arXiv subjects

Peter Nordbeck

Publications and source records attributed to Peter Nordbeck.

4 recordsLinked to original sources

arXiv2026

OpenMRF: A Modular, Vendor-Neutral Open-Source Framework for Reproducible Magnetic Resonance Fingerprinting using Pulseq

Purpose: Widespread adoption and methodological advancement of Magnetic Resonance Fingerprinting (MRF) are limited by the lack of unified, reproducible implementation frameworks and fragmented open-source tools. To address these barriers, we introduce OpenMRF - a comprehensive Pulseq-based solution - designed to enable consistent, reproducible, and transferable MRF research across vendors, sites, and field strengths. Methods: OpenMRF integrates modular Pulseq-based sequence design, Bloch-simulation-based dictionary creation directly from .seq files, and iterative low-rank subspace reconstruction. The framework was evaluated through digital phantom simulations, a multi-site ISMRM/NIST phantom study on Siemens MRI systems at 0.55 T, 1.5 T, and 3 T as well as GE and United Imaging 3 T platforms, and representative in vivo acquisitions in the liver (0.55 T), myocardium (1.5 T), and brain (3 T). Results: Simulations demonstrated high mapping accuracy in an ISMRM/NIST-like digital phantom, with low-rank reconstruction yielding deviations of 0.03+/-0.32 % (T1) and 0.12+/-1.94 % (T2). The multi-site phantom study yielded relaxation times consistent with reference values at all field strengths, with mean deviations of -0.1+/-2.9 % (T1), -1.5+/-8.7 % (T2), and -4.0+/-7.2 % (T1rho). In vivo acquisitions produced high-quality parameter maps across platforms and field strengths. Conclusion: OpenMRF provides a robust, open-source, end-to-end Pulseq-based solution for MRF that enables reproducible sequence implementation, physics-accurate dictionary simulation, and advanced reconstruction across vendors and field strengths. By providing a unified platform for method development, comparison, and multi-site validation, OpenMRF aims to accelerate reproducible and harmonized quantitative MRI research within the community.

physics.med-ph↗

arXiv2024

Real-time cardiac cine MRI -- A comparison of a diffusion probabilistic model with alternative state-of-the-art image reconstruction techniques for undersampled spiral acquisitions

ECG-gated cine imaging in breath-hold enables high-quality diagnostics in most patients, arrhythmia and inability to hold breath, however, can severely corrupt outcomes. Real-time cardiac MRI in free-breathing leverages robust and faster investigations regardless of these confounding factors. With the need for sufficient acceleration, adequate reconstruction methods, which transfer data into high quality images, are required. Undersampled spiral real-time acquisitions in free-breathing were conducted in a study with 16 healthy volunteers and 5 patients. Image reconstructions were performed using a novel score-based diffusion model, as well as a variational network and different compressed sensing approaches. The techniques were compared by means of an expert reader study, by calculating scalar metrics and difference images with respect to a segmented reference, and by a Bland-Altman analysis of cardiac functional parameters. In participants with irregular RR-cycles, spiral real-time acquisitions showed superior image quality with respect to the clinical reference standard. Reconstructions using the diffusion model, the variational network and l1-wavelets offered an overall comparable image quality, however sharpness was slightly increased by the diffusion approach. While slightly larger ejection fractions for the real-time acquisitions were exhibited with a bias of 1.6% for healthy subjects, differences in the data acquisition procedure resulted in uncertainties of 7.4%. The proposed real-time technique enables free-breathing acquisitions of spatio-temporal images with high-quality, covering the entire heart in less than one minute. Evaluation of the ejection fractions using the segmented reference can be significantly corrupted due to arrhythmias and averaging effects. Prolonged inference times of the diffusion model represent the main obstacle to overcome for clinical translation.

physics.med-ph↗

arXiv2024

Joint image reconstruction and segmentation of real-time cardiac MRI in free-breathing using a model based on disentangled representation learning

A joint image reconstruction and segmentation approach based on disentangled representation learning was trained to enable cardiac cine MR imaging in real-time and under free-breathing. An exploratory feasibility study tested the proposed method in undersampled real-time acquisitions based on an in-house developed spiral bSSFP pulse sequence in eight healthy participants and five patients with intermittent atrial fibrillation. Images and predicted LV segmentations were compared to the reference standard of ECG-gated segmented Cartesian cine in repeated breath-holds and corresponding manual segmentation. On a 5-point Likert scale, image quality of the real-time breath-hold approach and Cartesian cine was comparable in healthy participants (RT-BH: 1.99 $\pm$ .98, Cartesian: 1.94 $\pm$ .86, p=.052), but slightly inferior in free-breathing (RT-FB: 2.40 $\pm$ .98, p<.001). In patients with arrhythmia, image quality from both real-time approaches was favourable (RT-BH: 2.10 $\pm$ 1.28, p<.001, RT-FB: 2.40 $\pm$ 1.13, p<.001, Cartesian: 2.68 $\pm$ 1.13). Intra-observer reliability was good (ICC=.77, 95%-confidence interval [.75, .79], p<.001). In functional analysis, a positive bias was observed for ejection fractions derived from the proposed model compared to the clinical reference standard (RT-BH mean EF: 58.5 $\pm$ 5.6%, bias: +3.47%, 95%-confidence interval [-.86, 7.79%], RT-FB mean: 57.9 $\pm$ 10.6%, bias: +1.45%, [-3.02, 5.91%], Cartesian mean: 54.9 $\pm$ 6.7%). The introduced real-time MR imaging technique is capable of acquiring high-quality cardiac cine data in 1-2 minutes without the need for ECG gating and breath-holds. It thus offers a promising alternative to the current clinical practice of segmented acquisition, with shorter scan times, higher patient comfort and increased robustness to arrhythmia and patient incompliance.

eess.IV↗

arXiv2024

Rotary Excitation of non-sinusoidal pulsed magnetic fields: Towards non-invasive direct detection of cardiac conduction

Purpose: In the recent past, spin-locking MRI experiments were successfully applied for the direct detection of sinusoidal magnetic field oscillations in the sub-nT range. In the present study, this detection approach was extended to non-sinusoidal pulsed magnetic fields based on the Rotary Excitation (REX) mechanism. Methods: The new detection concept was examined by means of Bloch simulations, evaluating the interaction effect of spin-locked magnetization and low-frequency pulsed magnetic fields. The REX detection approach was validated under controlled conditions in phantom experiments at 3T. Gaussian and Sinc-shaped stimuli were investigated. In addition, the detection of artificial fields resembling a cardiac QRS complex, which is the most prominent peak visible on a Magnetocardiogram, was tested. Results: Bloch simulations demonstrated that the REX method has a high sensitivity to pulsed fields in the resonance case, which is met when the spin-lock frequency coincides with a non-zero Fourier component of the stimulus field. In the experiments, we found that magnetic stimuli of different durations and waveforms can be distinguished by their characteristic REX response spectrum. The detected REX amplitude was proportional to the stimulus peak amplitude (R2>0.98) and the lowest field detection was 1 nT. Furthermore, the detection of QRS-like fields with varying QRS durations yielded significant results in a phantom setup (p<0.001). Conclusion: REX detection can be transferred to non-sinusoidal pulsed magnetic fields and could provide a non-invasive, quantitative tool for spatially resolved assessment of cardiac biomagnetism. Potential applications include the direct detection and characterization of cardiac conduction.

physics.med-ph↗