arXiv subjects

Pierre-Philippe Dechant

Publications and source records attributed to Pierre-Philippe Dechant.

At least 19 recordsLinked to original sources

arXiv2024

Machine Learning Clifford invariants of ADE Coxeter elements

There has been recent interest in novel Clifford geometric invariants of linear transformations. This motivates the investigation of such invariants for a certain type of geometric transformation of interest in the context of root systems, reflection groups, Lie groups and Lie algebras: the Coxeter transformations. We perform exhaustive calculations of all Coxeter transformations for $A_8$, $D_8$ and $E_8$ for a choice of basis of simple roots and compute their invariants, using high-performance computing. This computational algebra paradigm generates a dataset that can then be mined using techniques from data science such as supervised and unsupervised machine learning. In this paper we focus on neural network classification and principal component analysis. Since the output -- the invariants -- is fully determined by the choice of simple roots and the permutation order of the corresponding reflections in the Coxeter element, we expect huge degeneracy in the mapping. This provides the perfect setup for machine learning, and indeed we see that the datasets can be machine learned to very high accuracy. This paper is a pump-priming study in experimental mathematics using Clifford algebras, showing that such Clifford algebraic datasets are amenable to machine learning, and shedding light on relationships between these novel and other well-known geometric invariants and also giving rise to analytic results.

cs.LG↗

arXiv2024

Cluster Algebras: Network Science and Machine Learning

Cluster algebras have recently become an important player in mathematics and physics. In this work, we investigate them through the lens of modern data science, specifically with techniques from network science and machine learning. Network analysis methods are applied to the exchange graphs for cluster algebras of varying mutation types. The analysis indicates that when the graphs are represented without identifying by permutation equivalence between clusters an elegant symmetry emerges in the quiver exchange graph embedding. The ratio between number of seeds and number of quivers associated to this symmetry is computed for finite Dynkin type algebras up to rank 5, and conjectured for higher ranks. Simple machine learning techniques successfully learn to classify cluster algebras using the data of seeds. The learning performance exceeds 0.9 accuracies between algebras of the same mutation type and between types, as well as relative to artificially generated data.

math.CO↗

arXiv2022

Clustering Cluster Algebras with Clusters

Classification of cluster variables in cluster algebras (in particular, Grassmannian cluster algebras) is an important problem, which has direct application to computations of scattering amplitudes in physics. In this paper, we apply the tableaux method to classify cluster variables in Grassmannian cluster algebras $\mathbb{C}[Gr(k,n)]$ up to $(k,n)=(3,12), (4,10)$, or $(4,12)$ up to a certain number of columns of tableaux, using HPC clusters. These datasets are made available on GitHub. Supervised and unsupervised machine learning methods are used to analyse this data and identify structures associated to tableaux corresponding to cluster variables. Conjectures are raised associated to the enumeration of tableaux at each rank and the tableaux structure which creates a cluster variable, with the aid of machine learning.

hep-th↗

arXiv2022

Root systems & Clifford algebras: from symmetries of viruses to $E_8$ & ADE correspondences

In this paper we discuss reflection groups and root systems, in particular non-crystallographic ones, and a Clifford algebra framework for both these concepts. A review of historical as well as more recent work on viral capsid symmetries motivates the focus on the icosahedral root system $H_3$. We discuss a notion of affine extension for non-crystallographic groups with applications to fullerenes and viruses. The icosahedrally ordered component of the nucleic acid within the virus capsid and the interaction between the two have shed light on the viral assembly process with interesting applications to antiviral therapies, drug delivery and nanotechnology. The Clifford algebra framework is very natural, as it uses precisely the structure that is already implicit in this root system and reflection group context, i.e. a vector space with an inner product. In addition, it affords a uniquely simple reflection formula, a double cover of group transformations, and more insight into the geometry, e.g. the geometry of the Coxeter plane. This approach made possible a range of root system induction proofs, such as the constructions of $E_8$ from $H_3$ and the exceptional 4D root systems from 3D root systems. This makes explicit various connections between what Arnold called Trinities (sets of three exceptional cases). In fact this generalises further since the induction construction contains additional cases, namely two infinite families of cases. It therefore actually yields $ADE$ correspondences between three sets of different mathematical concepts that are usually thought of separately as polytopes, subgroups of $SU(2)$ and $ADE$ Lie algebras. Here we connect them explicitly and in a unified way by thinking of them as three different sets of root systems.

