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Pranav Rao

Publications and source records attributed to Pranav Rao.

9 recordsLinked to original sources

DiffusionXRay: A Diffusion and GAN-Based Approach for Enhancing Digitally Reconstructed Chest Radiographs

Deep learning-based automated diagnosis of lung cancer has emerged as a crucial advancement that enables healthcare professionals to detect and initiate treatment earlier. However, these models require extensive training datasets with diverse case-specific properties. High-quality annotated data is particularly challenging to obtain, especially for cases with subtle pulmonary nodules that are difficult to detect even for experienced radiologists. This scarcity of well-labeled datasets can limit model performance and generalization across different patient populations. Digitally reconstructed radiographs (DRR) using CT-Scan to generate synthetic frontal chest X-rays with artificially inserted lung nodules offers one potential solution. However, this approach suffers from significant image quality degradation, particularly in the form of blurred anatomical features and loss of fine lung field structures. To overcome this, we introduce DiffusionXRay, a novel image restoration pipeline for Chest X-ray images that synergistically leverages denoising diffusion probabilistic models (DDPMs) and generative adversarial networks (GANs). DiffusionXRay incorporates a unique two-stage training process: First, we investigate two independent approaches, DDPM-LQ and GAN-based MUNIT-LQ, to generate low-quality CXRs, addressing the challenge of training data scarcity, posing this as a style transfer problem. Subsequently, we train a DDPM-based model on paired low-quality and high-quality images, enabling it to learn the nuances of X-ray image restoration. Our method demonstrates promising results in enhancing image clarity, contrast, and overall diagnostic value of chest X-rays while preserving subtle yet clinically significant artifacts, validated by both quantitative metrics and expert radiological assessment.

cs.CV

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins

We introduce Ibex, a pan-immunoglobulin structure prediction model that achieves state-of-the-art accuracy in modeling the variable domains of antibodies, nanobodies, and T-cell receptors. Unlike previous approaches, Ibex explicitly distinguishes between bound and unbound protein conformations by training on labeled apo and holo structural pairs, enabling accurate prediction of both states at inference time. Using a comprehensive private dataset of high-resolution antibody structures, we demonstrate superior out-of-distribution performance compared to existing specialized and general protein structure prediction tools. Ibex combines the accuracy of cutting-edge models with significantly reduced computational requirements, providing a robust foundation for accelerating large molecule design and therapeutic development.

q-bio.BM

Fitting the Message to the Moment: Designing Calendar-Aware Stress Messaging with Large Language Models

Existing stress-management tools fail to account for the timing and contextual specificity of students' daily lives, often providing static or misaligned support. Digital calendars contain rich, personal indicators of upcoming responsibilities, yet this data is rarely leveraged for adaptive wellbeing interventions. In this short paper, we explore how large language models (LLMs) might use digital calendar data to deliver timely and personalized stress support. We conducted a one-week study with eight university students using a functional technology probe that generated daily stress-management messages based on participants' calendar events. Through semi-structured interviews and thematic analysis, we found that participants valued interventions that prioritized stressful events and adopted a concise, but colloquial tone. These findings reveal key design implications for LLM-based stress-management tools, including the need for structured questioning and tone calibration to foster relevance and trust.

cs.HC

Perfectly to a Tee: Understanding User Perceptions of Personalized LLM-Enhanced Narrative Interventions

Stories about overcoming personal struggles can effectively illustrate the application of psychological theories in real life, yet they may fail to resonate with individuals' experiences. In this work, we employ large language models (LLMs) to create tailored narratives that acknowledge and address unique challenging thoughts and situations faced by individuals. Our study, involving 346 young adults across two settings, demonstrates that personalized LLM-enhanced stories were perceived to be better than human-written ones in conveying key takeaways, promoting reflection, and reducing belief in negative thoughts. These stories were not only seen as more relatable but also similarly authentic to human-written ones, highlighting the potential of LLMs in helping young adults manage their struggles. The findings of this work provide crucial design considerations for future narrative-based digital mental health interventions, such as the need to maintain relatability without veering into implausibility and refining the wording and tone of AI-enhanced content.

cs.HC

Effective action approach to the filling anomaly in crystalline topological matter

In two dimensions, magnetic higher-order topological insulators (HOTIs) are characterized by excess boundary charge and a compensating bulk ``filling anomaly.'' At the same time, without additional noncrystalline symmetries, the boundaries of two-dimensional HOTIs are gapped and featureless at low energies, while the bulk of the system is predicted to have a topological response to the insertion of lattice (particularly disclination) defects. Until recently, a precise connection between these effects has remained elusive. In this work, we point the direction towards a unifying field-theoretic description for the bulk and boundary response of magnetic HOTIs. By focusing on the low-energy description of the gapped boundary of a two-dimensional magnetic HOTI with no time-reversing symmetries, we show that the boundary charge and filling anomaly arise from the gravitational ``Gromov-Jensen-Abanov'' (GJA) response action first introduced in [Phys. Rev. Lett. 116, 126802 (2016)] in the context of the quantum Hall effect. As in quantum Hall systems the GJA action cancels apparent anomalies associated with bulk response to disclinations, allowing us to derive a concrete connection between the bulk and boundary theories of HOTIs. We show how our results elucidate the connection between higher order topology and geometric response both in band insulators, and point towards a new route to understanding interacting higher order topological phases beyond the simple cases considered here.

