arXiv subjects

Piero Lafiosca

Publications and source records attributed to Piero Lafiosca.

10 recordsLinked to original sources

arXiv2026

CovAngelo: A hybrid quantum-classical computing platform for accurate and scalable drug discovery

We present a computational platform for modeling chemical reactions in complex molecular environments, focused on ligand-protein binding in drug discovery. The platform implements our new quantum-in-quantum-in-classical (QM/QM/MM) multiscale embedding model that integrates molecular dynamics with a quantum-information-enhanced density matrix embedding theory and quantum chemistry solvers, including explicit solvent. Quantum-information metrics are utilized to generate entanglement-consistent orbitals, enabling a high-accuracy description of strongly correlated regions. The framework supports multiple computational backends, including multi-CPU, NVIDIA multi-GPU architectures, and quantum hardware (IQM, IonQ, IBM) integrated under CUDA-Q, and is designed for compatibility with future fault-tolerant quantum systems. The new platform's capabilities are demonstrated by modeling covalent docking of zanubrutinib to Bruton's tyrosine kinase via a Michael addition mechanism, computing the full reaction energy profiles and energy barriers at a reduced computational cost relative to existing methods. As a 2nd-generation anticancer agent, zanubrutinib serves as a proof of concept for covalent inhibitor discovery. Accurate first-principles reaction barrier estimations provided by our method can contribute to reducing false positive and negative rates in drug discovery pipelines. Scalability is validated through benchmarks on GPU clusters, cloud-based CPU infrastructures. We demonstrate integration with quantum devices (up to 20 qubits), alongside resource estimates for fault-tolerant quantum computing, indicating potential speedups of up to 20x. Beyond single reactions, the platform supports the construction of reaction networks in chemical metric space, facilitating ligand screening and systematic exploration of reactive pathways.

physics.chem-ph↗

arXiv2025

Vertical Excitation Energies of Embedded Systems: The Vertical Excitation Model (VEM) within Polarizable QM/MM

Polarizable Quantum Mechanics/Molecular Mechanics (QM/MM) approaches based on fluctuating charges and dipoles (QM/FQ(F$\mu$)) are formulated within the state-specific Vertical Excitation Model (VEM) to compute vertical excitation energies of solvated systems. This methodology overcomes the limitations of the widely used Linear Response (LR) approach. While LR can capture the dynamic response of the solvent to the QM transition density, it neglects the solvent reorganization that follows solute relaxation upon electronic excitation. In contrast, the VEM framework explicitly accounts for this effect. Benchmark calculations of vertical excitation energies using QM/FQ(F$\mu$) are reported for a representative set of solutes - acrolein, acetone, caffeine, p-nitroaniline, coumarin 153, doxorubicin, and betaine-30 - comparing VEM with LR, corrected LR (cLR), and cLR 2 schemes. The results reveal notable variations in solvent response depending on the character of the electronic transition and demonstrate that optimal accuracy can be achieved by selecting the most appropriate model for each specific system and excitation.

physics.chem-ph↗

arXiv2025

Atomistic QM/Classical Modeling of Surface-Enhanced Infrared Absorption

We present a multiscale quantum mechanics/classical (QM/MM) approach for modeling surface-enhanced infrared absorption (SEIRA) spectra of molecules adsorbed on plasmonic nanostructures. The molecular subsystem is described at the density functional theory (DFT) level, while the plasmonic material is represented using fully atomistic, frequency-dependent Fluctuating Charges ($\omega$FQ) and Fluctuating Charges and Dipoles ($\omega$FQF$\mu$) models. These schemes enable an accurate and computationally efficient description of the plasmonic response of both graphene-based materials and noble metal nanostructures, achieving accuracy comparable to ab initio methods. The proposed methodology is applied to the calculation of SEIRA spectra of adenine adsorbed on gold nanoparticles and graphene sheets. The quality and robustness of the approach are assessed through comparison with surface-enhanced Raman scattering (SERS) spectra and available experimental data. The results demonstrate that the proposed framework provides a reliable route to simulate vibrational responses of plasmon-molecule hybrid systems.

physics.chem-ph↗

arXiv2025

plasmonX: an Open-Source Code for Nanoplasmonics

We present the first public release of plasmonX, a novel open-source code for simulating the plasmonic response of complex nanostructures. The code supports both fully atomistic and implicit descriptions of nanomaterials. In particular, it employs the frequency-dependent fluctuating charges ($\omega$FQ) and dipoles ($\omega$FQF$\mu$) models to describe the response properties of atomistic structures, including simple and $d$-metals, graphene-based structures, and multi-metal nanostructures. For implicit representations, the Boundary Element Method is implemented in both the dielectric polarizable continuum model (DPCM) and integral equation formalism (IEF-PCM) variants. The distribution also includes a post-processing module that enables analysis of electric field-induced properties such as charge density and electric field patterns.