math-ph↗

arXiv2021

Therapeutic Interfering Particles Exploiting Viral Replication and Assembly Mechanisms Show Promising Performance: A Modelling Study

Defective interfering particles arise spontaneously during a viral infection as mutants lacking essential parts of the viral genome. Their ability to replicate in the presence of the wild-type (WT) virus (at the expense of viable viral particles) is mimicked and exploited by therapeutic interfering particles. We propose a strategy for the design of therapeutic interfering RNAs (tiRNAs) against positive-sense single-stranded RNA viruses that assemble via packaging signal-mediated assembly. These tiRNAs contain both an optimised version of the virus assembly manual that is encoded by multiple dispersed RNA packaging signals and a replication signal for viral polymerase, but lack any protein coding information. We use an intracellular model for hepatitis C viral (HCV) infection that captures key aspects of the competition dynamics between tiRNAs and viral genomes for virally produced capsid protein and polymerase. We show that only a small increase in the assembly and replication efficiency of the tiRNAs compared with WT virus is required in order to achieve a treatment efficacy greater than 99%. This demonstrates that the proposed tiRNA design could be a promising treatment option for RNA viral infections.

q-bio.QM↗

arXiv2021

Clifford spinors and root system induction: $H_4$ and the Grand Antiprism

Recent work has shown that every 3D root system allows the construction of a correponding 4D root system via an `induction theorem'. In this paper, we look at the icosahedral case of $H_3\rightarrow H_4$ in detail and perform the calculations explicitly. Clifford algebra is used to perform group theoretic calculations based on the versor theorem and the Cartan-Dieudonné theorem, giving a simple construction of the Pin and Spin covers. Using this connection with $H_3$ via the induction theorem sheds light on geometric aspects of the $H_4$ root system (the $600$-cell) as well as other related polytopes and their symmetries, such as the famous Grand Antiprism and the snub 24-cell. The uniform construction of root systems from 3D and the uniform procedure of splitting root systems with respect to subrootsystems into separate invariant sets allows further systematic insight into the underlying geometry. All calculations are performed in the even subalgebra of Cl(3), including the construction of the Coxeter plane, which is used for visualising the complementary pairs of invariant polytopes, and are shared as supplementary computational work sheets. This approach therefore constitutes a more systematic and general way of performing calculations concerning groups, in particular reflection groups and root systems, in a Clifford algebraic framework.

math.GR↗

arXiv2019

Machine-learning a virus assembly fitness landscape

Realistic evolutionary fitness landscapes are notoriously difficult to construct. A recent cutting-edge model of virus assembly consists of a dodecahedral capsid with $12$ corresponding packaging signals in three affinity bands. This whole genome/phenotype space consisting of $3^{12}$ genomes has been explored via computationally expensive stochastic assembly models, giving a fitness landscape in terms of the assembly efficiency. Using latest machine-learning techniques by establishing a neural network, we show that the intensive computation can be short-circuited in a matter of minutes to astounding accuracy.

q-bio.BM↗

arXiv2018

From the Trinity $(A_3, B_3, H_3)$ to an ADE correspondence

In this paper we present novel $ADE$ correspondences by combining an earlier induction theorem of ours with one of Arnold's observations concerning Trinities, and the McKay correspondence. We first extend Arnold's indirect link between the Trinity of symmetries of the Platonic solids $(A_3, B_3, H_3)$ and the Trinity of exceptional 4D root systems $(D_4, F_4, H_4)$ to an explicit Clifford algebraic construction linking the two ADE sets of root systems $(I_2(n), A_1\times I_2(n), A_3, B_3, H_3)$ and $(I_2(n), I_2(n)\times I_2(n), D_4, F_4, H_4)$. The latter are connected through the McKay correspondence with the ADE Lie algebras $(A_n, D_n, E_6, E_7, E_8)$. We show that there are also novel indirect as well as direct connections between these ADE root systems and the new ADE set of root systems $(I_2(n), A_1\times I_2(n), A_3, B_3, H_3)$, resulting in a web of three-way ADE correspondences between three ADE sets of root systems.

