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Pietro Ricci

Publications and source records attributed to Pietro Ricci.

5 recordsLinked to original sources

A unified perspective on wavelength selection for molecular composition inference from diffuse spectroscopy

Optical monitoring of living tissue targeting quantification of molecular composition is an active area of research. In the case of broadband spectroscopy, one can attempt to extract molecular, or more precisely, chromophore concentration from a broad-range spectrum of the reflected light. However, selecting the shortest wavelength range sufficient for quantitative optical monitoring remains an open problem. Various wavelength optimization methods are scattered throughout the literature, however, there is no unified view to date. Our work's motivation is to construct a wavelength selection framework by unifying existing selection approaches and propose a novel projection-based method that allows for the pre-identification of a wavelength range that is adequate for the final selection. The framework specifically focuses on proposing different methods that quantify match or mismatch between the chosen light-matter interaction model, defined by the chosen endmembers (e.g. molecular chromophores), and the measured intensity from the spectroscopic data. To evaluate the framework, we perform a retrospective analysis on a broadband spectroscopy dataset of piglets during an induced hypoxia-ischemia state. Overall, we show that our novel projection-based method can be used for band selection, and that existing approaches can be used in conjunction to select an optimal minimal wavelength set that satisfies biophysical model constraints.

physics.optics

Brain-wide functional imaging to highlight differences between the diurnal and nocturnal neuronal activity in zebrafish larvae

Most living organisms show highly conserved physiological changes following a 24-hour cycle which goes by the name of circadian rhythm. Among experimental models, the effects of light-dark cycle have been recently investigated in the larval zebrafish. Owing to its small size and transparency, this vertebrate enables optical access to the entire brain. Indeed, the combination of this organism with light-sheet imaging grants high spatio-temporal resolution volumetric recording of neuronal activity. This imaging technique, in its multiphoton variant, allows functional investigations without unwanted visual stimulation. Here, we employed a custom two-photon light-sheet microscope to study brain-wide differences in neuronal activity between diurnal and nocturnal periods in larval zebrafish assessed at the transition between day and night. We describe for the first time an activity increase in the low frequency domain of the pretectum and a frequency-localized activity decrease of the anterior rhombencephalic turning region during the nocturnal period. Moreover, our data confirm a nocturnal reduction in habenular activity. Furthermore, brain-wide detrended fluctuation analysis revealed a nocturnal decrease in the self-affinity of the neuronal signals in parts of the dorsal thalamus and the medulla oblongata and an increase in the pretectum. Our data show that brain-wide nonlinear light-sheet imaging represents a useful tool to investigate circadian rhythm effects on neuronal activity.

q-bio.NC

Four-channel radio-frequency signal generator programmed by an open-source Arduino-based control system via single or quad Serial Peripheral Interface

Radio-frequency (RF) signal generators are standard laboratory equipment and a wide-range of open-source and commercial devices exists to address their many applications. Nonetheless, only few expensive and proprietary solutions can be re-configured within a wide frequency band and triggered on a micro-second timescale. Such specifications are required for applications that use variable radio-frequencies to generate programmed mixed signals, to control processes or states and to precisely steer laser beams using acousto-optical devices, tasks often needed in industrial manufacturing, atomic and molecular physics or microscopy. Here we present an open-source low-cost Arduino-based control system that can store up to millions of commands received from a computer and then perform reliable high-speed programming of an arbitrary device under its control (DUC) via a single- or quad-wire Serial Peripheral Interface. The software architecture operates as a real-time state machine, making it easily extensible and adaptable to any DUC. Each configuration change can be triggered either externally or internally, reaching ~1 MHz rates when using a Teensy 4.1 Arduino-compatible board. Leveraging this flexible system, we developed a programmable four-channel RF signal generator, based on an Analog Devices 9959 Evaluation board, and we demonstrated its capability and validated its performance.

physics.ins-det

Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy

Light-sheet fluorescence microscopy (LSFM) enables real-time whole-brain functional imaging in zebrafish larvae. Conventional one photon LSFM can however induce undesirable visual stimulation due to the use of visible excitation light. The use of two-photon (2P) excitation, employing near-infrared invisible light, provides unbiased investigation of neuronal circuit dynamics. However, due to the low efficiency of the 2P absorption process, the imaging speed of this technique is typically limited by the signal-to-noise-ratio. Here, we describe a 2P LSFM setup designed for non-invasive imaging that enables quintuplicating state-of-the-art volumetric acquisition rate of the larval zebrafish brain (5 Hz) while keeping low the laser intensity on the specimen. We applied our system to the study of pharmacologically-induced acute seizures, characterizing the spatial-temporal dynamics of pathological activity and describing for the first time the appearance of caudo-rostral ictal waves (CRIWs).

q-bio.QM

Effects of excitation light polarization on fluorescence emission in two-photon light-sheet microscopy

Light-sheet microscopy (LSM) is a powerful imaging technique that uses a planar illumination oriented orthogonally to the detection axis. Two-photon (2P) LSM is a variant of LSM that exploits the 2P absorption effect for sample excitation. The light polarization state plays a significant, and often overlooked, role in 2P absorption processes. The scope of this work is to test whether using different polarization states for excitation light can affect the detected signal levels in 2P LSM imaging of typical biological samples with a spatially unordered dye population. Supported by a theoretical model, we compared the fluorescence signals obtained using different polarization states with various fluorophores (fluorescein, EGFP and GCaMP6s) and different samples (liquid solution and fixed or living zebrafish larvae). In all conditions, in agreement with our theoretical expectations, linear polarization oriented parallel to the detection plane provided the largest signal levels, while perpendicularly-oriented polarization gave low fluorescence signal with the biological samples, but a large signal for the fluorescein solution. Finally, circular polarization generally provided lower signal levels. These results highlight the importance of controlling the light polarization state in 2P LSM of biological samples. Furthermore, this characterization represents a useful guide to choose the best light polarization state when maximization of signal levels is needed, e.g. in high-speed 2P LSM.

physics.bio-ph