arXiv subjects

Peyman Sheikhzadeh

Publications and source records attributed to Peyman Sheikhzadeh.

6 recordsLinked to original sources

arXiv2026

Beyond the Tumor: Recurrence-Prone Radiomics for Prognostication in Negative PSMA PET/CT scans of Prostate Cancer

In patients with biochemical recurrence of prostate cancer and negative PSMA PET/CT, radiomics features extracted from recurrence-prone organs can predict clinical progression and progression-free survival. In a cohort of 132 patients, combining PET/CT radiomics with clinical variables significantly improved prognostic performance (C-index 0.74 vs. 0.65). Model performance was influenced by reader diagnostic certainty and remained robust on external validation. These findings suggest that radiomics from visually negative scans capture subclinical disease and provide added value for risk stratification.

physics.med-ph↗

arXiv2024

PyTomography: A Python Library for Medical Image Reconstruction

There is a need for open-source libraries in emission tomography that (i) use modern and popular backend code to encourage community contributions and (ii) offer support for the multitude of reconstruction techniques available in recent literature, such as those that employ artificial intelligence. The purpose of this research was to create and evaluate a GPU-accelerated, open-source, and user-friendly image reconstruction library, designed to serve as a central platform for the development, validation, and deployment of various tomographic reconstruction algorithms. PyTomography was developed using Python and inherits the GPU-accelerated functionality of PyTorch and parallelproj for fast computations. Its flexible and modular design decouples system matrices, likelihoods, and reconstruction algorithms, simplifying the process of integrating new imaging modalities using various python tools. Example use cases demonstrate the software capabilities in parallel hole SPECT and listmode PET imaging. Overall, we have developed and publicly share PyTomography, a highly optimized and user-friendly software for medical image reconstruction, with a class hierarchy that fosters the development of novel imaging applications.

physics.med-ph↗

arXiv2024

Computationally Efficient Collimator-Detector Response Compensation in High Energy SPECT using 1D Convolutions and Rotations

Modeling of the collimator-detector response (CDR) in SPECT reconstruction enables improved resolution and accuracy, and is thus important for quantitative imaging applications such as dosimetry. The implementation of CDR modeling, however, can become a computational bottleneck when there are substantial components of septal penetration and scatter in the acquired data, since a direct convolution-based approach requires large 2D kernels. This work proposes a 1D convolution and rotation-based CDR model that reduces reconstruction times but maintains consistency with models that employ 2D convolutions. To enable open-source development and use of these models in image reconstruction, we release a SPECTPSFToolbox repository for the PyTomography project on GitHub.

physics.med-ph↗

arXiv2024

Uncertainty Propagation from Projections to Region Counts in Tomographic Imaging: Application to Radiopharmaceutical Dosimetry

Radiopharmaceutical therapies (RPTs) present a major opportunity to improve cancer therapy. Although many current RPTs use the same injected activity for all patients, there is interest in using absorbed dose measurements to enable personalized prescriptions. Image-based absorbed dose calculations incur uncertainties from calibration factors, partial volume effects and segmentation methods. While previously published dose estimation protocols incorporate these uncertainties, they do not account for uncertainty originating from the reconstruction process itself with the propagation of Poisson noise from projection data. This effect should be accounted for to adequately estimate the total uncertainty in absorbed dose estimates. This paper proposes a computationally practical algorithm that propagates uncertainty from projection data through clinical reconstruction algorithms to obtain uncertainties on the total measured counts within volumes of interest (VOIs). The algorithm is first validated on ${}^{177}$Lu and ${}^{225}$Ac phantom data by comparing estimated uncertainties from individual SPECT acquisitions to empirical estimates obtained from multiple acquisitions. It is then applied to (i) Monte Carlo and (ii) multi-time point ${}^{177}$Lu-DOTATATE and ${}^{225}$Ac-PSMA-617 patient data for time integrated activity (TIA) uncertainty estimation. The outcomes of this work are two-fold: (i) the proposed uncertainty algorithm is validated, and (ii) a blueprint is established for how the algorithm can be inform dosimetry protocols via TIA uncertainty estimation. The proposed algorithm is made publicly available in the open-source image reconstruction library PyTomography.

physics.med-ph↗

arXiv2021

Deep learning-based noise reduction in low dose SPECT Myocardial Perfusion Imaging: Quantitative assessment and clinical performance

Clinical SPECT-MPI images of 345 patients acquired from a dedicated cardiac SPECT in list-mode format were retrospectively employed to predict normal-dose images from low-dose data at the half, quarter, and one-eighth-dose levels. A generative adversarial network was implemented to predict non-gated normal-dose images in the projection space at the different reduced dose levels. Established metrics including the peak signal-to-noise ratio (PSNR), root mean squared error (RMSE), and structural similarity index metrics (SSIM) in addition to Pearson correlation coefficient analysis and derived parameters from Cedars-Sinai software were used to quantitatively assess the quality of the predicted normal-dose images. For clinical evaluation, the quality of the predicted normal-dose images was evaluated by a nuclear medicine specialist using a seven-point (-3 to +3) grading scheme. By considering PSNR, SSIM, and RMSE quantitative parameters among the different reduced dose levels, the highest PSNR (42.49) and SSIM (0.99), and the lowest RMSE (1.99) were obtained at the half-dose level in the reconstructed images. Pearson correlation coefficients were measured 0.997, 0.994, and 0.987 for the predicted normal-dose images at the half, quarter, and one-eighth-dose levels, respectively. Regarding the normal-dose images as the reference, the Bland-Altman plots sketched for the Cedars-Sinai selected parameters exhibited remarkably less bias and variance in the predicted normal-dose images compared with the low-dose data at the entire reduced dose levels. Overall, considering the clinical assessment performed by a nuclear medicine specialist, 100%, 80%, and 11% of the predicted normal-dose images were clinically acceptable at the half, quarter, and one-eighth-dose levels, respectively.

physics.med-ph↗

arXiv2019

Deep-Fill: Deep Learning Based Sinogram Domain Gap Filling in Positron Emission Tomography

One of the major challenges in design and developing of PET, scanners are the presence of inactive areas between the detector blocks which degrade the image spatial resolution and leads to streaking artifacts especially when we employ analytical image reconstruction. The aim of this study is to assess the feasibility of generating the gap-free PET image using the deep convolutional encoder-decoder in sinogram space. The gap-corrupted sinograms of simulated HRRT scanner, sinograms without gaps as ideal/ground truth and predicted sinograms owing to the implemented our deep-fill method were quantitatively compared. In total, 1293 phantom images divided into three main sets of training 1000, 150 Validation, and 143 test set. The 1000 training images were augmented using affine transformations with various sub-transforms including rotation (rotate randomly), translation to 12000 Image with 6 frequencies of 2 main methods. The Deep-Fill architecture consists of an encoder and a decoder part, and it is composed of convolution operation, max pooling, ReLU activation, concatenation, and up convolution layers. The gap image is going through the network along with all possible paths then the gap-free image was generated by decoder part of the network. The quality of the generated images was quantitatively assessed by different quality metrics in both sinogram space and reconstruction images. We demonstrated that deep learning based approaches applied to inter-detector gap filling can recover the missing data in sinogram with high quantitative accuracy and have the potential to significantly improve the reconstructed image quality and prevent degradation of PET image quantification.

physics.med-ph↗