math-ph↗

arXiv2016

A 3D spinorial view of 4D exceptional phenomena

We discuss a Clifford algebra framework for discrete symmetry groups (such as reflection, Coxeter, conformal and modular groups), leading to a surprising number of new results. Clifford algebras allow for a particularly simple description of reflections via `sandwiching'. This extends to a description of orthogonal transformations in general by means of `sandwiching' with Clifford algebra multivectors, since all orthogonal transformations can be written as products of reflections by the Cartan-Dieudonné theorem. We begin by viewing the largest non-crystallographic reflection/Coxeter group $H_4$ as a group of rotations in two different ways -- firstly via a folding from the largest exceptional group $E_8$, and secondly by induction from the icosahedral group $H_3$ via Clifford spinors. We then generalise the second way by presenting a construction of a 4D root system from any given 3D one. This affords a new -- spinorial -- perspective on 4D phenomena, in particular as the induced root systems are precisely the exceptional ones in 4D, and their unusual automorphism groups are easily explained in the spinorial picture; we discuss the wider context of Platonic solids, Arnold's trinities and the McKay correspondence. The multivector groups can be used to perform concrete group-theoretic calculations, e.g. those for $H_3$ and $E_8$, and we discuss how various representations can also be constructed in this Clifford framework; in particular, representations of quaternionic type arise very naturally.

math.RT↗

arXiv2016

Clifford algebra is the natural framework for root systems and Coxeter groups. Group theory: Coxeter, conformal and modular groups

In this paper, we make the case that Clifford algebra is the natural framework for root systems and reflection groups, as well as related groups such as the conformal and modular groups: The metric that exists on these spaces can always be used to construct the corresponding Clifford algebra. Via the Cartan-Dieudonné theorem all the transformations of interest can be written as products of reflections and thus via `sandwiching' with Clifford algebra multivectors. These multivector groups can be used to perform concrete calculations in different groups, e.g. the various types of polyhedral groups, and we treat the example of the tetrahedral group $A_3$ in detail. As an aside, this gives a constructive result that induces from every 3D root system a root system in dimension four, which hinges on the facts that the group of spinors provides a double cover of the rotations, the space of 3D spinors has a 4D euclidean inner product, and with respect to this inner product the group of spinors can be shown to be closed under reflections. In particular the 4D root systems/Coxeter groups induced in this way are precisely the exceptional ones, with the 3D spinorial point of view also explaining their unusual automorphism groups. This construction simplifies Arnold's trinities and puts the McKay correspondence into a wider framework. We finally discuss extending the conformal geometric algebra approach to the 2D conformal and modular groups, which could have interesting novel applications in conformal field theory, string theory and modular form theory.

math-ph↗

arXiv2016

The $E_8$ geometry from a Clifford perspective

This paper considers the geometry of $E_8$ from a Clifford point of view in three complementary ways. Firstly, in earlier work, I had shown how to construct the four-dimensional exceptional root systems from the 3D root systems using Clifford techniques, by constructing them in the 4D even subalgebra of the 3D Clifford algebra; for instance the icosahedral root system $H_3$ gives rise to the largest (and therefore exceptional) non-crystallographic root system $H_4$. Arnold's trinities and the McKay correspondence then hint that there might be an indirect connection between the icosahedron and $E_8$. Secondly, in a related construction, I have now made this connection explicit for the first time: in the 8D Clifford algebra of 3D space the $120$ elements of the icosahedral group $H_3$ are doubly covered by $240$ 8-component objects, which endowed with a `reduced inner product' are exactly the $E_8$ root system. It was previously known that $E_8$ splits into $H_4$-invariant subspaces, and we discuss the folding construction relating the two pictures. This folding is a partial version of the one used for the construction of the Coxeter plane, so thirdly we discuss the geometry of the Coxeter plane in a Clifford algebra framework. We advocate the complete factorisation of the Coxeter versor in the Clifford algebra into exponentials of bivectors describing rotations in orthogonal planes with the rotation angle giving the correct exponents, which gives much more geometric insight than the usual approach of complexification and search for complex eigenvalues. In particular, we explicitly find these factorisations for the 2D, 3D and 4D root systems, $D_6$ as well as $E_8$, whose Coxeter versor factorises as $W=\exp(\fracπ{30}B_C)\exp(\frac{11π}{30}B_2)\exp(\frac{7π}{30}B_3)\exp(\frac{13π}{30}B_4)$.

