arXiv subjects

Peter J. Ramadge

Publications and source records attributed to Peter J. Ramadge.

25 records · Page 2Linked to original sources

arXiv2016

A Searchlight Factor Model Approach for Locating Shared Information in Multi-Subject fMRI Analysis

There is a growing interest in joint multi-subject fMRI analysis. The challenge of such analysis comes from inherent anatomical and functional variability across subjects. One approach to resolving this is a shared response factor model. This assumes a shared and time synchronized stimulus across subjects. Such a model can often identify shared information, but it may not be able to pinpoint with high resolution the spatial location of this information. In this work, we examine a searchlight based shared response model to identify shared information in small contiguous regions (searchlights) across the whole brain. Validation using classification tasks demonstrates that we can pinpoint informative local regions.

stat.ML↗

arXiv2016

Feedback-Controlled Sequential Lasso Screening

One way to solve lasso problems when the dictionary does not fit into available memory is to first screen the dictionary to remove unneeded features. Prior research has shown that sequential screening methods offer the greatest promise in this endeavor. Most existing work on sequential screening targets the context of tuning parameter selection, where one screens and solves a sequence of $N$ lasso problems with a fixed grid of geometrically spaced regularization parameters. In contrast, we focus on the scenario where a target regularization parameter has already been chosen via cross-validated model selection, and we then need to solve many lasso instances using this fixed value. In this context, we propose and explore a feedback controlled sequential screening scheme. Feedback is used at each iteration to select the next problem to be solved. This allows the sequence of problems to be adapted to the instance presented and the number of intermediate problems to be automatically selected. We demonstrate our feedback scheme using several datasets including a dictionary of approximate size 100,000 by 300,000.

cs.LG↗

arXiv2016

The Symmetry of a Simple Optimization Problem in Lasso Screening

Recently dictionary screening has been proposed as an effective way to improve the computational efficiency of solving the lasso problem, which is one of the most commonly used method for learning sparse representations. To address today's ever increasing large dataset, effective screening relies on a tight region bound on the solution to the dual lasso. Typical region bounds are in the form of an intersection of a sphere and multiple half spaces. One way to tighten the region bound is using more half spaces, which however, adds to the overhead of solving the high dimensional optimization problem in lasso screening. This paper reveals the interesting property that the optimization problem only depends on the projection of features onto the subspace spanned by the normals of the half spaces. This property converts an optimization problem in high dimension to much lower dimension, and thus sheds light on reducing the computation overhead of lasso screening based on tighter region bounds.

cs.LG↗

arXiv2016

Screening Tests for Lasso Problems

This paper is a survey of dictionary screening for the lasso problem. The lasso problem seeks a sparse linear combination of the columns of a dictionary to best match a given target vector. This sparse representation has proven useful in a variety of subsequent processing and decision tasks. For a given target vector, dictionary screening quickly identifies a subset of dictionary columns that will receive zero weight in a solution of the corresponding lasso problem. These columns can be removed from the dictionary prior to solving the lasso problem without impacting the optimality of the solution obtained. This has two potential advantages: it reduces the size of the dictionary, allowing the lasso problem to be solved with less resources, and it may speed up obtaining a solution. Using a geometrically intuitive framework, we provide basic insights for understanding useful lasso screening tests and their limitations. We also provide illustrative numerical studies on several datasets.

cs.LG↗

arXiv2016

Enabling Factor Analysis on Thousand-Subject Neuroimaging Datasets

The scale of functional magnetic resonance image data is rapidly increasing as large multi-subject datasets are becoming widely available and high-resolution scanners are adopted. The inherent low-dimensionality of the information in this data has led neuroscientists to consider factor analysis methods to extract and analyze the underlying brain activity. In this work, we consider two recent multi-subject factor analysis methods: the Shared Response Model and Hierarchical Topographic Factor Analysis. We perform analytical, algorithmic, and code optimization to enable multi-node parallel implementations to scale. Single-node improvements result in 99x and 1812x speedups on these two methods, and enables the processing of larger datasets. Our distributed implementations show strong scaling of 3.3x and 5.5x respectively with 20 nodes on real datasets. We also demonstrate weak scaling on a synthetic dataset with 1024 subjects, on up to 1024 nodes and 32,768 cores.

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arXiv2016

A Convolutional Autoencoder for Multi-Subject fMRI Data Aggregation

Finding the most effective way to aggregate multi-subject fMRI data is a long-standing and challenging problem. It is of increasing interest in contemporary fMRI studies of human cognition due to the scarcity of data per subject and the variability of brain anatomy and functional response across subjects. Recent work on latent factor models shows promising results in this task but this approach does not preserve spatial locality in the brain. We examine two ways to combine the ideas of a factor model and a searchlight based analysis to aggregate multi-subject fMRI data while preserving spatial locality. We first do this directly by combining a recent factor method known as a shared response model with searchlight analysis. Then we design a multi-view convolutional autoencoder for the same task. Both approaches preserve spatial locality and have competitive or better performance compared with standard searchlight analysis and the shared response model applied across the whole brain. We also report a system design to handle the computational challenge of training the convolutional autoencoder.

stat.ML↗

arXiv2012

A Bayesian Boosting Model

We offer a novel view of AdaBoost in a statistical setting. We propose a Bayesian model for binary classification in which label noise is modeled hierarchically. Using variational inference to optimize a dynamic evidence lower bound, we derive a new boosting-like algorithm called VIBoost. We show its close connections to AdaBoost and give experimental results from four datasets.

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