cond-mat.mes-hall↗

arXiv2025

Quantum Dynamics of Dissipative Polarizable Media

Classical polarizable approaches have become the gold standard for simulating complex systems and processes in the condensed phase. These methods describe intrinsically dissipative polarizable media, requiring a formal definition within the framework of open quantum systems. We present a Hamiltonian formulation for the quantum dynamics of polarizable sources based on a generalized theory of the damped harmonic oscillator, using pseudo-boson theory to characterize their coherent state dynamics. We then apply our theory to the study of the optical response of two plasmonic systems. Furthermore, by exploiting the phase space formulation of quantum mechanics and the integrability of quadratic Hamiltonians, we derive a self-consistent relation for the emitted electric field of the polarizable medium under the semiclassical approximation, based on exact formulas for medium polarization. Finally, we derive the master equation describing the open dynamics of a quantum system interacting with the quantum polarizable medium, along with analytical expressions for correlation functions calculated over arbitrary Gaussian states.

quant-ph↗

arXiv2024

Mixed Atomistic-Implicit Quantum/Classical Approach to Molecular Nanoplasmonics

A multiscale QM/classical approach is presented, that is able to model the optical properties of complex nanostructures composed of a molecular system adsorbed on metal nanoparticles. The latter are described by a combined atomistic-continuum model, where the core is described using the implicit boundary element method (BEM) and the surface retains a fully atomistic picture and is treated employing the frequency-dependent fluctuating charge and fluctuating dipole ($\omega$FQF$\mu$) approach. The integrated QM/$\omega$FQF$\mu$-BEM model is numerically compared with state-of-the-art fully atomistic approaches, and the quality of the continuum/core partition is evaluated. The method is then extended to compute Surface-Enhanced Raman Scattering (SERS) within a Time-Dependent Density Functional Theory (TDDFT) framework.

physics.chem-ph↗

arXiv2024

Fully Polarizable Multiconfigurational Self-consistent Field/Fluctuating Charge Approach

A multiscale model based on the coupling of the multiconfigurational self-consistent field (MCSCF) method and the classical atomistic polarizable Fluctuating Charges (FQ) force field is presented. The resulting MCSCF/FQ approach is validated by exploiting the CASSCF scheme through application to compute vertical excitation energies of formaldehyde and para-nitroaniline in aqueous solution. The procedure is integrated with molecular dynamics simulations to capture the solute's conformational changes and the dynamic aspects of solvation. Comparative analysis with alternative solvent models, gas-phase calculations, and experimental data provides insights into the model's accuracy in reproducing solute-solvent molecular interactions and spectral signals.

physics.chem-ph↗

arXiv2024

Atomistic Multiscale Modeling of Colloidal Plasmonic Nanoparticles

A novel fully atomistic multiscale classical approach to model the optical response of solvated real-size plasmonic nanoparticles (NPs) is presented. The model is based on the coupling of the Frequency Dependent Fluctuating Charges and Fluctuating Dipoles ($\omega$FQF$\mu$), specifically designed to describe plasmonic substrates, and the polarizable Fluctuating Charges (FQ) classical force field to model the solvating environment. The resulting $\omega$FQF$\mu$/FQ approach accounts for the interactions between the radiation and the NP, as well as with the surrounding solvent molecules, by incorporating mutual interactions between the plasmonic substrate and solvent. $\omega$FQF$\mu$/FQ is validated against reference TD-DFTB/FQ calculations, demonstrating remarkable accuracy, particularly in reproducing plasmon resonance frequency shifts for structures below the quantum-size limit. The flexibility and reliability of the approach are also demonstrated by simulating the optical response of homogeneous and bimetallic NPs dissolved in pure solvents and solvent mixtures.

cond-mat.mes-hall↗

arXiv2024

Real-Time Formulation of Atomistic Electromagnetic Models for Plasmonics

Investigating nanoplasmonics using time-dependent approaches permits shedding light on the dynamic optical properties of plasmonic structures, which are intrinsically connected with their potential applications in photochemistry and photoreactivity. This work proposes a real-time extension of our recently developed fully atomistic approaches $\omega$FQ and $\omega$FQF$\mu$. These methods successfully reproduce quantum size effects in metal nanoparticles, including plasmon shifts for both simple and $d$-metals, even below the quantum size limit. Also, thanks to their atomistic nature and the phenomenological inclusion of quantum tunneling effects, they can effectively describe the optical response of subnanometer junctions. By incorporating real-time dynamics, the approach provides an efficient framework for studying the time-dependent optical behavior of metal nanostructures, including the decoherence of plasmon excitations.

cond-mat.mes-hall↗

arXiv2021

Fully Atomistic Modeling of Realistic Plasmonic Materials: Assessing the Performance of Iterative Solvers

The fully atomistic modeling of real-size plasmonic nanostructures is computationally demanding, therefore most calculations are limited to small-to-medium sized systems. However, plasmonic properties strongly depend on the actual shape and size of the samples. In this paper we substantially extend the applicability of classical, fully atomistic approaches by exploiting state-of-the-art numerical iterative Krylov-based techniques. In particular, we focus on the recently developed $\omega$FQ model, when specified to carbon nanotubes, graphene-based nanostructures and metal nanoparticles. The performance of Generalized Minimal Residual (GMRES) and Quasi-Minimum Residual (QMR) algorithms is studied, with special emphasis on the dependence of the convergence rate on the dimension of the structures (up to 1 million atoms) and the physical parameters entering the definition of the atomistic approach.

physics.comp-ph↗