math.RT↗

arXiv2016

Rank-3 root systems induce root systems of rank 4 via a new Clifford spinor construction

In this paper, we show that via a novel construction every rank-3 root system induces a root system of rank 4. Via the Cartan-Dieudonné theorem, an even number of successive Coxeter reflections yields rotations that in a Clifford algebra framework are described by spinors. In three dimensions these spinors themselves have a natural four-dimensional Euclidean structure, and discrete spinor groups can therefore be interpreted as 4D polytopes. In fact, we show that these polytopes have to be root systems, thereby inducing Coxeter groups of rank 4, and that their automorphism groups include two factors of the respective discrete spinor groups trivially acting on the left and on the right by spinor multiplication. Special cases of this general theorem include the exceptional 4D groups $D_4$, $F_4$ and $H_4$, which therefore opens up a new understanding of applications of these structures in terms of spinorial geometry. In particular, 4D groups are ubiquitous in high energy physics. For the corresponding case in two dimensions, the groups $I_2(n)$ are shown to be self-dual, whilst via a similar construction in terms of octonions each rank-3 root system induces a root system in dimension 8; this root system is in fact the direct sum of two copies of the corresponding induced 4D root system.

math-ph↗

arXiv2016

The Birth of $E_8$ out of the Spinors of the Icosahedron

$E_8$ is prominent in mathematics and theoretical physics, and is generally viewed as an exceptional symmetry in an eight-dimensional space very different from the space we inhabit; for instance the Lie group $E_8$ features heavily in ten-dimensional superstring theory. Contrary to that point of view, here we show that the $E_8$ root system can in fact be constructed from the icosahedron alone and can thus be viewed purely in terms of three-dimensional geometry. The $240$ roots of $E_8$ arise in the 8D Clifford algebra of 3D space as a double cover of the $120$ elements of the icosahedral group, generated by the root system $H_3$. As a by-product, by restricting to even products of root vectors (spinors) in the 4D even subalgebra of the Clifford algebra, one can show that each 3D root system induces a root system in 4D, which turn out to also be exactly the exceptional 4D root systems. The spinorial point of view explains their existence as well as their unusual automorphism groups. This spinorial approach thus in fact allows one to construct all exceptional root systems within the geometry of three dimensions, which opens up a novel interpretation of these phenomena in terms of spinorial geometry.

math-ph↗

arXiv2014

Viruses and Fullerenes - Symmetry as a Common Thread?

We apply here the principle of affine symmetry to the nested fullerene cages (carbon onions) that arise in the context of carbon chemistry. Previous work on affine extensions of the icosahedral group has revealed a new organisational principle in virus structure and assembly. We adapt this group theoretic framework here to the physical requirements dictated by carbon chemistry, and show that we can derive mathematical models for carbon onions within this affine symmetry approach. This suggests the applicability of affine symmetry in a wider context in Nature, as well as offering a novel perspective on the geometric principles underpinning carbon chemistry.

