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Pengwen Chen

Publications and source records attributed to Pengwen Chen.

13 recordsLinked to original sources

Semi-Supervised Laplace Learning on Stiefel Manifolds

Motivated by the need to address the degeneracy of canonical Laplace learning algorithms in low label rates, we propose to reformulate graph-based semi-supervised learning as a nonconvex generalization of a \emph{Trust-Region Subproblem} (TRS). This reformulation is motivated by the well-posedness of Laplacian eigenvectors in the limit of infinite unlabeled data. To solve this problem, we first show that a first-order condition implies the solution of a manifold alignment problem and that solutions to the classical \emph{Orthogonal Procrustes} problem can be used to efficiently find good classifiers that are amenable to further refinement. To tackle refinement, we develop the framework of Sequential Subspace Optimization for graph-based SSL. Next, we address the criticality of selecting supervised samples at low-label rates. We characterize informative samples with a novel measure of centrality derived from the principal eigenvectors of a certain submatrix of the graph Laplacian. We demonstrate that our framework achieves lower classification error compared to recent state-of-the-art and classical semi-supervised learning methods at extremely low, medium, and high label rates.

cs.LG

Sequential subspace methods on Stiefel manifold optimization

We investigate the minimization of a quadratic function over Stiefel manifolds (the set of all orthogonal $r$- frames in $\mathbf{R}^n$), which has applications in high-dimensional semi-supervised classification tasks. To reduce the computational complexity, we employ sequential subspace methods(SSM) to transform the high-dimensional problem to a series of low-dimensional ones. In this paper, our goal is to achieve an optimal solution of high quality, referred to as a ''qualified critical point". Qualified critical points are defined as those where the associated multiplier matrix meets specific upper-bound conditions. These points exhibit near-global optimality in quadratic optimization problems. In the context of a general quadratic, SSM generates a sequence of qualified critical points through low-dimensional surrogate regularized models. The convergence to a qualified critical point is guaranteed, when each SSM subspace is constructed from the following vectors: (i) a set of orthogonal unit vectors associated with the current iterate, (ii) a set of vectors representing the gradient of the objective, and (iii) a set of eigenvectors links to the smallest $r$ eigenvalues of the system matrix. Furthermore, incorporating Newton direction vectors into the subspaces can significantly accelerate the convergence of SSM.

math.OC

Noise-Robust One-Bit Diffraction Tomography and Optimal Dose Fractionation

This study presents a noise-robust framework for 1-bit diffraction tomography, a novel imaging approach that relies on intensity-only binary measurements obtained through coded apertures. The proposed reconstruction scheme leverages random matrix theory and iterative algorithms to effectively recover 3D object structures under high-noise conditions. A key contribution is the numerical investigation of dose fractionation, revealing optimal performance at a signal-to-noise ratio near 1, {\em independent of the total dose}. This finding addresses the question: How to distribute a given level of total radiation energy among different tomographic views in order to optimize the quality of reconstruction?

cs.IT

Matrix balancing based interior point methods for point set matching problems

Point sets matching problems can be handled by optimal transport. The mechanism behind it is that optimal transport recovers the point-to-point correspondence associated with the least curl deformation. Optimal transport is a special form of linear programming with dense constraints. Linear programming can be handled by interior point methods, provided that the involved ill-conditioned Hessians can be computed accurately. During the decade, matrix balancing has been employed to compute optimal transport under entropy regularization approaches. The solution quality in the interior point method relies on two ingredients: the accuracy of matrix balancing and the boundedness of the dual vector. To achieve high accurate matrix balancing, we employ Newton methods to implement matrix balancing of a sequence of matrices along one central path. In this work, we apply sparse support constraints to matrix-balancing based interior point methods, in which the sparse set fulfilling total support is iteratively updated to truncate the domain of the transport plan. Total support condition is one crucial condition, which guarantees the existence of matrix balancing as well as the boundedness of the dual vector.

math.OC

Local saddle structure in relaxed averaged alternating reflections Algorithms on phase retrieval

Phase retrieval can be expressed as one non-convex constrained optimization problem to identify one phase minimizer in the primal space. Many iterative transform techniques have been proposed to identify the minimizer, e.g., relaxed averaged alternating reflections(RAAR) algorithms. RAAR algorithm is one alternating direction method of multipliers(ADMM) with one penalty parameter. Pairing with multipliers (dual vectors), phase vectors are lifted to higher dimensional vectors, RAAR algorithms actually is one continuation algorithm, which searches for local Nash equilibria in a primal-dual space. The dual iteration approximates one gradient ascent flow, which drives the corresponding local minimizers in a positive-definite Hessian region. The penalty parameter, which is the reciprocal of the RAAR parameter, plays a role of altering the size of the attractor basin for each stationary point. Under proper penalty parameters, the RAAR avoids the stagnation of these corresponding local minimizers in the primal space and thus screens out many stationary points corresponding to non-local minimizers.

math.OC

Arnoldi algorithms with structured orthogonalization

We study a stability preserved Arnoldi algorithm for matrix exponential in the time domain simulation of large-scale power delivery networks (PDN), which are formulated as semi-explicit differential algebraic equations (DAEs). The solution can be decomposed to a sum of two projections, one in the range of the system operator and the other in its null space. The range projection can be computed with one shift-and -invert Krylov subspace method. The other projection can be computed with the algebraic equations. Differing from the ordinary Arnoldi method, the orthogonality in the Krylov subspace is replaced with the semi-inner product induced by the positive semi-definite system operator. With proper adjustment, numerical ranges of the Krylov operator lie in the right half plane, and we obtain theoretical convergence analysis for the modified Arnoldi algorithm in computing phi-functions. Lastly, simulations on RLC networks are demonstrated to validate the effectiveness of the Arnoldi algorithm with structured-orthogonalization.

