arXiv subjects

Pierre Ronceray

Publications and source records attributed to Pierre Ronceray.

29 records · Page 2Linked to original sources

arXiv2018

Stress-dependent amplification of active forces in nonlinear elastic media

The production of mechanical stresses in living organisms largely relies on localized, force-generating active units embedded in filamentous matrices. Numerical simulations of discrete fiber networks with fixed boundaries have shown that buckling in the matrix dramatically amplifies the resulting active stresses. Here we extend this result to a bucklable continuum elastic medium subjected to an arbitrary external stress, and derive analytical expressions for the active, nonlinear constitutive relations characterizing the full active medium. Inserting these relations into popular "active gel" descriptions of living tissues and the cytoskeleton will enable investigations into nonlinear regimes previously inaccessible due to the phenomenological nature of these theories.

physics.bio-ph↗

arXiv2018

Structural Covariance in the Hard Sphere Fluid

We study the joint variability of structural information in a hard sphere fluid biased to avoid crystallisation and form fivefold symmetric geometric motifs. We show that the structural covariance matrix approach, originally proposed for on-lattice liquids [Ronceray and Harrowell, JCP 2016], can be meaningfully employed to understand structural relationships between different motifs and can predict, within the linear-response regime, structural changes related to motifs distinct from that used to bias the system.

cond-mat.dis-nn↗

arXiv2017

Cell contraction induces long-ranged stress stiffening in the extracellular matrix

Animal cells in tissues are supported by biopolymer matrices, which typically exhibit highly nonlinear mechanical properties. While the linear elasticity of the matrix can significantly impact cell mechanics and functionality, it remains largely unknown how cells, in turn, affect the nonlinear mechanics of their surrounding matrix. Here we show that living contractile cells are able to generate a massive stiffness gradient in three distinct 3D extracellular matrix model systems: collagen, fibrin, and Matrigel. We decipher this remarkable behavior by introducing Nonlinear Stress Inference Microscopy (NSIM), a novel technique to infer stress fields in a 3D matrix from nonlinear microrheology measurement with optical tweezers. Using NSIM and simulations, we reveal a long-ranged propagation of cell-generated stresses resulting from local filament buckling. This slow decay of stress gives rise to the large spatial extent of the observed cell-induced matrix stiffness gradient, which could form a mechanism for mechanical communication between cells.

physics.bio-ph↗

arXiv2017

Suppression of crystalline fluctuations by competing structures in a supercooled liquid

We propose a geometrical characterization of amorphous liquid structures that suppress crystallization by competing locally with crystalline order. We introduce for this purpose the crystal affinity of a liquid, a simple measure of its propensity to accumulate local crystalline structures on cooling. This quantity is explicitly related to the high temperature structural covariance between local fluctuations in crystal order and that of competing liquid structures: favouring a structure that, due to poor overlap properties, anticorrelates with crystalline order reduces the affinity of the liquid. Using a lattice model of a liquid, we show that this quantity successfully predicts the tendency of a liquid to either accumulate or suppress local crystalline fluctuations with increasing supercooling. We demonstrate that the crystal affinity correlates strongly with the crystal nucleation rate and the crystal-liquid interfacial free energy of the low-temperature liquid, making our theory a predictive tool to determine easily which amorphous structures enhance glass-forming ability.

cond-mat.soft↗

arXiv2016

The free energy of a liquid when viewed as a population of overlapping clusters

The expression of the free energy of a liquid in terms of an explicit decomposition of the particle configurations into local coordination clusters is examined. We argue that the major contribution to the entropy associated with structural fluctuations arises from the local athermal constraints imposed by the overlap of adjacent coordination shells. In the context of the recently developed Favoured Local Structure model [Soft Matt. 11, 3322 (2015)], we derive explicit expressions for the structural energy and entropy in the high temperature limit, compare this approximation with simulation data and consider the extension of this free energy to the case of spatial inhomogeneity in the distribution of local structures.

cond-mat.soft↗

arXiv2016

From Liquid Structure to Configurational Entropy: Introducing Structural Covariance

