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Prathamesh Pradeep Khole

Publications and source records attributed to Prathamesh Pradeep Khole.

3 recordsLinked to original sources

You Cannot Recover What Was Never Measured: Quantifying the Information Ceiling of Ultra-Low-Field MRI Super-Resolution

Generative super-resolution models can turn portable 64 mT MRI into images that look like 3T scans, and the field evaluates them with PSNR, SSIM, and pixelwise uncertainty, most often on pairs built by synthetically degrading high-field images. Prior work acknowledges that these models hallucinate and that the problem is ill posed, but to our knowledge no study measures how much information about the individual subject the real low-field scan actually contains. We measure it. Using paired 64 mT and 3T scans of the same subjects from three public datasets, and a measurement protocol validated on tests whose correct answer is known in advance, we find that, judged over the whole brain, real 64 mT scans carry structure specific to the individual only down to approximately 3 to 4 mm half-pitch in plane, and coarser still through plane. Standard synthetic degradations preserve subject information roughly 1 mm beyond this ceiling, so models trained and benchmarked on synthetic pairs are evaluated on information that real scanners never record. We then test trained diffusion models and a publicly released external model on real paired acquisitions; 24 trained runs of five architectures (GAN, diffusion, and transformer families) give the coverage of the audit. On every subject where faithfulness can be measured, fine output detail is no more correlated with the subject's own 3T scan than with a stranger's, while sample-variance uncertainty does not distinguish fabricated structure from reconstruction difficulty. Because PSNR and SSIM score resemblance to a reference rather than whether detail belongs to the subject, a benchmark scored by them cannot tell recovery from fabrication. Code for the measurement protocol will be released so that recoverability claims can be tested for newer models.

cs.CV↗

Spinverse: Differentiable Physics for Permeability-Aware Microstructure Reconstruction from Diffusion MRI

Diffusion MRI (dMRI) is sensitive to microstructural barriers, yet most existing methods either assume impermeable boundaries or estimate voxel-level parameters without recovering explicit interfaces. We present Spinverse, a permeability-aware reconstruction method that inverts dMRI measurements through a fully differentiable Bloch-Torrey simulator. Spinverse represents tissue on a fixed tetrahedral grid and treats each interior face permeability as a learnable parameter; low-permeability faces act as diffusion barriers, so microstructural boundaries whose topology is not fixed a priori (up to the resolution of the ambient mesh) emerge without changing mesh connectivity or vertex positions. Given a target signal, we optimize face permeabilities by backpropagating a signal-matching loss through the PDE forward model, and recover an interface by thresholding the learned permeability field. To mitigate the ill-posedness of permeability inversion, we use mesh-based geometric priors; to avoid local minima, we use a staged multi-sequence optimization curriculum. Across a collection of synthetic voxel meshes, Spinverse reconstructs diverse geometries and demonstrates that sequence scheduling and regularization are critical to avoid outline-only solutions while improving both boundary accuracy and structural validity.

cs.CV↗

ReMiDi: Reconstruction of Microstructure Using a Differentiable Diffusion MRI Simulator

We propose ReMiDi, a novel method for inferring neuronal microstructure as arbitrary 3D meshes using a differentiable diffusion Magnetic Resonance Imaging (dMRI) simulator. We first implemented in PyTorch a differentiable dMRI simulator that simulates the forward diffusion process using a finite-element method on an input 3D microstructure mesh. To achieve significantly faster simulations, we solve the differential equation semi-analytically using a matrix formalism approach. Given a reference dMRI signal $S_{ref}$, we use the differentiable simulator to iteratively update the input mesh such that it matches $S_{ref}$ using gradient-based learning. Since directly optimizing the 3D coordinates of the vertices is challenging, particularly due to ill-posedness of the inverse problem, we instead optimize a lower-dimensional latent space representation of the mesh. The mesh is first encoded into spectral coefficients, which are further encoded into a latent $\textbf{z}$ using an auto-encoder, and are then decoded back into the true mesh. We present an end-to-end differentiable pipeline that simulates signals that can be tuned to match a reference signal by iteratively updating the latent representation $\textbf{z}$. We demonstrate the ability to reconstruct microstructures of arbitrary shapes represented by finite-element meshes, with a focus on axonal geometries found in the brain white matter, including bending, fanning and beading fibers. Our source code is available online.

eess.IV↗