arXiv subjects

Pengcheng Zhou

Publications and source records attributed to Pengcheng Zhou.

25 records · Page 2Linked to original sources

arXiv2019

On the Security of A Remote Cloud Storage Integrity Checking Protocol

Data security and privacy is an important but challenging problem in cloud computing. One of the security concerns from cloud users is how to efficiently verify the integrity of their data stored on the cloud server. Third Party Auditing (TPA) is a new technique proposed in recent years to achieve this goal. In a recent paper (IEEE Transactions on Computers 62(2): 362-375 (2013)), Wang et al. proposed a highly efficient and scalable TPA protocol and also a Zero Knowledge Public Auditing protocol which can prevent offline guessing attacks. However, in this paper, we point out several security weaknesses in Wang et al's protocols: first, we show that an attacker can arbitrarily modify the cloud data without being detected by the auditor in the integrity checking process, and the attacker can achieve this goal even without knowing the content of the cloud data or any verification metadata maintained by the cloud server; secondly, we show that the Zero Knowledge Public Auditing protocol cannot achieve its design goal, that is to prevent offline guessing attacks.

cs.CR↗

arXiv2019

Regression via Arbitrary Quantile Modeling

In the regression problem, L1 and L2 are the most commonly used loss functions, which produce mean predictions with different biases. However, the predictions are neither robust nor adequate enough since they only capture a few conditional distributions instead of the whole distribution, especially for small datasets. To address this problem, we proposed arbitrary quantile modeling to regulate the prediction, which achieved better performance compared to traditional loss functions. More specifically, a new distribution regression method, Deep Distribution Regression (DDR), is proposed to estimate arbitrary quantiles of the response variable. Our DDR method consists of two models: a Q model, which predicts the corresponding value for arbitrary quantile, and an F model, which predicts the corresponding quantile for arbitrary value. Furthermore, the duality between Q and F models enables us to design a novel loss function for joint training and perform a dual inference mechanism. Our experiments demonstrate that our DDR-joint and DDR-disjoint methods outperform previous methods such as AdaBoost, random forest, LightGBM, and neural networks both in terms of mean and quantile prediction.

cs.LG↗

arXiv2019

Short-and-Sparse Deconvolution -- A Geometric Approach

Short-and-sparse deconvolution (SaSD) is the problem of extracting localized, recurring motifs in signals with spatial or temporal structure. Variants of this problem arise in applications such as image deblurring, microscopy, neural spike sorting, and more. The problem is challenging in both theory and practice, as natural optimization formulations are nonconvex. Moreover, practical deconvolution problems involve smooth motifs (kernels) whose spectra decay rapidly, resulting in poor conditioning and numerical challenges. This paper is motivated by recent theoretical advances, which characterize the optimization landscape of a particular nonconvex formulation of SaSD. This is used to derive a $provable$ algorithm which exactly solves certain non-practical instances of the SaSD problem. We leverage the key ideas from this theory (sphere constraints, data-driven initialization) to develop a $practical$ algorithm, which performs well on data arising from a range of application areas. We highlight key additional challenges posed by the ill-conditioning of real SaSD problems, and suggest heuristics (acceleration, continuation, reweighting) to mitigate them. Experiments demonstrate both the performance and generality of the proposed method.

eess.SP↗

arXiv2018

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

Calcium imaging has revolutionized systems neuroscience, providing the ability to image large neural populations with single-cell resolution. The resulting datasets are quite large, which has presented a barrier to routine open sharing of this data, slowing progress in reproducible research. State of the art methods for analyzing this data are based on non-negative matrix factorization (NMF); these approaches solve a non-convex optimization problem, and are effective when good initializations are available, but can break down in low-SNR settings where common initialization approaches fail. Here we introduce an approach to compressing and denoising functional imaging data. The method is based on a spatially-localized penalized matrix decomposition (PMD) of the data to separate (low-dimensional) signal from (temporally-uncorrelated) noise. This approach can be applied in parallel on local spatial patches and is therefore highly scalable, does not impose non-negativity constraints or require stringent identifiability assumptions (leading to significantly more robust results compared to NMF), and estimates all parameters directly from the data, so no hand-tuning is required. We have applied the method to a wide range of functional imaging data (including one-photon, two-photon, three-photon, widefield, somatic, axonal, dendritic, calcium, and voltage imaging datasets): in all cases, we observe ~2-4x increases in SNR and compression rates of 20-300x with minimal visible loss of signal, with no adjustment of hyperparameters; this in turn facilitates the process of demixing the observed activity into contributions from individual neurons. We focus on two challenging applications: dendritic calcium imaging data and voltage imaging data in the context of optogenetic stimulation. In both cases, we show that our new approach leads to faster and much more robust extraction of activity from the data.