cond-mat.mes-hall

Resolving Hall and dissipative viscosity ambiguities via boundary effects

We examine the physical implications of the viscous redundancy of two-dimensional anisotropic fluids, where different components of the viscosity tensor lead to identical effects in the bulk of a system [Rao and Bradlyn, Phys. Rev. X $\textbf{10}$, 021005 (2020)]. We first re-introduce the redundancy, show how it reflects a lack of knowledge of microscopic information of a system, and give microscopic examples. Next, we show that fluid flow in systems with a boundary can distinguish between otherwise redundant viscosity coefficients. In particular, we show how the dispersion and damping of gravity-dominated surface waves can be used to resolve the redundancies between both dissipative and Hall viscosities, and discuss how these results apply to recent experiments in chiral active fluids with nonvanishing Hall viscosity. Our results highlight the importance of divergenceless, magnetization-like contributions to the stress (which we dub ``contact terms''). Finally, we apply our results to the hydrodynamics of quantum Hall fluids, and show that the extra contribution to the action that renders the bulk Wen-Zee action gauge invariant in systems with a boundary can be reinterpreted in terms of the bulk viscous redundancy.

cond-mat.mes-hall

Hierarchical Learning in Euclidean Neural Networks

Equivariant machine learning methods have shown wide success at 3D learning applications in recent years. These models explicitly build in the reflection, translation and rotation symmetries of Euclidean space and have facilitated large advances in accuracy and data efficiency for a range of applications in the physical sciences. An outstanding question for equivariant models is why they achieve such larger-than-expected advances in these applications. To probe this question, we examine the role of higher order (non-scalar) features in Euclidean Neural Networks (\texttt{e3nn}). We focus on the previously studied application of \texttt{e3nn} to the problem of electron density prediction, which allows for a variety of non-scalar outputs, and examine whether the nature of the output (scalar $l=0$, vector $l=1$, or higher order $l>1$) is relevant to the effectiveness of non-scalar hidden features in the network. Further, we examine the behavior of non-scalar features throughout training, finding a natural hierarchy of features by $l$, reminiscent of a multipole expansion. We aim for our work to ultimately inform design principles and choices of domain applications for {\tt e3nn} networks.

cs.LG

Cubic Hall viscosity in three-dimensional topological semimetals

The nondissipative (Hall) viscosity is known to play an interesting role in two-dimensional (2D) topological states of matter, in the hydrodynamic regime of correlated materials, and in classical active fluids with broken time-reversal symmetry (TRS). However, generalizations of these effects to 3D have remained elusive. In this work, we address this question by studying the Hall viscoelastic response of 3D crystals. We show that for systems with tetrahedral symmetries, there exist new, intrinsically 3D Hall viscosity coefficients that cannot be obtained via a reduction to a quasi-2D system. To study these coefficients, we specialize to a theoretically and experimentally motivated tight-binding model for a chiral magnetic metal in (magnetic) space group [(M)SG] P2$_1$3 (No. 198.9), a nonpolar group of recent experimental interest that hosts both chiral magnets and topological semimetals (TSMs). Using the Kubo formula for viscosity, we compute two forms of the Hall viscosity, phonon and ``momentum'' (conventional) and show that for the tight-binding model we consider, both forms realize the novel cubic Hall viscosity. We conclude by discussing the implication of our results for transport in 2D magnetic metals and discuss some candidate materials in which these effects may be observed.

cond-mat.mes-hall

Hall viscosity in quantum systems with discrete symmetry: point group and lattice anisotropy

Inspired by recent experiments on graphene, we examine the non-dissipative viscoelastic response of anisotropic two-dimensional quantum systems. We pay particular attention to electron fluids with point group symmetries, and those with discrete translational symmetry. We start by extending the Kubo formalism for viscosity to systems with internal degrees of freedom and discrete translational symmetry, highlighting the importance of properly considering the role of internal angular momentum. We analyze the Hall components of the viscoelastic response tensor in systems with discrete point group symmetry, focusing on the hydrodynamic implications of the resulting forces. We show that though there are generally six Hall viscosities, there are only three independent contributions to the viscous force density in the bulk. To compute these coefficients, we develop a framework to consistently write down the long-wavelength stress tensor and viscosity for multi-component lattice systems. We apply our formalism to lattice and continuum models, including a lattice Chern insulator and anisotropic superfluid.

cond-mat.mes-hall