math.NA

Coded Aperture Ptychography: Uniqueness and Reconstruction

Uniqueness of solution is proved for any ptychographic scheme with a random masks under a minimum overlap condition and local geometric convergence analysis is given for the alternating projection (AP) and Douglas-Rachford (DR) algorithms. DR is shown to possess a unique fixed point in the object domain and for AP a simple criterion for distinguishing the true solution among possibly many fixed points is given. A minimalist scheme is proposed where the adjacent masks overlap 50\% of area and each pixel of the object is illuminated by exactly four times during the whole measurement process. Such a scheme is conveniently parametrized by the number $q$ of shifted masks in each direction. The lower bound $1-C/q^2$ is proved for the geometric convergence rate of the minimalist scheme, predicting a poor performance with large $q$ which is confirmed by numerical experiments. Extensive numerical experiments are performed to explore what the general features of a well-performing mask are like, what the best-performing values of $q$ for a given mask are, how robust the minimalist scheme is with respect to measurement noise and what the significant factors affecting the noise stability are.

math.NA

ePlace-3D: Electrostatics based Placement for 3D-ICs

We propose a flat, analytic, mixed-size placement algorithm ePlace-3D for three-dimension integrated circuits (3D-ICs) using nonlinear optimization. Our contributions are (1) electrostatics based 3D density function with globally uniform smoothness (2) 3D numerical solution with improved spectral formulation (3) 3D nonlinear pre-conditioner for convergence acceleration (4) interleaved 2D-3D placement for efficiency enhancement. Our placer outperforms the leading work mPL6-3D and NTUplace3-3D with 6.44% and 37.15% shorter wirelength, 9.11% and 10.27% fewer 3D vertical interconnects (VI) on average of IBM-PLACE circuits. Validation on the large-scale modern mixed-size (MMS) 3D circuits shows high performance and scalability.

cs.OH

Phase Retrieval with One or Two Diffraction Patterns by Alternating Projection with Null Initialization

Alternating projection (AP) of various forms, including the Parallel AP (PAP), Real-constrained AP (RAP) and the Serial AP (SAP), are proposed to solve phase retrieval with at most two coded diffraction patterns. The proofs of geometric convergence are given with sharp bounds on the rates of convergence in terms of a spectral gap condition. To compensate for the local nature of convergence, the null initialization is proposed for initial guess and proved to produce asymptotically accurate initialization for the case of Gaussian random measurement. Numerical experiments show that the null initialization produces more accurate initial guess than the spectral initialization and that AP converges faster to the true object than other iterative schemes for non-convex optimization such as the Wirtinger Flow. In numerical experiments, AP with the null initialization converges globally to the true object.

physics.data-an

Recovering rank-one matrices via rank-r matrices relaxation

PhaseLift, proposed by E.J. Candès et al., is one convex relaxation approach for phase retrieval. The relaxation enlarges the solution set from rank one matrices to positive semidefinite matrices. In this paper, a relaxation is employed to nonconvex alternating minimization methods to recover the rank-one matrices. A generic measurement matrix can be standardized to a matrix consisting of orthonormal columns. To recover the rank-one matrix, the standardized frames are used to select the matrix with the maximal leading eigenvalue among the rank-$r$ matrices. Empirical studies are conducted to validate the effectiveness of this relaxation approach. In the case of Gaussian random matrices with a sufficient number of nearly orthogonal sensing vectors, we show that the singular vector corresponding to the least singular value is close to the unknown signal, and thus it can be a good initialization for the nonconvex minimization algorithm.

math.OC

FFTPL: An Analytic Placement Algorithm Using Fast Fourier Transform for Density Equalization

We propose a flat nonlinear placement algorithm FFTPL using fast Fourier transform for density equalization. The placement instance is modeled as an electrostatic system with the analogy of density cost to the potential energy. A well-defined Poisson's equation is proposed for gradient and cost computation. Our placer outperforms state-of-the-art placers with better solution quality and efficiency.

cs.CE

Detection of Gene-Gene Interactions by Multistage Sparse and Low-Rank Regression

A daunting challenge faced by modern biological sciences is finding an efficient and computationally feasible approach to deal with the curse of high dimensionality. The problem becomes even more severe when the research focus is on interactions. To improve the performance, we propose a low-rank interaction model, where the interaction effects are modeled using a low-rank matrix. With parsimonious parameterization of interactions, the proposed model increases the stability and efficiency of statistical analysis. Built upon the low-rank model, we further propose an Extended Screen-and-Clean approach, based on the Screen and Clean (SC) method (Wasserman and Roeder, 2009; Wu et al., 2010), to detect gene-gene interactions. In particular, the screening stage utilizes a combination of a low-rank structure and a sparsity constraint in order to achieve higher power and higher selection-consistency probability. We demonstrate the effectiveness of the method using simulations and apply the proposed procedure on the warfarin dosage study. The data analysis identified main and interaction effects that would have been neglected using conventional methods.

stat.ME