math-ph↗

arXiv2013

A Clifford algebraic framework for Coxeter group theoretic computations

Real physical systems with reflective and rotational symmetries such as viruses, fullerenes and quasicrystals have recently been modeled successfully in terms of three-dimensional (affine) Coxeter groups. Motivated by this progress, we explore here the benefits of performing the relevant computations in a Geometric Algebra framework, which is particularly suited to describing reflections. Starting from the Coxeter generators of the reflections, we describe how the relevant chiral (rotational), full (Coxeter) and binary polyhedral groups can be easily generated and treated in a unified way in a versor formalism. In particular, this yields a simple construction of the binary polyhedral groups as discrete spinor groups. These in turn are known to generate Lie and Coxeter groups in dimension four, notably the exceptional groups D_4, F_4 and H_4. A Clifford algebra approach thus reveals an unexpected connection between Coxeter groups of ranks 3 and 4. We discuss how to extend these considerations and computations to the Conformal Geometric Algebra setup, in particular for the non-crystallographic groups, and construct root systems and quasicrystalline point arrays. We finally show how a Clifford versor framework sheds light on the geometry of the Coxeter element and the Coxeter plane for the examples of the two-dimensional non-crystallographic Coxeter groups I_2(n) and the three-dimensional groups A_3, B_3, as well as the icosahedral group H_3.

math-ph↗

arXiv2013

Platonic solids generate their four-dimensional analogues

In this paper, we show how regular convex 4-polytopes - the analogues of the Platonic solids in four dimensions - can be constructed from three-dimensional considerations concerning the Platonic solids alone. Via the Cartan-Dieudonne theorem, the reflective symmetries of the Platonic solids generate rotations. In a Clifford algebra framework, the space of spinors generating such three-dimensional rotations has a natural four-dimensional Euclidean structure. The spinors arising from the Platonic Solids can thus in turn be interpreted as vertices in four-dimensional space, giving a simple construction of the 4D polytopes 16-cell, 24-cell, the F_4 root system and the 600-cell. In particular, these polytopes have `mysterious' symmetries, that are almost trivial when seen from the three-dimensional spinorial point of view. In fact, all these induced polytopes are also known to be root systems and thus generate rank-4 Coxeter groups, which can be shown to be a general property of the spinor construction. These considerations thus also apply to other root systems such as A_1+I_2(n) which induces I_2(n)+I_2(n), explaining the existence of the grand antiprism and the snub 24-cell, as well as their symmetries. We discuss these results in the wider mathematical context of Arnol'd's trinities and the McKay correspondence. These results are thus a novel link between the geometries of three and four dimensions, with interesting potential applications on both sides of the correspondence, to real 3D systems with polyhedral symmetries such as (quasi)crystals and viruses, as well as 4D geometries arising for instance in Grand Unified Theories and String and M-Theory.

math-ph↗

arXiv2012

Affine extensions of non-crystallographic Coxeter groups induced by projection

In this paper, we show that affine extensions of non-crystallographic Coxeter groups can be derived via Coxeter-Dynkin diagram foldings and projections of affine extended versions of the root systems E_8, D_6 and A_4. We show that the induced affine extensions of the non-crystallographic groups H_4, H_3 and H_2 correspond to a distinguished subset of the Kac-Moody-type extensions considered in Dechant et al. This class of extensions was motivated by physical applications in icosahedral systems in biology (viruses), physics (quasicrystals) and chemistry (fullerenes). By connecting these here to extensions of E_8, D_6 and A_4, we place them into the broader context of crystallographic lattices such as E_8, suggesting their potential for applications in high energy physics, integrable systems and modular form theory. By inverting the projection, we make the case for admitting different number fields in the Cartan matrix, which could open up enticing possibilities in hyperbolic geometry and rational conformal field theory.

math-ph↗

arXiv2012

Novel Kac-Moody-type affine extensions of non-crystallographic Coxeter groups

Motivated by recent results in mathematical virology, we present novel asymmetric Z[tau]-integer-valued affine extensions of the non-crystallographic Coxeter groups H_2, H_3 and H_4 derived in a Kac-Moody-type formalism. In particular, we show that the affine reflection planes which extend the Coxeter group H_3 generate (twist) translations along 2-, 3- and 5-fold axes of icosahedral symmetry, and we classify these translations in terms of the Fibonacci recursion relation applied to different start values. We thus provide an explanation of previous results concerning affine extensions of icosahedral symmetry in a Coxeter group context, and extend this analysis to the case of the non-crystallographic Coxeter groups H_2 and H_4. These results will enable new applications of group theory in physics (quasicrystals), biology (viruses) and chemistry (fullerenes).

math-ph↗