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Pinyao He

Publications and source records attributed to Pinyao He.

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A microscopic origin for the breakdown of the Stokes Einstein relation in ion transport

Ion transport underlies the operation of biological ion channels and governs the performance of electrochemical energy-storage devices. A long-standing anomaly is that smaller alkali metal ions, such as Li$^+$, migrate more slowly in water than larger ions, in apparent violation of the Stokes-Einstein relation. This breakdown is conventionally attributed to dielectric friction, a collective drag force arising from electrostatic interactions between a drifting ion and its surrounding solvent. Here, combining nanopore transport measurements over electric fields spanning several orders of magnitude with molecular dynamics simulations, we show that the time-averaged electrostatic force on a migrating ion is not a drag force but a net driving force. By contrasting charged ions with neutral particles, we reveal that ionic charge introduces additional Lorentzian peaks in the frequency-dependent friction coefficient. These peaks originate predominantly from short-range Lennard-Jones (LJ) interactions within the first hydration layer and represent additional channels for energy dissipation, strongest for Li$^+$ and progressively weaker for Na$^+$ and K$^+$. Our results demonstrate that electrostatic interactions primarily act to tighten the local hydration structure, thereby amplifying short-range LJ interactions rather than directly opposing ion motion. This microscopic mechanism provides a unified physical explanation for the breakdown of the Stokes-Einstein relation in aqueous ion transport.

cond-mat.soft

Single-Molecule Structure and Topology of Kinetoplast DNA Networks

The Kinetoplast DNA (kDNA) is a two-dimensional Olympic-ring-like network of mutually linked 2.5 kb-long DNA minicircles found in certain parasites called Trypanosomes. Understanding the self-assembly and replication of this structure are not only major open questions in biology but can also inform the design of synthetic topological materials. Here we report the first high-resolution, single-molecule study of kDNA network topology using AFM and steered molecular dynamics simulations. We map out the DNA density within the network and the distribution of linking number and valence of the minicircles. We also characterise the DNA hubs that surround the network and show that they cause a buckling transition akin to that of a 2D elastic thermal sheet in the bulk. Intriguingly, we observe a broad distribution of density and valence of the minicircles, indicating heterogeneous network structure and individualism of different kDNA structures. Our findings explain outstanding questions in the field and offer single-molecule insights into the properties of a unique topological material.

cond-mat.soft