arXiv subjects

Pierre Barbillon

Publications and source records attributed to Pierre Barbillon.

25 records · Page 2Linked to original sources

arXiv2018

CaliCo: a R package for Bayesian calibration

In this article, we present a recently released R package for Bayesian calibration. Many industrial fields are facing unfeasible or costly field experiments. These experiments are replaced with numerical/computer experiments which are realized by running a numerical code. Bayesian calibration intends to estimate, through a posterior distribution, input parameters of the code in order to make the code outputs close to the available experimental data. The code can be time consuming while the Bayesian calibration implies a lot of code calls which makes studies too burdensome. A discrepancy might also appear between the numerical code and the physical system when facing incompatibility between experimental data and numerical code outputs. The package CaliCo deals with these issues through four statistical models which deal with a time consuming code or not and with discrepancy or not. A guideline for users is provided in order to illustrate the main functions and their arguments. Eventually, a toy example is detailed using CaliCo. This example (based on a real physical system) is in five dimensions and uses simulated data.

stat.CO↗

arXiv2018

Adaptive numerical designs for the calibration of computer codes

Making good predictions of a physical system using a computer code requires the inputs to be carefully specified. Some of these inputs called control variables have to reproduce physical conditions whereas other inputs, called parameters, are specific to the computer code and most often uncertain. The goal of statistical calibration consists in estimating these parameters with the help of a statistical model which links the code outputs with the field measurements. In a Bayesian setting, the posterior distribution of these parameters is normally sampled using MCMC methods. However, they are impractical when the code runs are high time-consuming. A way to circumvent this issue consists of replacing the computer code with a Gaussian process emulator, then sampling a cheap-to-evaluate posterior distribution based on it. Doing so, calibration is subject to an error which strongly depends on the numerical design of experiments used to fit the emulator. We aim at reducing this error by building a proper sequential design by means of the Expected Improvement criterion. Numerical illustrations in several dimensions assess the efficiency of such sequential strategies.

stat.CO↗

arXiv2015

Parametric estimation of complex mixed models based on meta-model approach

Complex biological processes are usually experimented along time among a collection of individuals. Longitudinal data are then available and the statistical challenge is to better understand the underlying biological mechanisms. The standard statistical approach is mixed-effects model, with regression functions that are now highly-developed to describe precisely the biological processes (solutions of multi-dimensional ordinary differential equations or of partial differential equation). When there is no analytical solution, a classical estimation approach relies on the coupling of a stochastic version of the EM algorithm (SAEM) with a MCMC algorithm. This procedure needs many evaluations of the regression function which is clearly prohibitive when a time-consuming solver is used for computing it. In this work a meta-model relying on a Gaussian process emulator is proposed to replace this regression function. The new source of uncertainty due to this approximation can be incorporated in the model which leads to what is called a mixed meta-model. A control on the distance between the maximum likelihood estimates in this mixed meta-model and the maximum likelihood estimates obtained with the exact mixed model is guaranteed. Eventually, numerical simulations are performed to illustrate the efficiency of this approach.

math.ST↗

arXiv2015

Stochastic Block Models for Multiplex networks: an application to networks of researchers

Modeling relations between individuals is a classical question in social sciences and clustering individuals according to the observed patterns of interactions allows to uncover a latent structure in the data. Stochastic block model (SBM) is a popular approach for grouping the individuals with respect to their social comportment. When several relationships of various types can occur jointly between the individuals, the data are represented by multiplex networks where more than one edge can exist between the nodes. In this paper, we extend the SBM to multiplex networks in order to obtain a clustering based on more than one kind of relationship. We propose to estimate the parameters --such as the marginal probabilities of assignment to groups (blocks) and the matrix of probabilities of connections between groups-- through a variational Expectation-Maximization procedure. Consistency of the estimates as well as statistical properties of the model are obtained. The number of groups is chosen thanks to the Integrated Completed Likelihood criteria, a penalized likelihood criterion. Multiplex Stochastic Block Model arises in many situations but our applied example is motivated by a network of French cancer researchers. The two possible links (edges) between researchers are a direct connection or a connection through their labs. Our results show strong interactions between these two kinds of connections and the groups that are obtained are discussed to emphasize the common features of researchers grouped together.

stat.ME↗

arXiv2014

Network impact on persistence in a finite population dynamic diffusion model: application to an emergent seed exchange network

Dynamic extinction colonisation models (also called contact processes) are widely studied in epidemiology and in metapopulation theory. Contacts are usually assumed to be possible only through a network of connected patches. This network accounts for a spatial landscape or a social organisation of interactions. Thanks to social network literature, heterogeneous networks of contacts can be considered. A major issue is to assess the influence of the network in the dynamic model. Most work with this common purpose uses deterministic models or an approximation of a stochastic Extinction-Colonisation model (sEC) which are relevant only for large networks. When working with a limited size network, the induced stochasticity is essential and has to be taken into account in the conclusions. Here, a rigorous framework is proposed for limited size networks and the limitations of the deterministic approximation are exhibited. This framework allows exact computations when the number of patches is small. Otherwise, simulations are used and enhanced by adapted simulation techniques when necessary. A sensitivity analysis was conducted to compare four main topologies of networks in contrasting settings to determine the role of the network. A challenging case was studied in this context: seed exchange of crop species in the Réseau Semences Paysannes (RSP), an emergent French farmers' organisation. A stochastic Extinction-Colonisation model was used to characterize the consequences of substantial changes in terms of RSP's social organisation on the ability of the system to maintain crop varieties.

stat.OT↗

arXiv2012

Bounding rare event probabilities in computer experiments

We are interested in bounding probabilities of rare events in the context of computer experiments. These rare events depend on the output of a physical model with random input variables. Since the model is only known through an expensive black box function, standard efficient Monte Carlo methods designed for rare events cannot be used. We then propose a strategy to deal with this difficulty based on importance sampling methods. This proposal relies on Kriging metamodeling and is able to achieve sharp upper confidence bounds on the rare event probabilities. The variability due to the Kriging metamodeling step is properly taken into account. The proposed methodology is applied to a toy example and compared to more standard Bayesian bounds. Finally, a challenging real case study is analyzed. It consists of finding an upper bound of the probability that the trajectory of an airborne load will collide with the aircraft that has released it.

stat.CO↗

arXiv2011

Maximin design on non hypercube domain and kernel interpolation

In the paradigm of computer experiments, the choice of an experimental design is an important issue. When no information is available about the black-box function to be approximated, an exploratory design have to be used. In this context, two dispersion criteria are usually considered: the minimax and the maximin ones. In the case of a hypercube domain, a standard strategy consists of taking the maximin design within the class of Latin hypercube designs. However, in a non hypercube context, it does not make sense to use the Latin hypercube strategy. Moreover, whatever the design is, the black-box function is typically approximated thanks to kernel interpolation. Here, we first provide a theoretical justification to the maximin criterion with respect to kernel interpolations. Then, we propose simulated annealing algorithms to determine maximin designs in any bounded connected domain. We prove the convergence of the different schemes.

stat.CO↗