arXiv subjects

Piotr Sułkowski

Publications and source records attributed to Piotr Sułkowski.

60 records · Page 4Linked to original sources

arXiv2009

Matrix models for 2* theories

We show how to represent a class of expressions involving discrete sums over partitions as matrix models. We apply this technique to the partition functions of 2* theories, i.e. Seiberg-Witten theories with the massive hypermultiplet in the adjoint representation. We consider theories in four, five and six dimensions, and obtain new matrix models respectively of rational, trigonometric and elliptic type. The matrix models for five- and six-dimensional U(1) theories are derived from the topological vertex construction related to curves of genus one and two.

hep-th↗

arXiv2008

Deformed boson-fermion correspondence, Q-bosons, and topological strings on the conifold

We consider two different physical systems for which the basis of the Hilbert space can be parametrized by Young diagrams: free complex fermions and the phase model of strongly correlated bosons. Both systems have natural, well-known deformations parametrized by a parameter Q: the former one is related to the deformed boson-fermion correspondence introduced by N. Jing, while the latter is the so-called Q-boson, arising also in the context of quantum groups. These deformations are equivalent and can be realized in the same way in the algebra of Hall-Littlewood symmetric functions. Without a deformation, these reduce to Schur functions, which can be used to construct a generating function of plane partitions, reproducing a topological string partition function on $C^3$. We show that a deformation of both systems leads then to a deformed generating function, which reproduces topological string partition function of the conifold, with the deformation parameter Q identified with the size of $P^1$. Similarly, a deformation of the fermion one-point function results in the A-brane partition function on the conifold.

hep-th↗

arXiv2008

How knots influence properties of proteins

Molecular dynamics studies within a coarse-grained structure based model were used on two similar proteins belonging to the transcarbamylase family to probe the effects in the native structure of a knot. The first protein, N-acetylornithine transcarbamylase, contains no knot whereas human ormithine transcarbamylase contains a trefoil knot located deep within the sequence. In addition, we also analyzed a modified transferase with the knot removed by the appropriate change of a knot-making crossing of the protein chain. The studies of thermally- and mechanically-induced unfolding processes suggest a larger intrinsic stability of the protein with the knot.

q-bio.BM↗

arXiv2008

Instantons on ALE spaces and orbifold partitions

We consider N=4 theories on ALE spaces of $A_{k-1}$ type. As is well known, their partition functions coincide with $A_{k-1}$ affine characters. We show that these partition functions are equal to the generating functions of some peculiar classes of partitions which we introduce under the name 'orbifold partitions'. These orbifold partitions turn out to be related to the generalized Frobenius partitions introduced by G. E. Andrews some years ago. We relate the orbifold partitions to the blended partitions and interpret explicitly in terms of a free fermion system.

hep-th↗

arXiv2007

Calabi-Yau crystals in topological string theory

This thesis is concerned with a realisation of topological theories in terms of statistical models known as Calabi-Yau crystals. The thesis starts with an introduction and review of topological field and string theories. Subsequently several new results are presented. The main focus of the thesis is on the topological string theory. In this case crystal models correspond to three-dimensional partitions and their relations with the topological vertex theory and knot invariants are studied. Two-dimensional crystal models corresponding to topological gauge theories on ALE spaces are also introduced and analysed. Essential mathematical tools are summarised in appendices.

hep-th↗

arXiv2007

Tightening of knots in proteins

We perform theoretical studies of stretching of 20 proteins with knots within a coarse grained model. The knot's ends are found to jump to well defined sequential locations that are associated with sharp turns whereas in homopolymers they diffuse around and eventually slide off. The waiting times of the jumps are increasingly stochastic as the temperature is raised. Larger knots do not return to their native locations when a protein is released after stretching.

q-bio.BM↗