arXiv subjects

Piero Baglioni

Publications and source records attributed to Piero Baglioni.

6 recordsLinked to original sources

arXiv2009

Logarithmic decay in single-particle relaxations of hydrated lysozyme powder

We present the self-dynamics of protein amino acids of hydrated lysozyme powder around the physiological temperature by means of molecular dynamics (MD) simulations. The self-intermediate scattering functions (SISF) of the amino acid residue center-of-mass and of the protein hydrogen atoms display a logarithmic decay over 3 decades of time, from 2 picoseconds to 2 nanoseconds, followed by an exponential alpha-relaxation. This kind of slow dynamics resembles the relaxation scenario within the beta-relaxation time range predicted by the mode coupling theory (MCT) in the vicinity of higher-order singularities. These results suggest a strong analogy between the single-particle dynamics of the protein and the dynamics of colloidal, polymeric and molecular glass-forming liquids.

cond-mat.soft↗

arXiv2008

Pressure Dependence of the Dynamic Crossover Temperatures in Protein and its Hydration Water

Recently we have shown experimental evidence for a fragile-to-strong dynamic crossover (FSC) phenomenon in hydration water around a globular protein (lysozyme) at ambient pressure. In this letter we show that when applying pressure to the protein-water system, the FSC crossover temperatures in hydration water of lysozyme tracks the similar Widom line emanating from the existence of a liquid-liquid critical point in a 1-D confined water (in MCM-41-S). The mean squared displacements (MSD) of hydrogen atoms in lysozyme and in its hydration water show a sudden change of slopes at the same characteristic temperature, which decreases with an increasing pressure. These results taken together give support of the idea that the dynamic crossover (or so-called glass transition) of the protein is a function of both temperature and pressure, following the FSC of its hydration water.

physics.bio-ph↗

arXiv2007

Observation of a Dynamic Crossover in RNA Hydration Water which Triggers the Glass Transition in the Biopolymer

High-resolution quasi-elastic neutron scattering spectroscopy was used to measure H2O and D2O hydrated RNA samples. The contribution of scattering from RNA was subtracted out by taking the difference of the signals between the two samples. The measurements were made at a series of temperatures from 270 K down to 180 K. The Relaxing-Cage Model was used to analyze the difference quasi-elastic spectra. We observed clear evidence of a fragile-to-strong dynamic crossover (FSC) at TL = 220 K in RNA hydration water. We further show that the mean-square displacement of the hydrogen atoms in both RNA and its hydration water exhibit a sharp change in slope at approximately the same temperature 220 K. This latter fact suggests that the dynamic transition (or the glass transition) in RNA is triggered by the abrupt change of mobility of the hydration water at its FSC temperature TL.

physics.bio-ph↗

arXiv2006

Experimental Evidence of Fragile-to-Strong Dynamic Crossover in DNA Hydration Water

We used high-resolution quasielastic neutron scattering spectroscopy to study the single-particle dynamics of water molecules on the surface of hydrated DNA samples. Both H2O and D2O hydrated samples were measured. The contribution of scattering from DNA is subtracted out by taking the difference of the signals between the two samples. The measurement was made at a series of temperatures from 270 K down to 185 K. The Relaxing-Cage Model was used to analyze the quasielastic spectra. This allowed us to extract a Q-independent average translational relaxation time of water molecules as a function of temperature. We observe clear evidence of a fragile-to-strong dynamic crossover (FSC) at TL = 222+-2 K by plotting log of average translational relaxation time vs. T. The coincidence of the dynamic transition temperature Tc of DNA, signaling the onset of anharmonic molecular motion, and the FSC temperature TL of the hydration water suggests that the change of mobility of the hydration water molecules across TL drives the dynamic transition in DNA.

cond-mat.other↗

arXiv2006

Observation of Fragile-to-Strong Dynamic Crossover in Protein Hydration Water

At low temperatures proteins exist in a glassy state, a state which has no conformational flexibility and shows no biological functions. In a hydrated protein, at and above 220 K, this flexibility is restored and the protein is able to sample more conformational sub-states, thus becomes biologically functional. This 'dynamical' transition of protein is believed to be triggered by its strong coupling with the hydration water, which also shows a similar dynamic transition. Here we demonstrate experimentally that this sudden switch in dynamic behavior of the hydration water on lysozyme occurs precisely at 220 K and can be described as a Fragile-to-Strong dynamic crossover (FSC). At FSC, the structure of hydration water makes a transition from predominantly high-density (more fluid state) to low-density (less fluid state) forms derived from existence of the second critical point at an elevated pressure.

cond-mat.soft↗

arXiv2005

An effective long-range attraction between protein molecules in solutions studied by small angle neutron scattering

Small angle neutron scattering intensity distributions taken from cytochrome C and lysozyme protein solutions show a rising intensity at very small wave vector, Q, which can be interpreted in terms of the presence of a weak long-range attraction between protein molecules. This interaction has a range several times that of the diameter of the protein molecule, much greater than the range of the screened electrostatic repulsion. We show evidence that this long-range attraction is closely related to the type of anion present and ion concentration in the solution.

cond-mat.soft↗