We connect the configurational entropy of a liquid to the geometrical properties of its local energy landscape, using a high-temperature expansion. It is proposed that correlations between local structures arises from their overlap and, being geometrical in nature, can be usefully determined using the inherent structures of high temperature liquids. We show quantitatively how the high-temperature covariance of these local structural fluctuations arising from their geometrical overlap, combined with their energetic stability, control the decrease of entropy with decreasing energy. We apply this formalism to a family of Favoured Local Structure (FLS) lattice models with two low symmetry FLS's which are found to either crystallize or form a glass on cooling. The covariance, crystal energy and estimated freezing temperature are tested as possible predictors of glass-forming ability in the model system.

cond-mat.soft↗

arXiv2015

Fiber networks amplify active stress

Large-scale force generation is essential for biological functions such as cell motility, embryonic development, and muscle contraction. In these processes, forces generated at the molecular level by motor proteins are transmitted by disordered fiber networks, resulting in large-scale active stresses. While these fiber networks are well characterized macroscopically, this stress generation by microscopic active units is not well understood. Here we theoretically study force transmission in these networks, and find that local active forces are rectified towards isotropic contraction and strongly amplified as fibers collectively buckle in the vicinity of the active units. This stress amplification is reinforced by the networks' disordered nature, but saturates for high densities of active units. Our predictions are quantitatively consistent with experiments on reconstituted tissues and actomyosin networks, and shed light on the role of the network microstructure in shaping active stresses in cells and tissue.

cond-mat.soft↗

arXiv2015

Favoured Local Structures in Liquids and Solids: a 3D Lattice Model

We investigate the connection between the geometry of Favoured Local Structures (FLS) in liquids and the associated liquid and solid properties. We introduce a lattice spin model - the FLS model on a face-centered cubic lattice - where this geometry can be arbitrarily chosen among a discrete set of 115 possible FLS. We find crystalline groundstates for all choices of a single FLS. Sampling all possible FLS's, we identify the following trends: i) low symmetry FLS's produce larger crystal unit cells but not necessarily higher energy groundstates, ii) chiral FLS's exhibit to peculiarly poor packing properties, iii) accumulation of FLS's in supercooled liquids is linked to large crystal unit cells, and iv) low symmetry FLS's tend to find metastable structures on cooling.

cond-mat.soft↗

arXiv2014

Connecting local active forces to macroscopic stress in elastic media

In contrast with ordinary materials, living matter drives its own motion by generating active, out-of-equilibrium internal stresses. These stresses typically originate from localized active elements embedded in an elastic medium, such as molecular motors inside the cell or contractile cells in a tissue. While many large-scale phenomenological theories of such active media have been developed, a systematic understanding of the emergence of stress from the local force-generating elements is lacking. In this paper, we present a rigorous theoretical framework to study this relationship. We show that the medium's macroscopic active stress tensor is equal to the active elements' force dipole tensor per unit volume in both continuum and discrete linear homogeneous media of arbitrary geometries. This relationship is conserved on average in the presence of disorder, but can be violated in nonlinear elastic media. Such effects can lead to either a reinforcement or an attenuation of the active stresses, giving us a glimpse of the ways in which nature might harness microscopic forces to create active materials.

cond-mat.soft↗

arXiv2013

Multiple ordering transitions in a chiral liquid

We present here a numerical study of a lattice model of a chiral liquid. The low symmetry of the favoured local structure depresses the freezing point to reveal an exotic liquid-liquid transition characterised by the appearance of an extended chirality,prior to freezing. What mechanisms impede crystallisation in liquids with low molecular symmetry ? The ordered liquid can be readily supercooled to zero temperature, as the combination of critical slowing down and competing crystal polymorphs results in a dramatically slow crystallisation process.

cond-mat.soft↗

arXiv2013

Freezing Transitions in Liquids Characterized by a Favoured Local Structure

The ordering transitions of a 2D lattice liquid characterized by a single favoured local structure (FLS) are studied using Monte Carlo simulations. All eight distinct geometries for the FLS are considered and we find a variety of ordering transitions - first order, continuous and multi-step transitions. Using a microcanonical representation of the freezing transition we resolve the dual influence of the local structure on the ordering transition, i.e. via the energy of the crystal and the entropy cost of structure in the liquid.

cond-mat.stat-mech↗