features and general features. Central to our approach is a key insight we identified: for training a general motion tracking policy, data quality and diversity are paramount. Building on these designs, we develop a three-stage curriculum training flow to progressively enhance the policy's robustness against disturbances. Despite training on only 4.08 hours of data, EGM generalized robustly across 49.25 hours of test motions, outperforming baselines on both routine and highly dynamic tasks.

cs.RO↗
arXiv2025

Probing Scientific General Intelligence of LLMs with Scientist-Aligned Workflows

Despite advances in scientific AI, a coherent framework for Scientific General Intelligence (SGI)-the ability to autonomously conceive, investigate, and reason across scientific domains-remains lacking. We present an operational SGI definition grounded in the Practical Inquiry Model (PIM: Deliberation, Conception, Action, Perception) and operationalize it via four scientist-aligned tasks: deep research, idea generation, dry/wet experiments, and experimental reasoning. SGI-Bench comprises over 1,000 expert-curated, cross-disciplinary samples inspired by Science's 125 Big Questions, enabling systematic evaluation of state-of-the-art LLMs. Results reveal gaps: low exact match (10--20%) in deep research despite step-level alignment; ideas lacking feasibility and detail; high code executability but low execution result accuracy in dry experiments; low sequence fidelity in wet protocols; and persistent multimodal comparative-reasoning challenges. We further introduce Test-Time Reinforcement Learning (TTRL), which optimizes retrieval-augmented novelty rewards at inference, enhancing hypothesis novelty without reference answer. Together, our PIM-grounded definition, workflow-centric benchmark, and empirical insights establish a foundation for AI systems that genuinely participate in scientific discovery.

cs.AI↗
arXiv2025

M-GRPO: Stabilizing Self-Supervised Reinforcement Learning for Large Language Models with Momentum-Anchored Policy Optimization

Self-supervised reinforcement learning (RL) presents a promising approach for enhancing the reasoning capabilities of Large Language Models (LLMs) without reliance on expensive human-annotated data. However, we find that existing methods suffer from a critical failure mode under long-horizon training: a "policy collapse" where performance precipitously degrades. We diagnose this instability and demonstrate that simply scaling the number of rollouts -- a common strategy to improve performance -- only delays, but does not prevent, this collapse. To counteract this instability, we first introduce M-GRPO (Momentum-Anchored Group Relative Policy Optimization), a framework that leverages a slowly evolving momentum model to provide a stable training target. In addition, we identify that this process is often accompanied by a rapid collapse in policy entropy, resulting in a prematurely confident and suboptimal policy. To specifically address this issue, we propose a second contribution: an adaptive filtering method based on the interquartile range (IQR) that dynamically prunes low-entropy trajectories, preserving essential policy diversity. Our extensive experiments on multiple reasoning benchmarks demonstrate that M-GRPO stabilizes the training process while the IQR filter prevents premature convergence. The combination of these two innovations leads to superior training stability and state-of-the-art performance.

cs.AI↗
arXiv2025

Towards an end-to-end artificial intelligence driven global weather forecasting system

The weather forecasting system is important for science and society, and significant achievements have been made in applying artificial intelligence (AI) to medium-range weather forecasting. However, existing AI-based weather forecasting models rely on analysis or reanalysis products from traditional numerical weather prediction (NWP) systems as initial conditions for making predictions. The initial states are typically generated by traditional data assimilation components, which are computationally expensive and time-consuming. Here, by cyclic training to model the steady-state background error covariance and introducing the confidence matrix to characterize the quality of observations, we present an AI-based data assimilation model, i.e., Adas, for global weather variables. Further, we combine Adas with the advanced AI-based forecasting model (i.e., FengWu) to construct an end-to-end AI-based global weather forecasting system: FengWu-Adas. We demonstrate that Adas can assimilate global conventional observations to produce high-quality analysis, enabling the system to operate stably for long term. Moreover, the system can generate accurate end-to-end weather forecasts with comparable skill to those of the IFS, demonstrating the promising potential of data-driven approaches.

physics.ao-ph↗