q-bio.NC↗

arXiv2017

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data

In vivo calcium imaging through microscopes has enabled deep brain imaging of previously inaccessible neuronal populations within the brains of freely moving subjects. However, microendoscopic data suffer from high levels of background fluorescence as well as an increased potential for overlapping neuronal signals. Previous methods fail in identifying neurons and demixing their temporal activity because the cellular signals are often submerged in the large fluctuating background. Here we develop an efficient method to extract cellular signals with minimal influence from the background. We model the background with two realistic components: (1) one models the constant baseline and slow trends of each pixel, and (2) the other models the fast fluctuations from out-of-focus signals and is therefore constrained to have low spatial-frequency structure. This decomposition avoids cellular signals being absorbed into the background term. After subtracting the background approximated with this model, we use Constrained Nonnegative Matrix Factorization (CNMF, Pnevmatikakis et al. (2016)) to better demix neural signals and get their denoised and deconvolved temporal activity. We validate our method on simulated and experimental data, where it shows fast, reliable, and high quality signal extraction under a wide variety of imaging parameters.

q-bio.NC↗

arXiv2017

Fast Online Deconvolution of Calcium Imaging Data

Fluorescent calcium indicators are a popular means for observing the spiking activity of large neuronal populations, but extracting the activity of each neuron from raw fluorescence calcium imaging data is a nontrivial problem. We present a fast online active set method to solve this sparse non-negative deconvolution problem. Importantly, the algorithm progresses through each time series sequentially from beginning to end, thus enabling real-time online estimation of neural activity during the imaging session. Our algorithm is a generalization of the pool adjacent violators algorithm (PAVA) for isotonic regression and inherits its linear-time computational complexity. We gain remarkable increases in processing speed: more than one order of magnitude compared to currently employed state of the art convex solvers relying on interior point methods. Unlike these approaches, our method can exploit warm starts; therefore optimizing model hyperparameters only requires a handful of passes through the data. A minor modification can further improve the quality of activity inference by imposing a constraint on the minimum spike size. The algorithm enables real-time simultaneous deconvolution of $O(10^5)$ traces of whole-brain larval zebrafish imaging data on a laptop.

q-bio.NC↗

arXiv2014

False discovery rate regression: an application to neural synchrony detection in primary visual cortex

Many approaches for multiple testing begin with the assumption that all tests in a given study should be combined into a global false-discovery-rate analysis. But this may be inappropriate for many of today's large-scale screening problems, where auxiliary information about each test is often available, and where a combined analysis can lead to poorly calibrated error rates within different subsets of the experiment. To address this issue, we introduce an approach called false-discovery-rate regression that directly uses this auxiliary information to inform the outcome of each test. The method can be motivated by a two-groups model in which covariates are allowed to influence the local false discovery rate, or equivalently, the posterior probability that a given observation is a signal. This poses many subtle issues at the interface between inference and computation, and we investigate several variations of the overall approach. Simulation evidence suggests that: (1) when covariate effects are present, FDR regression improves power for a fixed false-discovery rate; and (2) when covariate effects are absent, the method is robust, in the sense that it does not lead to inflated error rates. We apply the method to neural recordings from primary visual cortex. The goal is to detect pairs of neurons that exhibit fine-time-scale interactions, in the sense that they fire together more often than expected due to chance. Our method detects roughly 50% more synchronous pairs versus a standard FDR-controlling analysis. The companion R package FDRreg implements all methods described in the paper.

stat.ME↗